Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Forward (+)

27970647 .. 27975309

Gene Structure 4663 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1189300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2115 bp

ATGGGGAAGAGCCAACCGCCGCCGCAGCAGCAGCCACCGGCTTCAGTGAAAGACACAGTTTACAAGCTCCAACTCGCTCTCCTCGACGGCGTCAAAACCCTAGACCACCTATACTTAGCCGGCTCAATCATCTCCCGCTCCGACTACAACGACGTTGTCACGGAGCGCACCATAGCCGACCACTGCGGCTACCCTCTCTGTCCCAATGCCTTGCCTCCGGAATCCTCCCGCCCCCGCAAGGGCCACTATCGTATTTCGCTCAAGGAGCACAAGGTCTACGACCTCCATGAGACCTACATGTACTGCTCTTCGAGCTGTCTTATCGAAAGCAAGGCTTTTGCTCAGAGTTTGAGCGAGGAGAGGTGCGATGTCTTGGATTACGGCAAGGTTGAGAGGGTCTTGAGGGCTTTTGGGGATGCGGATTTTGACAAAAGGGAAGTGGGGTTGGGGGACATTGGGGATTTGGGAATTTCGAAGTTGAAGATCGAAGAAAAGAGCGAAGCGGACAGTGGGGATTTGGGGATTTCTAAGTTGAAGATTGAAGAAAAGAGTGAAGTGCAGTTAGGGGATGTCGGCGTGGTTGGTCCCTCTAATGCTATTGAGGGTTATGTTCCACACAATCAGCGAATATCCAACCCATTGGGTTCGAAAAAGAACAAAAAAGGGTCCAAAGGTAAAGAAGCGAAAATGAGTGGCGGGAAAGATATGATCTTTAATGAGATGGATTTCATGAGTTGTATAATCGCTAGTGATGAATACAGTGTGTCCAAAATCCCACCAAGTTCTGGGGAGAATGGTTGTGAAACTAAGGTTAAAGAACCAGAAGGAAAAGTTTCTCATATTAAGAATGATTATGAAAGGAAATCCAGAAAATCAAGAGGGGAAAAAAGTACGATTTCCAAGGAAGATGATGTTGGTGTTCAAGAGGCGCCTTCAACATCAGAGACTTCTCAAACTGTTTTGAATAGAATTATTAAAGAAGCAAGAGAGGAATTCCATGGTGATAAAGCTGAGAAATCAAATGAGCGAATGTTGAGATCCTCTCTTAAACCTTCAGGGGCAAAAAAACTTAATCGCTCTGTTACTTGGGCTGACGAGAAGGTGGAACATAGAATGAATGGTTATGATGCATTTGGCAGTATCCACAAACCTTTGTTTAAACCTTCAGCAGAAAATGGAGTCGGTTGCTCTGTTACCTGGTCTGATGAGAAGATTGATAGCACTAAGAGTAAAAATGTTTCTGAGGTTAGAGAAGTGCAAGGTGCAAAAGAGGGTTCTGGTGTATTAGGGAATTTGGAATTGCAAGATAATGAACGTTTGGAATCCGCAGAATTCTGTGCCATGGCATTGAGGCAGGCAGCAGAAGCTGTTGCATCTGGAGAATCTGATGTCAATGGTGCTGTTTCAAGTGCTGGAATTATTTTATTGCCACGTCCAGATGGTGTGGATGAAGAAGAGCCTAATGAGGATGTTGACATGCTTGAACCAGAACAAGCTCCTCTGCAACCAAGAAATCTTGGAAATTTTGATTTGTTTGACTCTGAGAATACTTGGTTTGATGATCCGCCAGAGGGTTTCAGCTTAACTTTATCACCATTTTTAACAATGTGGAACTCACTCTTTACATGGATAACATCATCTACGCTAGCATATATATATGGGAGGGATGAAAGATTTCATGAAGAATTTCTCTCTATTAATGGGAAAGAGTATCCCCGTAAGATTGTCTTGGCTGGTGGTCACTCTTCTGAAATCAAGAAAACCCTAGCTGAATCTCTTGCTCGAACTCTACCAGGAGTTGTTTCCCAACTCAGGCTTCCAACACCAGTATCTAGTTTGGAGCAAGAAATGAGCCGCATGTTGGAGACGATGACTTTTGTTGATGCACTACCAGCATTCAGAATGAAACAATGGAAAGTGGTTGTTCTTCTTTTCCTTGAGGGACTCTCTGTTTACAGGATCCCTGCACTCGGTCCTTGCATGCCGGACAGAAGGATGCTGTTTCACAAGGTGCTGGATGGTTCGGAGATAACTGCAGAACACTACGAGCTTATGAAGGATCATATAATACCCCTAGGCCGAGCACCCGAATTCTCAGCTCAGAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

