Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005310

Physical Location & Seq

Genomic Coordinates Reverse (-)

9693175 .. 9694844

Gene Structure 1670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G27460.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1476 bp

ATGCTGATTCGTTGCGTTGCGGTTGCGAAGACGAGGTTCAACACCACCGGCGTAGTATCAAGGCTCGTGTCTTCACTTGCAGATGGTTCGGACACGTCATCAGTCGCAAATCGGAATAGCTTGAAGGAGATACTGAGAAAGAACGGTCCACGACGCAGCGTTACCTCTCTGCTTCAGGAACGGATCGATTCGGGTCATGCCGTCTCTTTATCGGAGCTCCGATTGATTTCCAAGCGTCTCATTAGATCAAATCGTTACGATCTCGCTCTCCAGATGATGGAGTGGATGGAGAATCAAAAAGATATTGAATTTAGTGTTTATGACATTGCTCTTAGATTGGATTTGATCATCAAAACTCATGGCTTGAAACAAGGAGAGGAGTATTTTGAGAAGCTGCTACATAGTTCTGTGTCTATGAGAGTAGCGAAATCGGCTTATCTTCCGCTTCTTCGTGCTTATGTGAAGAATAAAATGGTTAAAGAAGCGGAAGCTCTAATGGAGAAGTTGAATGGATTAGGGTTTCTTGTTACTCCACACCCGTTTAACGAAATGATGAAGCTTTATGAAGCTAGTGGTCAGTATGAGAAAGTAGTTATGGTTGTTTCGATGATGAAAGGGAATAAGATACCAAGAAACGTTCTTTCGTATAATCTTTGGATGAATGCATGTTGTGAAGTGTCTGGAGTTGCGGCTGTGGAAACGGTTTATAAGGAAATGGTTGGTGATAAGAGTGTTGAAGTTGGGTGGAGTTCGTTGTGTACTTTAGCTAATGTTTATATTAAGAGTGGTTTTGATGAGAAGGCTAGGTTGGTGCTTGAGGATGCGGAAAAGATGTTGAATAGAAGTAATAGGCTTGGATATTTCTTTCTTATCACGCTTTATGCGTCTTTAGGGAATAAGGAAGGAGTTGTTCGTTTGTGGGAAGTTTCTAAATCGGTTTGTGGTAGGATTAGTTGTGTGAACTACATATGTGTATTGTCGTCTTTGGTGAAAACTGGTGATCTTGAAGAGGCTGAAAGGGTGTTTAGTGAGTGGGAGGCTCAATGTTTTAACTATGATGTTAGGGTCTCCAATGTTCTTTTGGGTGCTTATGTGCGTAATGGAGAAATCCGGAAAGCCGAGTCATTGCATGGTTGTGTGTTGGAGAGAGGAGGTACTCCAAACTACAAGACCTGGGAAATCTTAATGGAGGGATGGGTGAAATGTGAGAATATGGAGAAAGCCATTGATGCTATGCACCAAGTGTTTGTACTAATGAGGCGGTGTCATTGGAGGCCATCCCATAACATCGTCATGGCGATTGCCGAGTACTTTGAGAAAGAGGAGAAAATTGAAGAAGCAACTGCATATGTTAGAGATTTGCATCGTCTTGGTCTTGCAAGCTTACCATTATACAGATTGTTACTTAGAATGCATGAACATGCCAAAAGACCAGCTTATGATATCTATGAAATGATGAAGTTGGACAAACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

491

Amino Acids

56.2

Weight (kDa)

8.76

Isoelectric Point (pI)

