Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006977

Physical Location & Seq

Genomic Coordinates Reverse (-)

6899352 .. 6903729

Gene Structure 4378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ42476

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2109 bp

ATGGAAAAGCACGAGCATCAGAATCCATCGAAGTCAGTGAACGACGCAGTGTACAAGCTCCAGCTGGCACTCCTCGACGGCGTCAAAACCCTAGACCACCTCTACTTAGCCGGCTCCATAATCTCCCGCTCCGACTACAACGACGTCGTTACGGAGCGATCCATCGCCGACCTATGCGGCTACCCTCTCTGCTCCAACGCCCTACCTTCCGAAGCTTCCCGTTCCCGCAAGGGTCACTATCGCATTTCGCTCAAGGAGCACAAGGTGTACGATCTCCGAGAGACGAAGCTCTACTGCTCCTCCAAGTGCGTGATCGATAGCAAGGCGTTTGCTCTGAGCTTGAGCGAGGAGAGGTGTGATATCTTGGATTTCGGAAAGGTCGAGAGGGTTTTGGGGCAATTTGGGGAAAAAGATGAACAAGGCAAGAAGGAGATTGGGGATTTGGGGATTTCTAAGTTGAAGATTGAAGAAAAGAGTGAGACTTATAGTGGGAAATTGGAGGACTGGGTTGGCCCTTCCAATGCCATTGAAGGATATGTTCCCAAAAAAGATAGGGCTTCCAAGCCGTTGGGTTCGAAGAAGATCAAACAAGGGTCCAAAGGGAAAGATACGAAGCCGAGTGGTGGTGGGAAACAATTAATTTTGAATGATATGGACTTCATGAGTACACTATTAGCTTGTGATGAATATAGTGTGTCCAAAATGCCACCAACTGTAGCGGGGAATAGTGTTGATACTACGTTAAAGGAACCAAAAGGAAAAGTTGGCGGCAAAGATTCAGAGAGCGGATTTAGTTTGTTGGAAACCTCGGCTGCTCCTAATAAGAGTGAAGTGGGTGTGATGGATGTTGGGGATTTAGGTATGTCTAGGTTGAAGATTGAAGAGAAAGTGGAATCCTTTGTTGGTAAGGCAGAGAAATCGAGTGAGGCTAGACTGAGGTCTTCTCTCAAACATTCAGGGACAAAGAAACTTAGTCGCTCTGTTACTTGGGCTGACGAAAAGATTGATAGTACCGGGAGGAGAAATCTTTGTGAGGTGAGAGACATGGAAGATGGAATTGAAAATCCTGGTGCATTTGGCAGCTTGCACAAACCTTCTACATCAAATGAAGCTGGTTCCTCTTTTAATTGGGTTGATAAGACGATTGATAGTACTAAGAGTGAAAATATTTGTGAGGTTAGAGAAATGCAAGATGCAAAAGATGTTCCTGAGGTATTAGGCAGTTCAGTCCTGCAAGACAATGAATGGTTTGAGTCAGCAGAAGCCTGTGCATCAGCATTGAGTCAGGCAGCCAGCGCTGTTGCAACTGGAGAATCTGATACTAATGATGCTGTGTCAAAAGCCGGGATTATTATATTGCCACATTCAGATGGTGTGGATGAAGAAGAGTCCATAGTGGATGATGTGTATGAAGAAGATTCCATAGAGGATAGTGTGGATGAAGAAGAGTCTACAGAGGATGTTGACATGCTTGAACCAGAGCATGCTGTTTCAAAGTGGCCAGGAAAGCCCGAAAGTTCACAGTTTGATTTATTTAACCCTGAGGATTCTTGGTTTGATGCTCCACCAGATGGTTTCAATTTAACTTTATCTCCTTTTGCAACAATGTGGAATGCACTCTTTACATGGATAACATCATCTACATTGGCTTATATATATGGAAAGGATGACAGTTCCCATGAAGAGTTTCTCTATGTCAATGGGAGAAGTTATCCCCATAAGATTGTGTTGGCAGATGGTCGGTCTTCAGAAATCAAGCTAACTGTGGGTGAATCTCTCTCTCGGGCTCTACCAGAAGTTGTTGCTGAACTAGGGCTACCAGTATCCAGTTTAGAGAAAGGAATGGGCTTCATGTTGAATACAATGTCCTTTATTGAGGCGCTACCGGCATTCAGAATGAAACAGTGGCAAGTGATTGCTCTTCTTTTCATTGAGGGCCTCTCTGTTTGTAGGATCCCGGCACTTACTTCTCGCATGACAAATAGAAGGGTACTGATTCAGAAGGTGCTGGATGGTGCCCGTATAAGTGTAGAAGAGTACGAGATTATGAAGGATTTCCTAATACCGCTTGGCCGAGCGCCTCAATTCTCATCCCAGAGTGGTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0008420 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RPAP2_Rtr1