705

Amino Acids

77.93

Weight (kDa)

5.34

Isoelectric Point (pI)

45.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	43 - 118	2.6e-22	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	928
AccB7I	CCANNNNNTGG	1 cut(s)	785
AccBSI	CCGCTC	1 cut(s)	138
AccI	GTMKAC	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	217
AclI	AACGTT	1 cut(s)	1315
AclWI	GGATC	5 cut(s)	1032, 1556, 1954, 1967, 2067
AcsI	RAATTY	7 cut(s)	468, 992, 1291, 1331, 1522, 1685, 2090
AcuI	CTGAAG	3 cut(s)	27, 1038, 1149
AcyI	GRCGYC	2 cut(s)	90, 929
AdeI	CACNNNGTG	1 cut(s)	2011
AfaI	GTAC	2 cut(s)	302, 892
AfiI	CCNNNNNNNGG	7 cut(s)	238, 239, 785, 1571, 1812, 1861, 1970
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	8 cut(s)	481, 535, 542, 923, 936, 964, 1407, 1484
AjiI	CACGTC	1 cut(s)	1433
AjnI	CCWGG	2 cut(s)	1196, 1792
AjuI	GAANNNNNNNTTGG	4 cut(s)	897, 929, 1800, 1832
AluBI	AGCT	9 cut(s)	67, 315, 1010, 1367, 1496, 1581, 1769, 2050, 2099
AluI	AGCT	9 cut(s)	67, 315, 1010, 1367, 1496, 1581, 1769, 2050, 2099
Alw21I	GWGCWC	2 cut(s)	270, 2086
Alw26I	GTCTC	3 cut(s)	284, 938, 1859
AlwI	GGATC	5 cut(s)	1032, 1556, 1954, 1967, 2067
AlwNI	CAGNNNCTG	1 cut(s)	1367
Aor13HI	TCCGGA	1 cut(s)	217
AoxI	GGCC	2 cut(s)	241, 2077
ApeKI	GCWGC	4 cut(s)	25, 28, 31, 1358
ApoI	RAATTY	7 cut(s)	468, 992, 1291, 1331, 1522, 1685, 2090
AseI	ATTAAT	1 cut(s)	1698
Asp700I	GAANNNNTTC	3 cut(s)	832, 1674, 1686
AspA2I	CCTAGG	1 cut(s)	2074
AspLEI	GCGC	2 cut(s)	168, 931
AspS9I	GGNCC	4 cut(s)	241, 584, 666, 1973
AsuHPI	GGTGA	2 cut(s)	1013, 1584
AsuII	TTCGAA	2 cut(s)	473, 647
AsuNHI	GCTAGC	1 cut(s)	1645
AvaII	GGWCC	3 cut(s)	584, 666, 1973
AvrII	CCTAGG	1 cut(s)	2074
BaeI	ACNNNNGTAYC	2 cut(s)	1812, 1845
BamHI	GGATCC	1 cut(s)	1959
BanI	GGYRCC	1 cut(s)	928
Bbv12I	GWGCWC	2 cut(s)	270, 2086
BbvI	GCAGC	4 cut(s)	37, 40, 43, 1370
BccI	CCATC	3 cut(s)	715, 1433, 2012
BceAI	ACGGC	2 cut(s)	103, 397
