Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Reverse (-)

6849665 .. 6854437

Gene Structure 4773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG085100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1614 bp

ATGGAAAAGCACAAGCATCAGAATCCATCGAAGTCAGTGAACGACGCAGTGTACAAGCTCCAGCTGGCACTCCTCGACGGCGTCAAAACCCTAGACCACCTCTACTTAGCCGGCTCCATAATCTCCCGCTCCGACTACAACGACGTCGTTACGGAGCGATCCATCGCCGACCTATGCGGCTACCCTCTCTGCTCCAATGGCCTACCTTCCGAAGCTTCCCGTTCCCGCAAGGGTCACTATCGCATTTCGCTCAAGGAGCACAAGGTGTACGATCTCCGAGAGACGAAGCTCTACTGCTCCTCCAAGTGCGTGATCGATAGCAAGGCGTTTTCTCAGAGCTTGAGCGAGGAGAGGTGTGATATCTTGGATTTCGGAAAGGTCGAGAGGGTTTTGGGGCAATTTGGGGAAAAAGATGAACAGGGGAAGAAGGAGATTGGGGATTTGGGGATTTCTAAGTTGAAGATTGAAGAAAAGAGTGAGACTTATAGTGGCAAATTGGAGGACTGGGTTGGTCCTTCCAATGCCATTGAAGGATATGTTCCCAAAAAAGATAGGGGTTCGAAAAAGAGCAAACAAGGGTCCAAAGGGAAAGATACGAAGCCGAGTGGTGGTGGGAAGCAATTAATTTTGAATGATATGGACTTCATGAGTACACTATTAGCTTGTGATGAATATAGTGTGTCCAAAATGCCACCAAGTGTAGCAGGGAATAGTGTTGACACTACGTTAAAGGAACCAAAAGGAAAAGTTGGCGGCAAAGATTCAGAGAGCGGATTTAGTGTGTTGGAAACCTCGGCTGCTCCTAATATGAGTGAAGTGGGTGTGATGGATGTTGGGGATTTAGGTATGTCTAGGTTGAAGATTGAAGAGAAAGAGGAATCCTTTGTTGGTAAGGCAGAGAAATCGAGTGAGGCTAGACTGAGGTCTTCTCTTAAACATTCAGGGACAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGACGAAAAGATTGATAGTACCGGGAGGAGAAATCTTTGTGAGGTGAGAGACATGGAAGATGGAATTGAAAATCCTGGTGCATTTGGAAGCTTGCACAAACCTTCTACATCAAATGAAGCTGGTTCCTCTTTTAATTGGGTTGATAAGACGATTGATAGTACTAAGAGTGAAAATATTTGTGAGGTTAGAGAAATGCAAGATGCAAAAGATGTTCCTGAGGTATTAGGCAGTTCAGTCCTGCAAGATAATGAATGGTTTGAGTCGGCAGAAGCCTGTGCATCAGCATTGAGTCAGGCAGCCAGCGTTGTTGCAACTGGAGAATCTGATACTAATGATGCTGTGTCAAAAGCCGGGATTATTATATTGCCACGTCCAGATGGTGTGGATGAAGAAGAGTCCATAGTGGATGATGTGTATGAAGAAGATTCCATAGAGGATAGTGCGGATGAAGAAGAGTCTACAGAGGATGTTGACATGCTTGAACCAGAACATGCTGTTTCAAAGTGGCCAAGAAAGCCCGAAAGTTCACAGTTTGATTTATTTAACCCTGAGGATTCTTGGTTTGATGCTCCACCAGATGGTTTCAATTTAACTGTAAGAGTTATTTTTGTTTTTGGGAGGCGCACGGGAGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

537

Amino Acids

58.85

Weight (kDa)

4.83

Isoelectric Point (pI)

