Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Reverse (-)

6681933 .. 6684706

Gene Structure 2774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G007250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTTGGGGATTTATGGTATGTCTAGGTTGAAGATTGAAGAGAAAGAGGAATCCTTTGTTGGTAAGGCAGAGAAATCGAGTGAGGCTAGACTGAGGTCTTCTCTCAAACATTCAGGGACAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGACGAAAAGATTGATAGTACCGGGAGGAGAAATCTTTGTGAGGTGAGAGACATGGAAGATGGAATTGAAAATCCTGGTGCATTTGGCAGCTTGCACAAACCTTCTACATCAAATGAAGCTGGTTCCTCTTTTAATTGGGTTGATAAGACGATTGATAGTACTAAGAGTGAAAATATTTGTGAGGTTAGAGAAATGCATGATGCAAAAGATGTTCCTGAGGTATTAGGCAGTTCAGTCCTGCAAGACAATGAATGGTTTGAGTCGGCAGAAGCCTGTGCATCAGCATTGAGTCAGGCAGCCAGCGCTGTTGCAACTGGAGAATCTGATACTAATGATGCTGTGTCAAAAGCCGGGATTATTATATTGCCACGTCCAGATGGTGTGGATGAAGAAGAGTCCATAGTGGATGATGGGTATGAAGAAGATTCTATAGAGGACAGTGTGGATGAAGAAGAGTCTACAGAGGATGTTGACATGCTTGAACCAGAACATGCTGTTTCAAAGTGGCCAAGAAAGCCCGAAAGTTCACAGTTTGATTTATTTAACCCTGAGGATTCTTGGTTTGATGCTCCACCAGATGGTTTCAATTTAACTTTATCTCCTTTTGCAACAATGTGGAATGCACTCTTTACATGGATAACATCATCTACATTGGCTTATATATATGGAAAAGATGACAGTTCCCATGAAGAGTTTCTCTATGTCAATGGGAGAAGTTATCCCCATAAGATTGTGTTGGCAGATGGTCGGTCTTCAGAAATCAAGTTAACTGTGGGTGAATCTCTCTCTCGGGCTCTACCAGAAGTTGTTGCTGAACTAGGGCTACCAGTATCCAGTTTAGAGAAAGGAATGGGCTTCATGTTGAATACAATGTCCTTTATTGAGGCGCTACCGGCATTCAGAATGAAACAGTGGCAAGTGATTGCTCTTCTTTTCATTGAGGGCCTCTCTGTTTGTAGGATCCCGGCACTTACTTCTCGCATGACAAATAGAAGGGTACTGATTCAGAAGGTGCTGGATGGTGCCCGTATAAGTGTAGAAGATTACGAGATTATGAAGGATTTCCTAATACCGCTTGGCCGAGCGCCTCAATTCTCATCCCAGAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

421

Amino Acids

46.57

Weight (kDa)