BciT130I	CCWGG	2 cut(s)	1198, 1794
BciVI	GTATCC	2 cut(s)	1151, 1722
BcoDI	GTCTC	3 cut(s)	284, 938, 1859
BfaI	CTAG	6 cut(s)	101, 747, 1646, 1766, 1833, 2075
BfmI	CTRYAG	1 cut(s)	2034
BfoI	RGCGCY	1 cut(s)	932
BfuI	GTATCC	2 cut(s)	1151, 1722
BisI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 187, 1359, 1855
BlnI	CCTAGG	1 cut(s)	2074
BlsI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 188, 1360, 1856
Bme1390I	CCNGG	2 cut(s)	1198, 1794
Bme18I	GGWCC	3 cut(s)	584, 666, 1973
BmgBI	CACGTC	1 cut(s)	1433
BmgT120I	GGNCC	4 cut(s)	241, 584, 666, 1973
BmiI	GGNNCC	4 cut(s)	586, 667, 930, 1961
BmrFI	CCNGG	2 cut(s)	1198, 1794
BmsI	GCATC	5 cut(s)	406, 1117, 1382, 1873, 1986
BmtI	GCTAGC	1 cut(s)	1649
BplI	GAGNNNNNCTC	4 cut(s)	1027, 1059, 1931, 1963
BpmI	CTGGAG	1 cut(s)	1398
Bpu14I	TTCGAA	2 cut(s)	473, 647
BpuEI	CTTGAG	3 cut(s)	245, 421, 1958
BsaHI	GRCGYC	2 cut(s)	90, 929
BsaI	GGTCTC	1 cut(s)	284
BsaJI	CCNNGG	4 cut(s)	900, 997, 1341, 2074
BsaWI	WCCGGW	1 cut(s)	217
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	7 cut(s)	238, 239, 785, 1571, 1812, 1861, 1970
Bse118I	RCCGGY	2 cut(s)	37, 119
Bse1I	ACTGG	1 cut(s)	1826
BseAI	TCCGGA	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	1198, 1794
BseDI	CCNNGG	4 cut(s)	900, 997, 1341, 2074
BseGI	GGATG	7 cut(s)	421, 574, 1453, 1474, 1672, 2001, 2023
BseLI	CCNNNNNNNGG	7 cut(s)	238, 239, 785, 1571, 1812, 1861, 1970
BseMII	CTCAG	7 cut(s)	356, 1002, 1233, 1533, 1825, 2109, 2114
BseNI	ACTGG	1 cut(s)	1826
BseRI	GAGGAG	3 cut(s)	71, 371, 1488
BseXI	GCAGC	4 cut(s)	37, 40, 43, 1370
BsgI	GTGCAG	2 cut(s)	578, 1950
BshFI	GGCC	2 cut(s)	243, 2079
BshNI	GGYRCC	1 cut(s)	928
BsiHKAI	GWGCWC	2 cut(s)	270, 2086
BsiSI	CCGG	4 cut(s)	38, 120, 218, 1985
BslFI	GGGAC	4 cut(s)	186, 464, 570, 1956
BslI	CCNNNNNNNGG	7 cut(s)	238, 239, 785, 1571, 1812, 1861, 1970
BsmAI	GTCTC	3 cut(s)	284, 938, 1859
BsmBI	CGTCTC	1 cut(s)	1859
BsmFI	GGGAC	4 cut(s)	186, 464, 570, 1956
BsmI	GAATGC	1 cut(s)	1895
BsnI	GGCC	2 cut(s)	243, 2079
Bso31I	GGTCTC	1 cut(s)	284
Bsp119I	TTCGAA	2 cut(s)	473, 647
Bsp1286I	GDGCHC	2 cut(s)	270, 2086
Bsp13I	TCCGGA	1 cut(s)	217
Bsp143I	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