50.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	40 - 115	1.2e-22	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB7I	CCANNNNNTGG	1 cut(s)	1556
AccBSI	CCGCTC	2 cut(s)	129, 771
AccI	GTMKAC	1 cut(s)	1436
AciI	CCGC	6 cut(s)	127, 177, 226, 753, 771, 1421
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	1 cut(s)	1484
AcyI	GRCGYC	2 cut(s)	81, 144
AdeI	CACNNNGTG	2 cut(s)	265, 698
AfaI	GTAC	5 cut(s)	53, 269, 652, 997, 1138
AfiI	CCNNNNNNNGG	2 cut(s)	608, 1556
AjiI	CACGTC	1 cut(s)	1349
AjnI	CCWGG	1 cut(s)	1051
AjuI	GAANNNNNNNTTGG	2 cut(s)	870, 902
AluBI	AGCT	8 cut(s)	58, 64, 215, 289, 339, 662, 1068, 1097
AluI	AGCT	8 cut(s)	58, 64, 215, 289, 339, 662, 1068, 1097
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	275, 473, 1020
AlwI	GGATC	1 cut(s)	153
AoxI	GGCC	2 cut(s)	199, 1484
ApeKI	GCWGC	2 cut(s)	797, 1274
AseI	ATTAAT	1 cut(s)	623
AspLEI	GCGC	1 cut(s)	1602
AspS9I	GGNCC	2 cut(s)	512, 579
AsuC2I	CCSGG	2 cut(s)	1000, 1330
AsuHPI	GGTGA	1 cut(s)	1033
AsuII	TTCGAA	1 cut(s)	560
AvaII	GGWCC	2 cut(s)	512, 579
AxyI	CCTNAGG	2 cut(s)	1194, 1527
BalI	TGGCCA	1 cut(s)	1486
BbsI	GAAGAC	1 cut(s)	918
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	2 cut(s)	784, 1286
BccI	CCATC	6 cut(s)	34, 170, 820, 1031, 1349, 1550
BceAI	ACGGC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	885, 919
BciT130I	CCWGG	1 cut(s)	1053
BcnI	CCSGG	2 cut(s)	1000, 1330
BcoDI	GTCTC	3 cut(s)	275, 473, 1020
BfaI	CTAG	3 cut(s)	92, 852, 915
BfmI	CTRYAG	1 cut(s)	1437
BisI	GCNGC	4 cut(s)	178, 754, 798, 1275
BlsI	GCNGC	4 cut(s)	179, 755, 799, 1276
BmcAI	AGTACT	1 cut(s)	1138
Bme1390I	CCNGG	3 cut(s)	1000, 1053, 1330
Bme18I	GGWCC	2 cut(s)	512, 579
BmgBI	CACGTC	1 cut(s)	1349
BmgT120I	GGNCC	2 cut(s)	512, 579
BmiI	GGNNCC	4 cut(s)	115, 580, 735, 1102
BmrFI	CCNGG	3 cut(s)	1000, 1053, 1330
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	5 cut(s)	25, 1168, 1265, 1303, 1534
BmuI	ACTGGG	1 cut(s)	514
BoxI	GACNNNNGTC	1 cut(s)	922
BpiI	GAAGAC	1 cut(s)	918
BplI	GAGNNNNNCTC	2 cut(s)	913, 945
BpmI	CTGGAG	2 cut(s)	44, 1314
Bpu14I	TTCGAA	1 cut(s)	560
BpuEI	CTTGAG	2 cut(s)	236, 361
BpuMI	CCSGG	2 cut(s)	1000, 1330
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	81, 144
BsaJI	CCNNGG	1 cut(s)	792
BsaXI	ACNNNNNCTCC	2 cut(s)	284, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	608, 1556
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	2 cut(s)	509, 1297
Bse21I	CCTNAGG	2 cut(s)	1194, 1527
BseBI	CCWGG	1 cut(s)	1053
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	792
BseGI	GGATG	5 cut(s)	835, 1369, 1390, 1429, 1450
BseLI	CCNNNNNNNGG	2 cut(s)	608, 1556
BseMII	CTCAG	4 cut(s)	347, 911, 1185, 1518
BseNI	ACTGG	2 cut(s)	509, 1297
BseRI	GAGGAG	4 cut(s)	62, 289, 362, 1018