Protein Analysis

702

Amino Acids

77.07

Weight (kDa)

4.9

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPAP2_Rtr1	PF04181	40 - 115	1.2e-22	Rtr1/RPAP2 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G26760 AT5G26760
fragaria_vesca	FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180 FvH4_6g08180
malus_domestica	MD04G1189300.v1.1 MD12G1202100.v1.1
prunus_persica	Prupe.6G306900_v2.0.a1
pyrus_communis	pycom04g16770 pycom12g18860
rosa_chinensis	RchiOBHm_Chr3g0458051
rosa_laevigata	RLG00000025177
rosa_multiflora	Rmu_sc0000384.1_g000014
rosa_roxburghii	Rroxscaffold_6G00421320
rosa_rugosa	Rorug03G0024600 Rorug03G0024600
rosa_samantha	Rh3AG085100 Rh3BG087900 Rh3CG088400 Rh3DG088800
rosa_wichuraiana	Rw0G012430 Rw3G007250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	147
AccB1I	GGYRCC	1 cut(s)	2015
AccB7I	CCANNNNNTGG	1 cut(s)	1571
AccBSI	CCGCTC	2 cut(s)	129, 786
AccI	GTMKAC	1 cut(s)	1451
AciI	CCGC	7 cut(s)	127, 177, 226, 719, 768, 786, 2066
AclWI	GGATC	3 cut(s)	153, 1948, 1961
AcoI	YGGCCR	2 cut(s)	1499, 2071
AcuI	CTGAAG	1 cut(s)	1731
AcyI	GRCGYC	2 cut(s)	81, 144
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	7 cut(s)	53, 269, 667, 1012, 1153, 1992, 2039
AfeI	AGCGCT	1 cut(s)	1297
AfiI	CCNNNNNNNGG	2 cut(s)	623, 1571
AjnI	CCWGG	2 cut(s)	1066, 1501
AjuI	GAANNNNNNNTTGG	2 cut(s)	885, 917
AluBI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 677, 1083, 1112, 1759
AluI	AGCT	9 cut(s)	58, 64, 215, 289, 339, 677, 1083, 1112, 1759
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	3 cut(s)	275, 473, 1035
AlwI	GGATC	3 cut(s)	153, 1948, 1961
Ama87I	CYCGRG	1 cut(s)	1782
Aor51HI	AGCGCT	1 cut(s)	1297
AoxI	GGCC	4 cut(s)	511, 1499, 1936, 2071
ApeKI	GCWGC	3 cut(s)	812, 1080, 1289
AseI	ATTAAT	1 cut(s)	638
Asp700I	GAANNNNTTC	2 cut(s)	1686, 2054
AspLEI	GCGC	3 cut(s)	1298, 1882, 2080
AspS9I	GGNCC	3 cut(s)	512, 594, 1936
AsuC2I	CCSGG	3 cut(s)	1015, 1345, 1958
AsuHPI	GGTGA	2 cut(s)	1048, 1781
AsuII	TTCGAA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	1782
AvaII	GGWCC	1 cut(s)	594
AxyI	CCTNAGG	2 cut(s)	1209, 1542
BaeGI	GKGCMC	1 cut(s)	2020
BalI	TGGCCA	1 cut(s)	1501
BamHI	GGATCC	1 cut(s)	1953
BanI	GGYRCC	1 cut(s)	2015
BanII	GRGCYC	1 cut(s)	1789
BauI	CACGAG	1 cut(s)	11
BbsI	GAAGAC	2 cut(s)	933, 1737
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	3 cut(s)	799, 1092, 1301
BccI	CCATC	8 cut(s)	34, 170, 835, 1046, 1364, 1565, 1730, 2006