4.56

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1172
AccB7I	CCANNNNNTGG	1 cut(s)	728
AccI	GTMKAC	1 cut(s)	608
AciI	CCGC	1 cut(s)	1223
AclWI	GGATC	2 cut(s)	1105, 1118
AcoI	YGGCCR	2 cut(s)	656, 1228
AcuI	CTGAAG	1 cut(s)	888
AfaI	GTAC	3 cut(s)	169, 310, 1149
AfeI	AGCGCT	1 cut(s)	454
AfiI	CCNNNNNNNGG	1 cut(s)	728
AgsI	TTSAA	7 cut(s)	31, 38, 218, 632, 651, 736, 1015
AjiI	CACGTC	1 cut(s)	521
AjnI	CCWGG	1 cut(s)	223
AjuI	GAANNNNNNNTTGG	2 cut(s)	42, 74
AluBI	AGCT	2 cut(s)	240, 269
AluI	AGCT	2 cut(s)	240, 269
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	1105, 1118
Ama87I	CYCGRG	1 cut(s)	939
Aor51HI	AGCGCT	1 cut(s)	454
AoxI	GGCC	3 cut(s)	656, 1093, 1228
ApeKI	GCWGC	2 cut(s)	237, 446
Asp700I	GAANNNNTTC	2 cut(s)	843, 1211
AspLEI	GCGC	3 cut(s)	455, 1039, 1237
AspS9I	GGNCC	1 cut(s)	1093
AsuC2I	CCSGG	3 cut(s)	172, 502, 1115
AsuHPI	GGTGA	2 cut(s)	205, 938
AvaI	CYCGRG	1 cut(s)	939
AxyI	CCTNAGG	2 cut(s)	366, 699
BaeGI	GKGCMC	1 cut(s)	1177
BalI	TGGCCA	1 cut(s)	658
BamHI	GGATCC	1 cut(s)	1110
BanI	GGYRCC	1 cut(s)	1172
BanII	GRGCYC	1 cut(s)	946
BbsI	GAAGAC	2 cut(s)	90, 894
BbvI	GCAGC	2 cut(s)	249, 458
BccI	CCATC	6 cut(s)	203, 521, 554, 722, 887, 1163
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	225
BciVI	GTATCC	1 cut(s)	991
BcnI	CCSGG	3 cut(s)	172, 502, 1115
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	3 cut(s)	24, 87, 968
BfmI	CTRYAG	2 cut(s)	579, 609
BfoI	RGCGCY	3 cut(s)	456, 1040, 1238
BfuI	GTATCC	1 cut(s)	991
BisI	GCNGC	2 cut(s)	238, 447
BlsI	GCNGC	2 cut(s)	239, 448
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	4 cut(s)	172, 225, 502, 1115
BmeT110I	CYCGRG	1 cut(s)	939
BmgBI	CACGTC	1 cut(s)	521
BmgT120I	GGNCC	1 cut(s)	1093
BmiI	GGNNCC	3 cut(s)	274, 1112, 1174
BmrFI	CCNGG	4 cut(s)	172, 225, 502, 1115
BmsI	GCATC	4 cut(s)	340, 437, 475, 706
BoxI	GACNNNNGTC	1 cut(s)	94
BpiI	GAAGAC	2 cut(s)	90, 894
BplI	GAGNNNNNCTC	4 cut(s)	85, 117, 1082, 1114
BpmI	CTGGAG	1 cut(s)	486
BpuMI	CCSGG	3 cut(s)	172, 502, 1115
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	1 cut(s)	728
Bse118I	RCCGGY	1 cut(s)	1042
Bse1I	ACTGG	3 cut(s)	469, 977, 984
Bse21I	CCTNAGG	2 cut(s)	366, 699
BseBI	CCWGG	1 cut(s)	225
BseGI	GGATG	6 cut(s)	541, 562, 601, 622, 1174, 1247
BseLI	CCNNNNNNNGG	1 cut(s)	728
BseMII	CTCAG	3 cut(s)	83, 357, 690
BseNI	ACTGG	3 cut(s)	469, 977, 984
BseRI	GAGGAG	1 cut(s)	190
BseSI	GKGCMC	1 cut(s)	1177
BseXI	GCAGC	2 cut(s)	249, 458
BshFI	GGCC	3 cut(s)	658, 1095, 1230
BshNI	GGYRCC	1 cut(s)	1172
BsiHKCI	CYCGRG	1 cut(s)	939
BsiSI	CCGG	4 cut(s)	171, 501, 1043, 1115
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	1 cut(s)	728
BsmAI	GTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	2 cut(s)	775, 1046
BsnI	GGCC	3 cut(s)	658, 1095, 1230
BsoBI	CYCGRG	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	946, 1177
Bsp143I	GATC	1 cut(s)	1110
BspACI	CCGC	1 cut(s)	1223
BspANI	GGCC	3 cut(s)	658, 1095, 1230
BspCNI	CTCAG	3 cut(s)	84, 358, 691
BspLI	GGNNCC	3 cut(s)	274, 1112, 1174
BspPI	GGATC	2 cut(s)	1105, 1118
BspQI	GCTCTTC	1 cut(s)	1083
BspT107I	GGYRCC	1 cut(s)	1172
BsrFI	RCCGGY	1 cut(s)	1042
BsrI	ACTGG	3 cut(s)	469, 977, 984