BseXI	GCAGC	2 cut(s)	784, 1286
BshFI	GGCC	2 cut(s)	201, 1486
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	3 cut(s)	111, 999, 1329
BslFI	GGGAC	1 cut(s)	958
BslI	CCNNNNNNNGG	2 cut(s)	608, 1556
BsmAI	GTCTC	3 cut(s)	275, 473, 1020
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	958
BsnI	GGCC	2 cut(s)	201, 1486
Bsp119I	TTCGAA	1 cut(s)	560
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	3 cut(s)	158, 271, 312
BspACI	CCGC	6 cut(s)	127, 177, 226, 753, 771, 1421
BspANI	GGCC	2 cut(s)	201, 1486
BspCNI	CTCAG	4 cut(s)	346, 912, 1186, 1519
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	645
BspLI	GGNNCC	4 cut(s)	115, 580, 735, 1102
BspPI	GGATC	1 cut(s)	153
BspT104I	TTCGAA	1 cut(s)	560
BsrBI	CCGCTC	2 cut(s)	129, 771
BsrFI	RCCGGY	1 cut(s)	110
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	509, 1297
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	1 cut(s)	792
BssMI	GATC	3 cut(s)	158, 271, 312
BssNI	GRCGYC	2 cut(s)	81, 144
Bst2UI	CCWGG	1 cut(s)	1053
Bst4CI	ACNGT	2 cut(s)	1509, 1573
Bst6I	CTCTTC	3 cut(s)	861, 1365, 1425
BstACI	GRCGYC	2 cut(s)	81, 144
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	560
BstC8I	GCNNGC	4 cut(s)	66, 112, 1070, 1279
BstDEI	CTNAG	8 cut(s)	106, 333, 453, 920, 956, 1140, 1194, 1527
BstF5I	GGATG	5 cut(s)	835, 1369, 1390, 1429, 1450
BstHHI	GCGC	1 cut(s)	1602
BstKTI	GATC	3 cut(s)	161, 274, 315
BstMAI	GTCTC	3 cut(s)	275, 473, 1020
BstMBI	GATC	3 cut(s)	158, 271, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	198, 256, 1492
BstNI	CCWGG	1 cut(s)	1053
BstNSI	RCATGY	2 cut(s)	1456, 1472
BstPAI	GACNNNNGTC	1 cut(s)	922
BstSCI	CCNGG	3 cut(s)	998, 1051, 1328
BstSFI	CTRYAG	1 cut(s)	1437
BstV1I	GCAGC	2 cut(s)	784, 1286
BstV2I	GAAGAC	1 cut(s)	918
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	1194, 1527
BsuRI	GGCC	2 cut(s)	201, 1486
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	148
BtrI	CACGTC	1 cut(s)	1349
BtsCI	GGATG	5 cut(s)	835, 1369, 1390, 1429, 1450
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	2 cut(s)	42, 54
Cac8I	GCNNGC	4 cut(s)	66, 112, 1070, 1279
CciI	TCATGA	1 cut(s)	645
CfoI	GCGC	1 cut(s)	1602
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	512, 579
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	2 cut(s)	53, 70
Csp6I	GTAC	5 cut(s)	52, 268, 651, 996, 1137
CviAII	CATG	4 cut(s)	646, 1030, 1453, 1469
CviQI	GTAC	5 cut(s)	52, 268, 651, 996, 1137
DdeI	CTNAG	8 cut(s)	106, 333, 453, 920, 956, 1140, 1194, 1527
DpnI	GATC	3 cut(s)	160, 273, 314
DpnII	GATC	3 cut(s)	158, 271, 312
DraIII	CACNNNGTG	2 cut(s)	265, 698
EaeI	YGGCCR	1 cut(s)	1484
Eam1104I	CTCTTC	3 cut(s)	861, 1365, 1425
EarI	CTCTTC	3 cut(s)	861, 1365, 1425