BceAI	ACGGC	2 cut(s)	94, 550
BcgI	CGANNNNNNTGC	2 cut(s)	900, 934
BciT130I	CCWGG	2 cut(s)	1068, 1503
BciVI	GTATCC	1 cut(s)	1834
BcnI	CCSGG	3 cut(s)	1015, 1345, 1958
BcoDI	GTCTC	3 cut(s)	275, 473, 1035
BfaI	CTAG	4 cut(s)	92, 867, 930, 1811
BfmI	CTRYAG	2 cut(s)	714, 1452
BfoI	RGCGCY	3 cut(s)	1299, 1883, 2081
BfuI	GTATCC	1 cut(s)	1834
BisI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
BlsI	GCNGC	5 cut(s)	179, 770, 814, 1082, 1291
BmcAI	AGTACT	1 cut(s)	1153
Bme1390I	CCNGG	5 cut(s)	1015, 1068, 1345, 1503, 1958
Bme18I	GGWCC	1 cut(s)	594
BmeT110I	CYCGRG	1 cut(s)	1782
BmgT120I	GGNCC	3 cut(s)	512, 594, 1936
BmiI	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
BmrFI	CCNGG	5 cut(s)	1015, 1068, 1345, 1503, 1958
BmrI	ACTGGG	1 cut(s)	514
BmsI	GCATC	5 cut(s)	25, 1183, 1280, 1318, 1549
BmuI	ACTGGG	1 cut(s)	514
BoxI	GACNNNNGTC	1 cut(s)	937
BpiI	GAAGAC	2 cut(s)	933, 1737
BplI	GAGNNNNNCTC	4 cut(s)	928, 960, 1925, 1957
BpmI	CTGGAG	2 cut(s)	44, 1329
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	2 cut(s)	236, 361
BpuMI	CCSGG	3 cut(s)	1015, 1345, 1958
Bsa29I	ATCGAT	1 cut(s)	315
BsaHI	GRCGYC	2 cut(s)	81, 144
BsaJI	CCNNGG	1 cut(s)	807
BsaXI	ACNNNNNCTCC	4 cut(s)	284, 314, 1576, 1606
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 1571
Bse118I	RCCGGY	2 cut(s)	110, 1885
Bse1I	ACTGG	4 cut(s)	509, 1312, 1820, 1827
Bse21I	CCTNAGG	2 cut(s)	1209, 1542
BseBI	CCWGG	2 cut(s)	1068, 1503
BseCI	ATCGAT	1 cut(s)	315
BseDI	CCNNGG	1 cut(s)	807
BseGI	GGATG	8 cut(s)	850, 1384, 1405, 1444, 1465, 1672, 2017, 2090
BseLI	CCNNNNNNNGG	2 cut(s)	623, 1571
BseMII	CTCAG	4 cut(s)	326, 926, 1200, 1533
BseNI	ACTGG	4 cut(s)	509, 1312, 1820, 1827
BseRI	GAGGAG	4 cut(s)	62, 289, 362, 1033
BseSI	GKGCMC	1 cut(s)	2020
BseXI	GCAGC	3 cut(s)	799, 1092, 1301
BshFI	GGCC	4 cut(s)	513, 1501, 1938, 2073
BshNI	GGYRCC	1 cut(s)	2015
BshVI	ATCGAT	1 cut(s)	315
BsiHKAI	GWGCWC	1 cut(s)	261
BsiHKCI	CYCGRG	1 cut(s)	1782
BsiSI	CCGG	5 cut(s)	111, 1014, 1344, 1886, 1958
BslFI	GGGAC	1 cut(s)	973
BslI	CCNNNNNNNGG	2 cut(s)	623, 1571
BsmAI	GTCTC	3 cut(s)	275, 473, 1035
BsmBI	CGTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	973
BsmI	GAATGC	2 cut(s)	1618, 1889
BsnI	GGCC	4 cut(s)	513, 1501, 1938, 2073
BsoBI	CYCGRG	1 cut(s)	1782
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	3 cut(s)	261, 1789, 2020
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	158, 271, 312, 582, 1953