BssAI	RCCGGY	1 cut(s)	1042
BssMI	GATC	1 cut(s)	1110
Bst2UI	CCWGG	1 cut(s)	225
Bst4CI	ACNGT	5 cut(s)	590, 681, 830, 922, 1062
Bst6I	CTCTTC	5 cut(s)	33, 537, 597, 834, 1083
BstC8I	GCNNGC	2 cut(s)	242, 451
BstDEI	CTNAG	5 cut(s)	92, 128, 312, 366, 699
BstF5I	GGATG	6 cut(s)	541, 562, 601, 622, 1174, 1247
BstH2I	RGCGCY	3 cut(s)	456, 1040, 1238
BstHHI	GCGC	3 cut(s)	455, 1039, 1237
BstKTI	GATC	1 cut(s)	1113
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	1110
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 664, 1043
BstNI	CCWGG	1 cut(s)	225
BstNSI	RCATGY	2 cut(s)	628, 644
BstPAI	GACNNNNGTC	1 cut(s)	94
BstSCI	CCNGG	4 cut(s)	170, 223, 500, 1113
BstSFI	CTRYAG	2 cut(s)	579, 609
BstSLI	GKGCMC	1 cut(s)	1177
BstV1I	GCAGC	2 cut(s)	249, 458
BstV2I	GAAGAC	2 cut(s)	90, 894
BstX2I	RGATCY	1 cut(s)	1110
BstYI	RGATCY	1 cut(s)	1110
Bsu36I	CCTNAGG	2 cut(s)	366, 699
BsuI	GTATCC	1 cut(s)	991
BsuRI	GGCC	3 cut(s)	658, 1095, 1230
BtrI	CACGTC	1 cut(s)	521
BtsCI	GGATG	6 cut(s)	541, 562, 601, 622, 1174, 1247
BtsIMutI	CAGTG	2 cut(s)	595, 1067
Cac8I	GCNNGC	2 cut(s)	242, 451
CfoI	GCGC	3 cut(s)	455, 1039, 1237
Cfr10I	RCCGGY	1 cut(s)	1042
Cfr13I	GGNCC	1 cut(s)	1093
Csp6I	GTAC	3 cut(s)	168, 309, 1148
CviAII	CATG	8 cut(s)	202, 347, 625, 641, 783, 836, 1009, 1132
CviQI	GTAC	3 cut(s)	168, 309, 1148
DdeI	CTNAG	5 cut(s)	92, 128, 312, 366, 699
DpnI	GATC	1 cut(s)	1112
DpnII	GATC	1 cut(s)	1110
EaeI	YGGCCR	2 cut(s)	656, 1228
Eam1104I	CTCTTC	5 cut(s)	33, 537, 597, 834, 1083
EarI	CTCTTC	5 cut(s)	33, 537, 597, 834, 1083
Eco24I	GRGCYC	1 cut(s)	946
Eco47III	AGCGCT	1 cut(s)	454
Eco57I	CTGAAG	1 cut(s)	888
Eco81I	CCTNAGG	2 cut(s)	366, 699
Eco88I	CYCGRG	1 cut(s)	939
EcoO109I	RGGNCCY	1 cut(s)	1093
EcoRII	CCWGG	1 cut(s)	223
EcoT22I	ATGCAT	1 cut(s)	348
EcoT38I	GRGCYC	1 cut(s)	946
FaeI	CATG	8 cut(s)	205, 350, 628, 644, 786, 839, 1012, 1135
FaqI	GGGAC	1 cut(s)	130
FatI	CATG	8 cut(s)	201, 346, 624, 640, 782, 835, 1008, 1131
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	2 cut(s)	238, 447
FokI	GGATG	6 cut(s)	548, 569, 608, 629, 1181, 1234
FriOI	GRGCYC	1 cut(s)	946
Fsp4HI	GCNGC	2 cut(s)	238, 447
FspBI	CTAG	3 cut(s)	24, 87, 968
GlaI	GCGC	3 cut(s)	454, 1038, 1236
GluI	GCNGC	2 cut(s)	238, 447
GsuI	CTGGAG	1 cut(s)	486
HaeII	RGCGCY	3 cut(s)	456, 1040, 1238
HaeIII	GGCC	3 cut(s)	658, 1095, 1230
HapII	CCGG	4 cut(s)	171, 501, 1043, 1115
HhaI	GCGC	3 cut(s)	455, 1039, 1237
Hin1II	CATG	8 cut(s)	205, 350, 628, 644, 786, 839, 1012, 1135
Hin6I	GCGC	3 cut(s)	453, 1037, 1235
HinP1I	GCGC	3 cut(s)	453, 1037, 1235
HincII	GTYRAC	2 cut(s)	622, 918
HindII	GTYRAC	2 cut(s)	622, 918
HpaI	GTTAAC	1 cut(s)	918
HpaII	CCGG	4 cut(s)	171, 501, 1043, 1115
HphI	GGTGA	2 cut(s)	205, 938
Hpy166II	GTNNAC	4 cut(s)	609, 622, 677, 918
Hpy188I	TCNGA	4 cut(s)	475, 907, 1052, 1158
Hpy188III	TCNNGA	2 cut(s)	365, 524
Hpy8I	GTNNAC	4 cut(s)	609, 622, 677, 918
HpyAV	CCTTC	4 cut(s)	261, 1137, 1153, 1201
HpyCH4III	ACNGT	5 cut(s)	590, 681, 830, 922, 1062
HpyCH4IV	ACGT	1 cut(s)	520
HpyCH4V	TGCA	9 cut(s)	230, 244, 346, 353, 391, 428, 461, 758, 773
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 664, 1043