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	2 cut(s)	512, 579
Eco81I	CCTNAGG	2 cut(s)	1194, 1527
EcoRII	CCWGG	1 cut(s)	1051
EcoRV	GATATC	1 cut(s)	361
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	4 cut(s)	649, 1033, 1456, 1472
FaqI	GGGAC	1 cut(s)	958
FatI	CATG	4 cut(s)	645, 1029, 1452, 1468
FauI	CCCGC	2 cut(s)	134, 233
FblI	GTMKAC	1 cut(s)	1436
Fnu4HI	GCNGC	4 cut(s)	178, 754, 798, 1275
FokI	GGATG	5 cut(s)	842, 1376, 1397, 1436, 1457
Fsp4HI	GCNGC	4 cut(s)	178, 754, 798, 1275
FspBI	CTAG	3 cut(s)	92, 852, 915
GlaI	GCGC	1 cut(s)	1601
GluI	GCNGC	4 cut(s)	178, 754, 798, 1275
GsuI	CTGGAG	2 cut(s)	44, 1314
HaeIII	GGCC	2 cut(s)	201, 1486
HapII	CCGG	3 cut(s)	111, 999, 1329
HgaI	GACGC	2 cut(s)	53, 70
HhaI	GCGC	1 cut(s)	1602
Hin1I	GRCGYC	2 cut(s)	81, 144
Hin1II	CATG	4 cut(s)	649, 1033, 1456, 1472
Hin6I	GCGC	1 cut(s)	1600
HinP1I	GCGC	1 cut(s)	1600
HincII	GTYRAC	2 cut(s)	718, 1450
HindII	GTYRAC	2 cut(s)	718, 1450
HindIII	AAGCTT	2 cut(s)	213, 1066
HpaII	CCGG	3 cut(s)	111, 999, 1329
HphI	GGTGA	1 cut(s)	1033
Hpy166II	GTNNAC	8 cut(s)	40, 52, 268, 653, 718, 1437, 1450, 1505
Hpy188I	TCNGA	8 cut(s)	21, 133, 211, 278, 336, 374, 766, 1303
Hpy188III	TCNNGA	4 cut(s)	382, 646, 1193, 1352
Hpy8I	GTNNAC	8 cut(s)	40, 52, 268, 653, 718, 1437, 1450, 1505
Hpy99I	CGWCG	4 cut(s)	47, 80, 146, 149
HpyAV	CCTTC	5 cut(s)	216, 421, 524, 525, 1089
HpyCH4III	ACNGT	2 cut(s)	1509, 1573
HpyCH4IV	ACGT	3 cut(s)	144, 725, 1348
HpyCH4V	TGCA	7 cut(s)	1058, 1072, 1174, 1181, 1219, 1256, 1289
HpyF10VI	GCNNNNNNNGC	3 cut(s)	198, 256, 1492
HpyF3I	CTNAG	8 cut(s)	106, 333, 453, 920, 956, 1140, 1194, 1527
HpySE526I	ACGT	3 cut(s)	144, 725, 1348
Hsp92I	GRCGYC	2 cut(s)	81, 144
Hsp92II	CATG	4 cut(s)	649, 1033, 1456, 1472
HspAI	GCGC	1 cut(s)	1600
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	158, 271, 312
LmnI	GCTCC	9 cut(s)	63, 119, 134, 154, 197, 256, 302, 805, 1552
Lsp1109I	GCAGC	2 cut(s)	784, 1286
LweI	GCATC	5 cut(s)	25, 1168, 1265, 1303, 1534
MaeI	CTAG	3 cut(s)	92, 852, 915
MaeII	ACGT	3 cut(s)	144, 725, 1348
MaeIII	GTNAC	3 cut(s)	148, 233, 967
MalI	GATC	3 cut(s)	160, 273, 314
MbiI	CCGCTC	2 cut(s)	129, 771
MboI	GATC	3 cut(s)	158, 271, 312
MhlI	GDGCHC	1 cut(s)	261
MlsI	TGGCCA	1 cut(s)	1486
MluCI	AATT	7 cut(s)	398, 494, 620, 624, 1041, 1111, 1564
MluNI	TGGCCA	1 cut(s)	1486
MlyI	GAGTC	4 cut(s)	1247, 1276, 1382, 1442
MmeI	TCCRAC	2 cut(s)	156, 765
Mox20I	TGGCCA	1 cut(s)	1486
MroNI	GCCGGC	1 cut(s)	110
MscI	TGGCCA	1 cut(s)	1486
MseI	TTAA	7 cut(s)	623, 728, 933, 1110, 1521, 1568, 1612
Msp20I	TGGCCA	1 cut(s)	1486
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	3 cut(s)	111, 999, 1329
MspR9I	CCNGG	3 cut(s)	1000, 1053, 1330
MvaI	CCWGG	1 cut(s)	1053
MwoI	GCNNNNNNNGC	3 cut(s)	198, 256, 1492