37.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27460
fragaria_vesca	FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010
malus_domestica	MD00G1136100.v1.1 MD15G1379700.v1.1
prunus_persica	Prupe.1G525900_v2.0.a1
pyrus_communis	pycom15g34030
rosa_chinensis	RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751
rosa_laevigata	RLG00000000970 RLG00000029974
rosa_multiflora	Rmu_ssc0000067.1_g000033
rosa_roxburghii	Rroxscaffold_3G00223780
rosa_rugosa	Rorug01G0070100 Rorug07G0307800
rosa_samantha	Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700
rosa_wichuraiana	Rw0G013090 Rw7G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	708
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccIII	TCCGGA	1 cut(s)	1110
AciI	CCGC	6 cut(s)	20, 443, 485, 689, 824, 1261
AclI	AACGTT	1 cut(s)	636
AclWI	GGATC	1 cut(s)	191
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	158
AdeI	CACNNNGTG	1 cut(s)	1243
AfaI	GTAC	4 cut(s)	760, 1156, 1251, 1310
AfiI	CCNNNNNNNGG	1 cut(s)	277
AflIII	ACRYGT	1 cut(s)	93
AgsI	TTSAA	9 cut(s)	40, 124, 308, 367, 508, 737, 838, 1007, 1334
AjiI	CACGTC	1 cut(s)	96
AjnI	CCWGG	1 cut(s)	1172
AjuI	GAANNNNNNNTTGG	2 cut(s)	791, 823
AluBI	AGCT	9 cut(s)	120, 217, 394, 491, 559, 569, 767, 1383, 1436
AluI	AGCT	9 cut(s)	120, 217, 394, 491, 559, 569, 767, 1383, 1436
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	3 cut(s)	208, 242, 1072
AlwI	GGATC	1 cut(s)	191
Aor13HI	TCCGGA	1 cut(s)	1110
AoxI	GGCC	1 cut(s)	1274
ApeKI	GCWGC	2 cut(s)	156, 394
ApoI	RAATTY	1 cut(s)	308
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	4 cut(s)	734, 1000, 1010, 1210
AvaII	GGWCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	219
BauI	CACGAG	1 cut(s)	65
BbsI	GAAGAC	2 cut(s)	35, 63
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	2 cut(s)	168, 381
BccI	CCATC	5 cut(s)	77, 271, 280, 1188, 1285
BceAI	ACGGC	1 cut(s)	185
BcgI	CGANNNNNNTGC	2 cut(s)	69, 103
BciT130I	CCWGG	1 cut(s)	1174
BclI	TGATCA	1 cut(s)	345
BcoDI	GTCTC	3 cut(s)	208, 242, 1072
BfaI	CTAG	2 cut(s)	570, 804
BisI	GCNGC	3 cut(s)	157, 395, 690
BlsI	GCNGC	3 cut(s)	158, 396, 691
BmcAI	AGTACT	1 cut(s)	1310
Bme1390I	CCNGG	1 cut(s)	1174
Bme18I	GGWCC	1 cut(s)	146
BmgBI	CACGTC	1 cut(s)	96
BmgT120I	GGNCC	1 cut(s)	146
BmrFI	CCNGG	1 cut(s)	1174
BmsI	GCATC	3 cut(s)	811, 1219, 1372
BpiI	GAAGAC	2 cut(s)	35, 63
BpmI	CTGGAG	2 cut(s)	254, 702
BpuEI	CTTGAG	1 cut(s)	836
Bsa29I	ATCGAT	1 cut(s)	186
BsaBI	GATNNNNATC	1 cut(s)	1362
BsaI	GGTCTC	1 cut(s)	1072
BsaJI	CCNNGG	1 cut(s)	1173
BsaWI	WCCGGW	1 cut(s)	1110
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	1 cut(s)	1000
Bse3DI	GCAATG	2 cut(s)	324, 1124
Bse8I	GATNNNNATC	1 cut(s)	1362
BseAI	TCCGGA	1 cut(s)	1110
BseBI	CCWGG	1 cut(s)	1174