Bsp19I	CCATGG	2 cut(s)	997, 1341
BspANI	GGCC	2 cut(s)	243, 2079
BspCNI	CTCAG	7 cut(s)	355, 1003, 1234, 1534, 1824, 2108, 2113
BspEI	TCCGGA	1 cut(s)	217
BspHI	TCATGA	2 cut(s)	729, 1678
BspLI	GGNNCC	4 cut(s)	586, 667, 930, 1961
BspMAI	CTGCAG	1 cut(s)	2038
BspOI	GCTAGC	1 cut(s)	1649
BspPI	GGATC	5 cut(s)	1032, 1556, 1954, 1967, 2067
BspQI	GCTCTTC	3 cut(s)	2, 313, 1449
BspT104I	TTCGAA	2 cut(s)	473, 647
BspT107I	GGYRCC	1 cut(s)	928
BspTNI	GGTCTC	1 cut(s)	284
BsrBI	CCGCTC	1 cut(s)	138
BsrFI	RCCGGY	2 cut(s)	37, 119
BsrI	ACTGG	1 cut(s)	1826
BssAI	RCCGGY	2 cut(s)	37, 119
BssECI	CCNNGG	4 cut(s)	900, 997, 1341, 2074
BssMI	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
BssNI	GRCGYC	2 cut(s)	90, 929
BssT1I	CCWWGG	4 cut(s)	900, 997, 1341, 2074
Bst2UI	CCWGG	2 cut(s)	1198, 1794
Bst4CI	ACNGT	4 cut(s)	58, 509, 761, 958
Bst6I	CTCTTC	4 cut(s)	2, 313, 1449, 1750
BstACI	GRCGYC	2 cut(s)	90, 929
BstBI	TTCGAA	2 cut(s)	473, 647
BstC8I	GCNNGC	4 cut(s)	121, 1356, 1647, 1982
BstDSI	CCRYGG	2 cut(s)	997, 1341
BstF5I	GGATG	7 cut(s)	421, 574, 1453, 1474, 1672, 2001, 2023
BstH2I	RGCGCY	1 cut(s)	932
BstHHI	GCGC	2 cut(s)	168, 931
BstKTI	GATC	6 cut(s)	486, 711, 1040, 1564, 1962, 2062
BstMAI	GTCTC	3 cut(s)	284, 938, 1859
BstMBI	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
BstMWI	GCNNNNNNNGC	7 cut(s)	25, 28, 31, 265, 312, 1364, 1892
BstNI	CCWGG	2 cut(s)	1198, 1794
BstNSI	RCATGY	4 cut(s)	301, 1480, 1861, 1984
BstSCI	CCNGG	2 cut(s)	1196, 1792
BstSFI	CTRYAG	1 cut(s)	2034
BstV1I	GCAGC	4 cut(s)	37, 40, 43, 1370
BstX2I	RGATCY	2 cut(s)	1037, 1959
BstXI	CCANNNNNNTGG	1 cut(s)	640
BstYI	RGATCY	2 cut(s)	1037, 1959
BsuI	GTATCC	2 cut(s)	1151, 1722
BsuRI	GGCC	2 cut(s)	243, 2079
BtgI	CCRYGG	2 cut(s)	997, 1341
BtgZI	GCGATG	1 cut(s)	381
BtrI	CACGTC	1 cut(s)	1433
BtsCI	GGATG	7 cut(s)	421, 574, 1453, 1474, 1672, 2001, 2023
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	4 cut(s)	51, 181, 514, 766
Cac8I	GCNNGC	4 cut(s)	121, 1356, 1647, 1982
CaiI	CAGNNNCTG	1 cut(s)	1367
CciI	TCATGA	2 cut(s)	729, 1678
CfoI	GCGC	2 cut(s)	168, 931
Cfr10I	RCCGGY	2 cut(s)	37, 119
Cfr13I	GGNCC	4 cut(s)	241, 584, 666, 1973
CseI	GACGC	1 cut(s)	79