BspACI	CCGC	7 cut(s)	127, 177, 226, 719, 768, 786, 2066
BspANI	GGCC	4 cut(s)	513, 1501, 1938, 2073
BspCNI	CTCAG	4 cut(s)	327, 927, 1201, 1534
BspDI	ATCGAT	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
BspPI	GGATC	3 cut(s)	153, 1948, 1961
BspQI	GCTCTTC	1 cut(s)	1926
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	2015
BsrBI	CCGCTC	2 cut(s)	129, 786
BsrFI	RCCGGY	2 cut(s)	110, 1885
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	4 cut(s)	509, 1312, 1820, 1827
BssAI	RCCGGY	2 cut(s)	110, 1885
BssECI	CCNNGG	1 cut(s)	807
BssMI	GATC	5 cut(s)	158, 271, 312, 582, 1953
BssNI	GRCGYC	2 cut(s)	81, 144
BssSI	CACGAG	1 cut(s)	11
Bst2BI	CACGAG	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	1068, 1503
Bst4CI	ACNGT	5 cut(s)	715, 1524, 1673, 1765, 1905
Bst6I	CTCTTC	6 cut(s)	876, 1380, 1440, 1677, 1926, 2028
BstACI	GRCGYC	2 cut(s)	81, 144
BstAUI	TGTACA	1 cut(s)	51
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	5 cut(s)	66, 112, 1085, 1294, 1485
BstDEI	CTNAG	8 cut(s)	106, 335, 453, 935, 971, 1155, 1209, 1542
BstF5I	GGATG	8 cut(s)	850, 1384, 1405, 1444, 1465, 1672, 2017, 2090
BstH2I	RGCGCY	3 cut(s)	1299, 1883, 2081
BstHHI	GCGC	3 cut(s)	1298, 1882, 2080
BstKTI	GATC	5 cut(s)	161, 274, 315, 585, 1956
BstMAI	GTCTC	3 cut(s)	275, 473, 1035
BstMBI	GATC	5 cut(s)	158, 271, 312, 582, 1953
BstMWI	GCNNNNNNNGC	4 cut(s)	256, 1295, 1507, 1886
BstNI	CCWGG	2 cut(s)	1068, 1503
BstNSI	RCATGY	2 cut(s)	1471, 1487
BstPAI	GACNNNNGTC	1 cut(s)	937
BstSCI	CCNGG	5 cut(s)	1013, 1066, 1343, 1501, 1956
BstSFI	CTRYAG	2 cut(s)	714, 1452
BstSLI	GKGCMC	1 cut(s)	2020
BstV1I	GCAGC	3 cut(s)	799, 1092, 1301
BstV2I	GAAGAC	2 cut(s)	933, 1737
BstX2I	RGATCY	1 cut(s)	1953
BstXI	CCANNNNNNTGG	1 cut(s)	568
BstYI	RGATCY	1 cut(s)	1953
Bsu15I	ATCGAT	1 cut(s)	315
Bsu36I	CCTNAGG	2 cut(s)	1209, 1542
BsuI	GTATCC	1 cut(s)	1834
BsuRI	GGCC	4 cut(s)	513, 1501, 1938, 2073
BsuTUI	ATCGAT	1 cut(s)	315
BtgZI	GCGATG	1 cut(s)	148
BtsCI	GGATG	8 cut(s)	850, 1384, 1405, 1444, 1465, 1672, 2017, 2090
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	42, 54, 1910
Cac8I	GCNNGC	5 cut(s)	66, 112, 1085, 1294, 1485
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	3 cut(s)	1298, 1882, 2080
Cfr10I	RCCGGY	2 cut(s)	110, 1885
Cfr13I	GGNCC	3 cut(s)	512, 594, 1936
ClaI	ATCGAT	1 cut(s)	315
CseI	GACGC	2 cut(s)	53, 70
Csp6I	GTAC	7 cut(s)	52, 268, 666, 1011, 1152, 1991, 2038