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	2 cut(s)	1000, 1330
NdeII	GATC	3 cut(s)	158, 271, 312
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	649, 1033, 1456, 1472
NlaIV	GGNNCC	4 cut(s)	115, 580, 735, 1102
NmeAIII	GCCGAG	2 cut(s)	627, 773
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	2 cut(s)	1456, 1472
NspV	TTCGAA	1 cut(s)	560
PagI	TCATGA	1 cut(s)	645
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PdiI	GCCGGC	1 cut(s)	112
PfeI	GAWTC	6 cut(s)	22, 761, 878, 1298, 1403, 1532
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	1556
PkrI	GCNGC	4 cut(s)	179, 755, 799, 1276
PleI	GAGTC	4 cut(s)	1246, 1275, 1381, 1441
PpsI	GAGTC	4 cut(s)	1246, 1275, 1381, 1441
PshAI	GACNNNNGTC	1 cut(s)	922
PshBI	ATTAAT	1 cut(s)	623
Psp6I	CCWGG	1 cut(s)	1051
PspGI	CCWGG	1 cut(s)	1051
PspN4I	GGNNCC	4 cut(s)	115, 580, 735, 1102
PspPI	GGNCC	2 cut(s)	512, 579
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	5 cut(s)	53, 269, 652, 997, 1138
RsaNI	GTAC	5 cut(s)	52, 268, 651, 996, 1137
SaqAI	TTAA	7 cut(s)	623, 728, 933, 1110, 1521, 1568, 1612
SatI	GCNGC	4 cut(s)	178, 754, 798, 1275
Sau3AI	GATC	3 cut(s)	158, 271, 312
Sau96I	GGNCC	2 cut(s)	512, 579
ScaI	AGTACT	1 cut(s)	1138
SchI	GAGTC	4 cut(s)	1247, 1276, 1382, 1442
ScrFI	CCNGG	3 cut(s)	1000, 1053, 1330
SduI	GDGCHC	1 cut(s)	261
SfaNI	GCATC	5 cut(s)	25, 1168, 1265, 1303, 1534
SfcI	CTRYAG	1 cut(s)	1437
SfuI	TTCGAA	1 cut(s)	560
SinI	GGWCC	2 cut(s)	512, 579
SmlI	CTYRAG	2 cut(s)	251, 340
SmoI	CTYRAG	2 cut(s)	251, 340
Sse9I	AATT	7 cut(s)	398, 494, 620, 624, 1041, 1111, 1564
SsiI	CCGC	6 cut(s)	127, 177, 226, 753, 771, 1421
SspI	AATATT	1 cut(s)	1153
SspMI	CTAG	3 cut(s)	92, 852, 915
StyD4I	CCNGG	3 cut(s)	998, 1051, 1328
TaaI	ACNGT	2 cut(s)	1509, 1573
TaiI	ACGT	3 cut(s)	147, 728, 1351
TaqI	TCGA	6 cut(s)	29, 75, 315, 381, 560, 905
TasI	AATT	7 cut(s)	398, 494, 620, 624, 1041, 1111, 1564
TatI	WGTACW	3 cut(s)	51, 650, 1136
TauI	GCSGC	2 cut(s)	180, 756
TfiI	GAWTC	6 cut(s)	22, 761, 878, 1298, 1403, 1532
Tru1I	TTAA	7 cut(s)	623, 728, 933, 1110, 1521, 1568, 1612
Tru9I	TTAA	7 cut(s)	623, 728, 933, 1110, 1521, 1568, 1612
TscAI	CASTG	2 cut(s)	42, 54
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	797, 1274
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	8 cut(s)	429, 634, 684, 1107, 1242, 1380, 1410, 1440
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	2 cut(s)	42, 54
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	1556
VpaK11BI	GGWCC	2 cut(s)	512, 579
VspI	ATTAAT	1 cut(s)	623
XceI	RCATGY	2 cut(s)	1456, 1472
XmiI	GTMKAC	1 cut(s)	1436
XspI	CTAG	3 cut(s)	92, 852, 915
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	1138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.