CsiI	ACCWGGT	1 cut(s)	1196
Csp6I	GTAC	2 cut(s)	301, 891
CviQI	GTAC	2 cut(s)	301, 891
DinI	GGCGCC	1 cut(s)	930
DpnI	GATC	6 cut(s)	485, 710, 1039, 1563, 1961, 2061
DpnII	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
DraI	TTTAAA	1 cut(s)	1159
DraIII	CACNNNGTG	1 cut(s)	2011
Eam1104I	CTCTTC	4 cut(s)	2, 313, 1449, 1750
EarI	CTCTTC	4 cut(s)	2, 313, 1449, 1750
EciI	GGCGGA	1 cut(s)	1554
Eco130I	CCWWGG	4 cut(s)	900, 997, 1341, 2074
Eco31I	GGTCTC	1 cut(s)	284
Eco47I	GGWCC	3 cut(s)	584, 666, 1973
Eco57I	CTGAAG	3 cut(s)	27, 1038, 1149
EcoRI	GAATTC	3 cut(s)	992, 1331, 2090
EcoRII	CCWGG	2 cut(s)	1196, 1792
EcoT14I	CCWWGG	4 cut(s)	900, 997, 1341, 2074
EcoT22I	ATGCAT	1 cut(s)	1132
EgeI	GGCGCC	1 cut(s)	930
EheI	GGCGCC	1 cut(s)	930
ErhI	CCWWGG	4 cut(s)	900, 997, 1341, 2074
Esp3I	CGTCTC	1 cut(s)	1859
FalI	AAGNNNNNCTT	4 cut(s)	319, 351, 1712, 1744
FaqI	GGGAC	4 cut(s)	186, 464, 570, 1956
FauI	CCCGC	4 cut(s)	143, 236, 242, 689
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 187, 1359, 1855
FokI	GGATG	7 cut(s)	428, 581, 1460, 1481, 1679, 2008, 2030
Fsp4HI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 187, 1359, 1855
FspBI	CTAG	6 cut(s)	101, 747, 1646, 1766, 1833, 2075
GlaI	GCGC	2 cut(s)	167, 930
GluI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 187, 1359, 1855
GsuI	CTGGAG	1 cut(s)	1398
HaeII	RGCGCY	1 cut(s)	932
HaeIII	GGCC	2 cut(s)	243, 2079
HapII	CCGG	4 cut(s)	38, 120, 218, 1985
HgaI	GACGC	1 cut(s)	79
HhaI	GCGC	2 cut(s)	168, 931
Hin1I	GRCGYC	2 cut(s)	90, 929
Hin6I	GCGC	2 cut(s)	166, 929
HinP1I	GCGC	2 cut(s)	166, 929
HincII	GTYRAC	1 cut(s)	1474
HindII	GTYRAC	1 cut(s)	1474
HinfI	GANTC	7 cut(s)	221, 1179, 1322, 1382, 1538, 1772, 1944
HpaII	CCGG	4 cut(s)	38, 120, 218, 1985
HphI	GGTGA	2 cut(s)	1013, 1584
Hpy166II	GTNNAC	4 cut(s)	61, 277, 1474, 1954
Hpy8I	GTNNAC	4 cut(s)	61, 277, 1474, 1954
Hpy99I	CGWCG	2 cut(s)	89, 155
HpyAV	CCTTC	7 cut(s)	818, 942, 1062, 1093, 1173, 1986, 2050
HpyCH4III	ACNGT	4 cut(s)	58, 509, 761, 958
HpyCH4IV	ACGT	3 cut(s)	153, 1315, 1432
HpyF10VI	GCNNNNNNNGC	7 cut(s)	25, 28, 31, 265, 312, 1364, 1892
HpySE526I	ACGT	3 cut(s)	153, 1315, 1432
Hsp92I	GRCGYC	2 cut(s)	90, 929