CviAII	CATG	8 cut(s)	661, 1045, 1468, 1484, 1626, 1679, 1852, 1975
CviQI	GTAC	7 cut(s)	52, 268, 666, 1011, 1152, 1991, 2038
DdeI	CTNAG	8 cut(s)	106, 335, 453, 935, 971, 1155, 1209, 1542
DpnI	GATC	5 cut(s)	160, 273, 314, 584, 1955
DpnII	GATC	5 cut(s)	158, 271, 312, 582, 1953
DraIII	CACNNNGTG	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	1499, 2071
Eam1104I	CTCTTC	6 cut(s)	876, 1380, 1440, 1677, 1926, 2028
EarI	CTCTTC	6 cut(s)	876, 1380, 1440, 1677, 1926, 2028
Eco24I	GRGCYC	1 cut(s)	1789
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	594
Eco47III	AGCGCT	1 cut(s)	1297
Eco57I	CTGAAG	1 cut(s)	1731
Eco81I	CCTNAGG	2 cut(s)	1209, 1542
Eco88I	CYCGRG	1 cut(s)	1782
EcoO109I	RGGNCCY	1 cut(s)	1936
EcoRII	CCWGG	2 cut(s)	1066, 1501
EcoRV	GATATC	1 cut(s)	361
EcoT38I	GRGCYC	1 cut(s)	1789
Esp3I	CGTCTC	1 cut(s)	275
FaeI	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
FaqI	GGGAC	1 cut(s)	973
FatI	CATG	8 cut(s)	660, 1044, 1467, 1483, 1625, 1678, 1851, 1974
FauI	CCCGC	3 cut(s)	134, 233, 712
FblI	GTMKAC	1 cut(s)	1451
Fnu4HI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
FokI	GGATG	8 cut(s)	857, 1391, 1412, 1451, 1472, 1679, 2024, 2077
FriOI	GRGCYC	1 cut(s)	1789
Fsp4HI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
FspBI	CTAG	4 cut(s)	92, 867, 930, 1811
GlaI	GCGC	3 cut(s)	1297, 1881, 2079
GluI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
GsuI	CTGGAG	2 cut(s)	44, 1329
HaeII	RGCGCY	3 cut(s)	1299, 1883, 2081
HaeIII	GGCC	4 cut(s)	513, 1501, 1938, 2073
HapII	CCGG	5 cut(s)	111, 1014, 1344, 1886, 1958
HgaI	GACGC	2 cut(s)	53, 70
HhaI	GCGC	3 cut(s)	1298, 1882, 2080
Hin1I	GRCGYC	2 cut(s)	81, 144
Hin1II	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
Hin6I	GCGC	3 cut(s)	1296, 1880, 2078
HinP1I	GCGC	3 cut(s)	1296, 1880, 2078
HincII	GTYRAC	1 cut(s)	1465
HindII	GTYRAC	1 cut(s)	1465
HindIII	AAGCTT	1 cut(s)	213
HpaII	CCGG	5 cut(s)	111, 1014, 1344, 1886, 1958
HphI	GGTGA	2 cut(s)	1048, 1781
Hpy166II	GTNNAC	7 cut(s)	40, 52, 268, 668, 1452, 1465, 1520
Hpy188III	TCNNGA	3 cut(s)	382, 661, 1208
Hpy8I	GTNNAC	7 cut(s)	40, 52, 268, 668, 1452, 1465, 1520
Hpy99I	CGWCG	4 cut(s)	47, 80, 146, 149
HpyAV	CCTTC	8 cut(s)	216, 421, 524, 525, 1104, 1980, 1996, 2044
HpyCH4III	ACNGT	5 cut(s)	715, 1524, 1673, 1765, 1905
HpyCH4IV	ACGT	2 cut(s)	144, 740
HpyCH4V	TGCA	9 cut(s)	1073, 1087, 1189, 1196, 1234, 1271, 1304, 1601, 1616