BseCI	ATCGAT	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	1173
BseGI	GGATG	5 cut(s)	291, 663, 826, 1199, 1277
BseJI	GATNNNNATC	1 cut(s)	1362
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMI	GCAATG	2 cut(s)	324, 1124
BseMII	CTCAG	1 cut(s)	125
BseNI	ACTGG	1 cut(s)	1000
BseRI	GAGGAG	3 cut(s)	392, 1164, 1337
BseXI	GCAGC	2 cut(s)	168, 381
BshFI	GGCC	1 cut(s)	1276
BshVI	ATCGAT	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	2 cut(s)	48, 1111
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	3 cut(s)	208, 242, 1072
BsmBI	CGTCTC	2 cut(s)	208, 242
BsmI	GAATGC	2 cut(s)	667, 1416
BsnI	GGCC	1 cut(s)	1276
Bso31I	GGTCTC	1 cut(s)	1072
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp13I	TCCGGA	1 cut(s)	1110
Bsp143I	GATC	5 cut(s)	183, 245, 259, 345, 1000
BspACI	CCGC	6 cut(s)	20, 443, 485, 689, 824, 1261
BspANI	GGCC	1 cut(s)	1276
BspCNI	CTCAG	1 cut(s)	126
BspDI	ATCGAT	1 cut(s)	186
BspEI	TCCGGA	1 cut(s)	1110
BspPI	GGATC	1 cut(s)	191
BspTNI	GGTCTC	1 cut(s)	1072
BsrDI	GCAATG	2 cut(s)	324, 1124
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	1000
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	1173
BssMI	GATC	5 cut(s)	183, 245, 259, 345, 1000
BssSI	CACGAG	1 cut(s)	65
Bst2BI	CACGAG	1 cut(s)	65
Bst2UI	CCWGG	1 cut(s)	1174
Bst4CI	ACNGT	2 cut(s)	146, 703
Bst6I	CTCTTC	1 cut(s)	1002
BstC8I	GCNNGC	1 cut(s)	1381
BstDEI	CTNAG	3 cut(s)	134, 332, 1406
BstF5I	GGATG	5 cut(s)	291, 663, 826, 1199, 1277
BstKTI	GATC	5 cut(s)	186, 248, 262, 348, 1003
BstMAI	GTCTC	3 cut(s)	208, 242, 1072
BstMBI	GATC	5 cut(s)	183, 245, 259, 345, 1000
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 1229
BstNI	CCWGG	1 cut(s)	1174
BstNSI	RCATGY	2 cut(s)	669, 1424
BstSCI	CCNGG	1 cut(s)	1172
BstV1I	GCAGC	2 cut(s)	168, 381
BstV2I	GAAGAC	2 cut(s)	35, 63
Bsu15I	ATCGAT	1 cut(s)	186
BsuRI	GGCC	1 cut(s)	1276
BsuTUI	ATCGAT	1 cut(s)	186
BtrI	CACGTC	1 cut(s)	96
BtsCI	GGATG	5 cut(s)	291, 663, 826, 1199, 1277
Cac8I	GCNNGC	1 cut(s)	1381
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	146
ClaI	ATCGAT	1 cut(s)	186
CseI	GACGC	3 cut(s)	162, 224, 873
Csp6I	GTAC	4 cut(s)	759, 1155, 1250, 1309
CviAII	CATG	7 cut(s)	197, 359, 666, 1130, 1294, 1415, 1421
CviQI	GTAC	4 cut(s)	759, 1155, 1250, 1309
DdeI	CTNAG	3 cut(s)	134, 332, 1406
DpnI	GATC	5 cut(s)	185, 247, 261, 347, 1002
DpnII	GATC	5 cut(s)	183, 245, 259, 345, 1000
DraIII	CACNNNGTG	1 cut(s)	1243
Eam1104I	CTCTTC	1 cut(s)	1002
EarI	CTCTTC	1 cut(s)	1002
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	1 cut(s)	219
Eco31I	GGTCTC	1 cut(s)	1072
Eco32I	GATATC	1 cut(s)	1444
Eco47I	GGWCC	1 cut(s)	146
Eco53kI	GAGCTC	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	158
EcoICRI	GAGCTC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	1172