HspAI	GCGC	2 cut(s)	166, 929
KasI	GGCGCC	1 cut(s)	928
Kpn2I	TCCGGA	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	119
KroNI	GCCGGC	1 cut(s)	121
Kzo9I	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
LguI	GCTCTTC	3 cut(s)	2, 313, 1449
LmnI	GCTCC	6 cut(s)	72, 143, 163, 265, 1501, 1840
Lsp1109I	GCAGC	4 cut(s)	37, 40, 43, 1370
LweI	GCATC	5 cut(s)	406, 1117, 1382, 1873, 1986
MabI	ACCWGGT	1 cut(s)	1196
MaeI	CTAG	6 cut(s)	101, 747, 1646, 1766, 1833, 2075
MaeII	ACGT	3 cut(s)	153, 1315, 1432
MaeIII	GTNAC	4 cut(s)	157, 1081, 1192, 1739
MalI	GATC	6 cut(s)	485, 710, 1039, 1563, 1961, 2061
MbiI	CCGCTC	1 cut(s)	138
MboI	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
MflI	RGATCY	2 cut(s)	1037, 1959
MhlI	GDGCHC	2 cut(s)	270, 2086
Mly113I	GGCGCC	1 cut(s)	929
MlyI	GAGTC	3 cut(s)	1188, 1532, 1938
MmeI	TCCRAC	5 cut(s)	94, 165, 657, 1842, 1844
Mph1103I	ATGCAT	1 cut(s)	1132
MroI	TCCGGA	1 cut(s)	217
MroNI	GCCGGC	1 cut(s)	119
MroXI	GAANNNNTTC	3 cut(s)	832, 1674, 1686
MspI	CCGG	4 cut(s)	38, 120, 218, 1985
MspR9I	CCNGG	2 cut(s)	1198, 1794
MssI	GTTTAAAC	1 cut(s)	1159
Mva1269I	GAATGC	1 cut(s)	1895
MvaI	CCWGG	2 cut(s)	1198, 1794
MwoI	GCNNNNNNNGC	7 cut(s)	25, 28, 31, 265, 312, 1364, 1892
NaeI	GCCGGC	1 cut(s)	121
NarI	GGCGCC	1 cut(s)	929
NcoI	CCATGG	2 cut(s)	997, 1341
NdeII	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
NgoMIV	GCCGGC	1 cut(s)	119
NheI	GCTAGC	1 cut(s)	1645
NlaIV	GGNNCC	4 cut(s)	586, 667, 930, 1961
NmeAIII	GCCGAG	1 cut(s)	2105
NmuCI	GTSAC	2 cut(s)	157, 1739
NsiI	ATGCAT	1 cut(s)	1132
NspI	RCATGY	4 cut(s)	301, 1480, 1861, 1984
NspV	TTCGAA	2 cut(s)	473, 647
PaeI	GCATGC	1 cut(s)	1984
PagI	TCATGA	2 cut(s)	729, 1678
PciI	ACATGT	1 cut(s)	297
PciSI	GCTCTTC	3 cut(s)	2, 313, 1449
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PctI	GAATGC	1 cut(s)	1895
PdiI	GCCGGC	1 cut(s)	121
PdmI	GAANNNNTTC	3 cut(s)	832, 1674, 1686
PfeI	GAWTC	4 cut(s)	221, 1322, 1382, 1772
PflFI	GACNNNGTC	2 cut(s)	89, 155
PflMI	CCANNNNNTGG	1 cut(s)	785
PkrI	GCNGC	8 cut(s)	21, 24, 27, 30, 33, 188, 1360, 1856
PleI	GAGTC	3 cut(s)	1187, 1532, 1938
PluTI	GGCGCC	1 cut(s)	932
PmeI	GTTTAAAC	1 cut(s)	1159