HpyF10VI	GCNNNNNNNGC	4 cut(s)	256, 1295, 1507, 1886
HpyF3I	CTNAG	8 cut(s)	106, 335, 453, 935, 971, 1155, 1209, 1542
HpySE526I	ACGT	2 cut(s)	144, 740
Hsp92I	GRCGYC	2 cut(s)	81, 144
Hsp92II	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
HspAI	GCGC	3 cut(s)	1296, 1880, 2078
KroI	GCCGGC	1 cut(s)	110
KroNI	GCCGGC	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	158, 271, 312, 582, 1953
LguI	GCTCTTC	1 cut(s)	1926
LmnI	GCTCC	9 cut(s)	63, 119, 134, 154, 197, 256, 302, 820, 1567
Lsp1109I	GCAGC	3 cut(s)	799, 1092, 1301
LweI	GCATC	5 cut(s)	25, 1183, 1280, 1318, 1549
MaeI	CTAG	4 cut(s)	92, 867, 930, 1811
MaeII	ACGT	2 cut(s)	144, 740
MaeIII	GTNAC	3 cut(s)	148, 233, 982
MalI	GATC	5 cut(s)	160, 273, 314, 584, 1955
MbiI	CCGCTC	2 cut(s)	129, 786
MboI	GATC	5 cut(s)	158, 271, 312, 582, 1953
MflI	RGATCY	1 cut(s)	1953
MhlI	GDGCHC	3 cut(s)	261, 1789, 2020
MlsI	TGGCCA	1 cut(s)	1501
MluCI	AATT	8 cut(s)	398, 494, 635, 639, 1056, 1126, 1579, 2084
MluNI	TGGCCA	1 cut(s)	1501
MlyI	GAGTC	4 cut(s)	1262, 1291, 1397, 1457
MmeI	TCCRAC	3 cut(s)	156, 219, 780
Mox20I	TGGCCA	1 cut(s)	1501
MroNI	GCCGGC	1 cut(s)	110
MroXI	GAANNNNTTC	2 cut(s)	1686, 2054
MscI	TGGCCA	1 cut(s)	1501
MseI	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
MslI	CAYNNNNRTG	1 cut(s)	1368
Msp20I	TGGCCA	1 cut(s)	1501
MspA1I	CMGCKG	1 cut(s)	64
MspI	CCGG	5 cut(s)	111, 1014, 1344, 1886, 1958
MspR9I	CCNGG	5 cut(s)	1015, 1068, 1345, 1503, 1958
Mva1269I	GAATGC	2 cut(s)	1618, 1889
MvaI	CCWGG	2 cut(s)	1068, 1503
MwoI	GCNNNNNNNGC	4 cut(s)	256, 1295, 1507, 1886
NaeI	GCCGGC	1 cut(s)	112
NciI	CCSGG	3 cut(s)	1015, 1345, 1958
NdeII	GATC	5 cut(s)	158, 271, 312, 582, 1953
NgoMIV	GCCGGC	1 cut(s)	110
NlaIII	CATG	8 cut(s)	664, 1048, 1471, 1487, 1629, 1682, 1855, 1978
NlaIV	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
NmeAIII	GCCGAG	3 cut(s)	642, 788, 2099
NmuCI	GTSAC	1 cut(s)	233
NspI	RCATGY	2 cut(s)	1471, 1487
NspV	TTCGAA	1 cut(s)	575
PaeI	GCATGC	1 cut(s)	1487
PagI	TCATGA	1 cut(s)	660
PciSI	GCTCTTC	1 cut(s)	1926
PcsI	WCGNNNNNNNCGW	1 cut(s)	378
PctI	GAATGC	2 cut(s)	1618, 1889
PdiI	GCCGGC	1 cut(s)	112
PdmI	GAANNNNTTC	2 cut(s)	1686, 2054
PfeI	GAWTC	8 cut(s)	22, 776, 893, 1313, 1418, 1547, 1772, 1996
PflFI	GACNNNGTC	1 cut(s)	80
PflMI	CCANNNNNTGG	1 cut(s)	1571
PkrI	GCNGC	5 cut(s)	179, 770, 814, 1082, 1291
PleI	GAGTC	4 cut(s)	1261, 1290, 1396, 1456
PpsI	GAGTC	4 cut(s)	1261, 1290, 1396, 1456