HpyF3I	CTNAG	5 cut(s)	92, 128, 312, 366, 699
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	8 cut(s)	205, 350, 628, 644, 786, 839, 1012, 1135
HspAI	GCGC	3 cut(s)	453, 1037, 1235
KspAI	GTTAAC	1 cut(s)	918
Kzo9I	GATC	1 cut(s)	1110
LguI	GCTCTTC	1 cut(s)	1083
LmnI	GCTCC	1 cut(s)	724
Lsp1109I	GCAGC	2 cut(s)	249, 458
LweI	GCATC	4 cut(s)	340, 437, 475, 706
MaeI	CTAG	3 cut(s)	24, 87, 968
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	1112
MboI	GATC	1 cut(s)	1110
MflI	RGATCY	1 cut(s)	1110
MhlI	GDGCHC	2 cut(s)	946, 1177
MlsI	TGGCCA	1 cut(s)	658
MluCI	AATT	4 cut(s)	213, 283, 736, 1241
MluNI	TGGCCA	1 cut(s)	658
MlyI	GAGTC	4 cut(s)	419, 448, 554, 614
Mox20I	TGGCCA	1 cut(s)	658
Mph1103I	ATGCAT	1 cut(s)	348
MroXI	GAANNNNTTC	2 cut(s)	843, 1211
MscI	TGGCCA	1 cut(s)	658
MseI	TTAA	5 cut(s)	282, 693, 740, 917, 1264
Msp20I	TGGCCA	1 cut(s)	658
MspI	CCGG	4 cut(s)	171, 501, 1043, 1115
MspR9I	CCNGG	4 cut(s)	172, 225, 502, 1115
Mva1269I	GAATGC	2 cut(s)	775, 1046
MvaI	CCWGG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	452, 664, 1043
NciI	CCSGG	3 cut(s)	172, 502, 1115
NdeII	GATC	1 cut(s)	1110
NlaIII	CATG	8 cut(s)	205, 350, 628, 644, 786, 839, 1012, 1135
NlaIV	GGNNCC	3 cut(s)	274, 1112, 1174
NmeAIII	GCCGAG	1 cut(s)	1256
NsiI	ATGCAT	1 cut(s)	348
NspI	RCATGY	2 cut(s)	628, 644
PciSI	GCTCTTC	1 cut(s)	1083
PctI	GAATGC	2 cut(s)	775, 1046
PdmI	GAANNNNTTC	2 cut(s)	843, 1211
PfeI	GAWTC	6 cut(s)	50, 470, 575, 704, 929, 1153
PflMI	CCANNNNNTGG	1 cut(s)	728
PkrI	GCNGC	2 cut(s)	239, 448
PleI	GAGTC	4 cut(s)	418, 447, 553, 613
PpsI	GAGTC	4 cut(s)	418, 447, 553, 613
PshAI	GACNNNNGTC	1 cut(s)	94
Psp6I	CCWGG	1 cut(s)	223
PspGI	CCWGG	1 cut(s)	223
PspN4I	GGNNCC	3 cut(s)	274, 1112, 1174
PspPI	GGNCC	1 cut(s)	1093
PsrI	GAACNNNNNNTAC	2 cut(s)	957, 989
PsuI	RGATCY	1 cut(s)	1110
RsaI	GTAC	3 cut(s)	169, 310, 1149
RsaNI	GTAC	3 cut(s)	168, 309, 1148
SapI	GCTCTTC	1 cut(s)	1083
SaqAI	TTAA	5 cut(s)	282, 693, 740, 917, 1264
SatI	GCNGC	2 cut(s)	238, 447
Sau3AI	GATC	1 cut(s)	1110
Sau96I	GGNCC	1 cut(s)	1093
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	4 cut(s)	419, 448, 554, 614
ScrFI	CCNGG	4 cut(s)	172, 225, 502, 1115
SduI	GDGCHC	2 cut(s)	946, 1177
SfaNI	GCATC	4 cut(s)	340, 437, 475, 706
SfcI	CTRYAG	2 cut(s)	579, 609
Sse9I	AATT	4 cut(s)	213, 283, 736, 1241
SsiI	CCGC	1 cut(s)	1223
SspI	AATATT	1 cut(s)	325
SspMI	CTAG	3 cut(s)	24, 87, 968
StyD4I	CCNGG	4 cut(s)	170, 223, 500, 1113
TaaI	ACNGT	5 cut(s)	590, 681, 830, 922, 1062
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	1 cut(s)	77
TaqII	GACCGA	1 cut(s)	888
TasI	AATT	4 cut(s)	213, 283, 736, 1241
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	6 cut(s)	50, 470, 575, 704, 929, 1153
Tru1I	TTAA	5 cut(s)	282, 693, 740, 917, 1264
Tru9I	TTAA	5 cut(s)	282, 693, 740, 917, 1264
TscAI	CASTG	2 cut(s)	595, 1067
TseI	GCWGC	2 cut(s)	237, 446
TspRI	CASTG	2 cut(s)	595, 1067
Van91I	CCANNNNNTGG	1 cut(s)	728
XceI	RCATGY	2 cut(s)	628, 644
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	2 cut(s)	843, 1211
XspI	CTAG	3 cut(s)	24, 87, 968
ZrmI	AGTACT	1 cut(s)	310
Zsp2I	ATGCAT	1 cut(s)	348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.