PpsI	GAGTC	3 cut(s)	1187, 1532, 1938
PscI	ACATGT	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	1698
Psp1406I	AACGTT	1 cut(s)	1315
Psp6I	CCWGG	2 cut(s)	1196, 1792
PspGI	CCWGG	2 cut(s)	1196, 1792
PspN4I	GGNNCC	4 cut(s)	586, 667, 930, 1961
PspPI	GGNCC	4 cut(s)	241, 584, 666, 1973
PstI	CTGCAG	1 cut(s)	2038
PstNI	CAGNNNCTG	1 cut(s)	1367
PsuI	RGATCY	2 cut(s)	1037, 1959
PsyI	GACNNNGTC	2 cut(s)	89, 155
RsaI	GTAC	2 cut(s)	302, 892
RsaNI	GTAC	2 cut(s)	301, 891
SapI	GCTCTTC	3 cut(s)	2, 313, 1449
SatI	GCNGC	8 cut(s)	20, 23, 26, 29, 32, 187, 1359, 1855
Sau3AI	GATC	6 cut(s)	483, 708, 1037, 1561, 1959, 2059
Sau96I	GGNCC	4 cut(s)	241, 584, 666, 1973
SchI	GAGTC	3 cut(s)	1188, 1532, 1938
ScrFI	CCNGG	2 cut(s)	1198, 1794
SduI	GDGCHC	2 cut(s)	270, 2086
SexAI	ACCWGGT	1 cut(s)	1196
SfaNI	GCATC	5 cut(s)	406, 1117, 1382, 1873, 1986
SfcI	CTRYAG	1 cut(s)	2034
SfoI	GGCGCC	1 cut(s)	930
SfuI	TTCGAA	2 cut(s)	473, 647
SinI	GGWCC	3 cut(s)	584, 666, 1973
SmlI	CTYRAG	3 cut(s)	260, 400, 1937
SmoI	CTYRAG	3 cut(s)	260, 400, 1937
SphI	GCATGC	1 cut(s)	1984
SspDI	GGCGCC	1 cut(s)	928
SspMI	CTAG	6 cut(s)	101, 747, 1646, 1766, 1833, 2075
StyD4I	CCNGG	2 cut(s)	1196, 1792
StyI	CCWWGG	4 cut(s)	900, 997, 1341, 2074
TaaI	ACNGT	4 cut(s)	58, 509, 761, 958
TaiI	ACGT	3 cut(s)	156, 1318, 1435
TaqI	TCGA	7 cut(s)	84, 311, 324, 473, 486, 647, 1783
TaqII	GACCGA	1 cut(s)	1961
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	4 cut(s)	22, 25, 189, 1857
TfiI	GAWTC	4 cut(s)	221, 1322, 1382, 1772
TscAI	CASTG	4 cut(s)	51, 188, 514, 766
TseFI	GTSAC	2 cut(s)	157, 1739
TseI	GCWGC	4 cut(s)	25, 28, 31, 1358
Tsp45I	GTSAC	2 cut(s)	157, 1739
TspGWI	ACGGA	1 cut(s)	176
TspRI	CASTG	4 cut(s)	51, 188, 514, 766
Tth111I	GACNNNGTC	2 cut(s)	89, 155
Van91I	CCANNNNNTGG	1 cut(s)	785
VpaK11BI	GGWCC	3 cut(s)	584, 666, 1973
VspI	ATTAAT	1 cut(s)	1698
XapI	RAATTY	7 cut(s)	468, 992, 1291, 1331, 1522, 1685, 2090
XceI	RCATGY	4 cut(s)	301, 1480, 1861, 1984
XmaJI	CCTAGG	1 cut(s)	2074
XmiI	GTMKAC	1 cut(s)	276
XmnI	GAANNNNTTC	3 cut(s)	832, 1674, 1686
XspI	CTAG	6 cut(s)	101, 747, 1646, 1766, 1833, 2075
Zsp2I	ATGCAT	1 cut(s)	1132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.