PshAI	GACNNNNGTC	1 cut(s)	937
PshBI	ATTAAT	1 cut(s)	638
Psp6I	CCWGG	2 cut(s)	1066, 1501
PspGI	CCWGG	2 cut(s)	1066, 1501
PspN4I	GGNNCC	6 cut(s)	115, 595, 750, 1117, 1955, 2017
PspPI	GGNCC	3 cut(s)	512, 594, 1936
PsrI	GAACNNNNNNTAC	2 cut(s)	1800, 1832
PsuI	RGATCY	1 cut(s)	1953
PsyI	GACNNNGTC	1 cut(s)	80
PvuII	CAGCTG	1 cut(s)	64
RsaI	GTAC	7 cut(s)	53, 269, 667, 1012, 1153, 1992, 2039
RsaNI	GTAC	7 cut(s)	52, 268, 666, 1011, 1152, 1991, 2038
RseI	CAYNNNNRTG	1 cut(s)	1368
SapI	GCTCTTC	1 cut(s)	1926
SaqAI	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
SatI	GCNGC	5 cut(s)	178, 769, 813, 1081, 1290
Sau3AI	GATC	5 cut(s)	158, 271, 312, 582, 1953
Sau96I	GGNCC	3 cut(s)	512, 594, 1936
ScaI	AGTACT	1 cut(s)	1153
SchI	GAGTC	4 cut(s)	1262, 1291, 1397, 1457
ScrFI	CCNGG	5 cut(s)	1015, 1068, 1345, 1503, 1958
SduI	GDGCHC	3 cut(s)	261, 1789, 2020
SfaNI	GCATC	5 cut(s)	25, 1183, 1280, 1318, 1549
SfcI	CTRYAG	2 cut(s)	714, 1452
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	1 cut(s)	594
SmiMI	CAYNNNNRTG	1 cut(s)	1368
SmlI	CTYRAG	2 cut(s)	251, 340
SmoI	CTYRAG	2 cut(s)	251, 340
SphI	GCATGC	1 cut(s)	1487
Sse9I	AATT	8 cut(s)	398, 494, 635, 639, 1056, 1126, 1579, 2084
SsiI	CCGC	7 cut(s)	127, 177, 226, 719, 768, 786, 2066
SspI	AATATT	1 cut(s)	1168
SspMI	CTAG	4 cut(s)	92, 867, 930, 1811
StyD4I	CCNGG	5 cut(s)	1013, 1066, 1343, 1501, 1956
TaaI	ACNGT	5 cut(s)	715, 1524, 1673, 1765, 1905
TaiI	ACGT	2 cut(s)	147, 743
TaqI	TCGA	6 cut(s)	29, 75, 315, 381, 575, 920
TaqII	GACCGA	1 cut(s)	1731
TasI	AATT	8 cut(s)	398, 494, 635, 639, 1056, 1126, 1579, 2084
TatI	WGTACW	3 cut(s)	51, 665, 1151
TauI	GCSGC	2 cut(s)	180, 771
TfiI	GAWTC	8 cut(s)	22, 776, 893, 1313, 1418, 1547, 1772, 1996
Tru1I	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
Tru9I	TTAA	6 cut(s)	638, 743, 1125, 1536, 1583, 2107
TscAI	CASTG	3 cut(s)	42, 54, 1910
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	3 cut(s)	812, 1080, 1289
Tsp45I	GTSAC	1 cut(s)	233
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	3 cut(s)	42, 54, 1910
Tth111I	GACNNNGTC	1 cut(s)	80
Van91I	CCANNNNNTGG	1 cut(s)	1571
VpaK11BI	GGWCC	1 cut(s)	594
VspI	ATTAAT	1 cut(s)	638
XceI	RCATGY	2 cut(s)	1471, 1487
XmiI	GTMKAC	1 cut(s)	1451
XmnI	GAANNNNTTC	2 cut(s)	1686, 2054
XspI	CTAG	4 cut(s)	92, 867, 930, 1811
ZraI	GACGTC	1 cut(s)	145
ZrmI	AGTACT	1 cut(s)	1153

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.