EcoRV	GATATC	1 cut(s)	1444
EcoT22I	ATGCAT	2 cut(s)	667, 1416
EcoT38I	GRGCYC	1 cut(s)	219
Esp3I	CGTCTC	2 cut(s)	208, 242
FaeI	CATG	7 cut(s)	200, 362, 669, 1133, 1297, 1418, 1424
FalI	AAGNNNNNCTT	2 cut(s)	1420, 1452
FatI	CATG	7 cut(s)	196, 358, 665, 1129, 1293, 1414, 1420
FauNDI	CATATG	2 cut(s)	968, 1348
FbaI	TGATCA	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	157, 395, 690
FokI	GGATG	5 cut(s)	298, 670, 833, 1206, 1264
FriOI	GRGCYC	1 cut(s)	219
Fsp4HI	GCNGC	3 cut(s)	157, 395, 690
FspBI	CTAG	2 cut(s)	570, 804
GluI	GCNGC	3 cut(s)	157, 395, 690
GsuI	CTGGAG	2 cut(s)	254, 702
HaeIII	GGCC	1 cut(s)	1276
HapII	CCGG	2 cut(s)	48, 1111
HgaI	GACGC	3 cut(s)	162, 224, 873
Hin1II	CATG	7 cut(s)	200, 362, 669, 1133, 1297, 1418, 1424
HindIII	AAGCTT	2 cut(s)	557, 1381
HinfI	GANTC	4 cut(s)	7, 188, 292, 1121
HpaII	CCGG	2 cut(s)	48, 1111
HphI	GGTGA	4 cut(s)	734, 1000, 1010, 1210
Hpy166II	GTNNAC	3 cut(s)	149, 759, 961
Hpy188I	TCNGA	4 cut(s)	91, 114, 214, 221
Hpy188III	TCNNGA	5 cut(s)	176, 271, 681, 1004, 1111
Hpy8I	GTNNAC	3 cut(s)	149, 759, 961
Hpy99I	CGWCG	1 cut(s)	156
HpyAV	CCTTC	3 cut(s)	118, 793, 896
HpyCH4III	ACNGT	2 cut(s)	146, 703
HpyCH4IV	ACGT	2 cut(s)	95, 636
HpyCH4V	TGCA	8 cut(s)	80, 665, 1129, 1237, 1346, 1363, 1379, 1414
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 1229
HpyF3I	CTNAG	3 cut(s)	134, 332, 1406
HpySE526I	ACGT	2 cut(s)	95, 636
Hsp92II	CATG	7 cut(s)	200, 362, 669, 1133, 1297, 1418, 1424
Kpn2I	TCCGGA	1 cut(s)	1110
Ksp22I	TGATCA	1 cut(s)	345
Kzo9I	GATC	5 cut(s)	183, 245, 259, 345, 1000
LmnI	GCTCC	2 cut(s)	214, 222
LpnPI	CCDG	9 cut(s)	61, 161, 284, 666, 981, 1124, 1159, 1186, 1446
Lsp1109I	GCAGC	2 cut(s)	168, 381
LweI	GCATC	3 cut(s)	811, 1219, 1372
MaeI	CTAG	2 cut(s)	570, 804
MaeII	ACGT	2 cut(s)	95, 636
MaeIII	GTNAC	4 cut(s)	160, 254, 526, 1401
MalI	GATC	5 cut(s)	185, 247, 261, 347, 1002
MboI	GATC	5 cut(s)	183, 245, 259, 345, 1000
MboII	GAAGA	7 cut(s)	40, 63, 431, 440, 475, 1019, 1346
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	2 cut(s)	308, 1329
MlyI	GAGTC	1 cut(s)	1130
MmeI	TCCRAC	2 cut(s)	1122, 1443
Mph1103I	ATGCAT	2 cut(s)	667, 1416
MroI	TCCGGA	1 cut(s)	1110
MseI	TTAA	5 cut(s)	477, 543, 780, 1050, 1184
MslI	CAYNNNNRTG	3 cut(s)	1134, 1292, 1419
MspI	CCGG	2 cut(s)	48, 1111
MspR9I	CCNGG	1 cut(s)	1174
Mva1269I	GAATGC	2 cut(s)	667, 1416
MvaI	CCWGG	1 cut(s)	1174
MwoI	GCNNNNNNNGC	2 cut(s)	431, 1229
NdeI	CATATG	2 cut(s)	968, 1348
NdeII	GATC	5 cut(s)	183, 245, 259, 345, 1000
NlaIII	CATG	7 cut(s)	200, 362, 669, 1133, 1297, 1418, 1424
NmeAIII	GCCGAG	2 cut(s)	1144, 1330
NsiI	ATGCAT	2 cut(s)	667, 1416
NspI	RCATGY	2 cut(s)	669, 1424
PcsI	WCGNNNNNNNCGW	1 cut(s)	881
PctI	GAATGC	2 cut(s)	667, 1416
PfeI	GAWTC	3 cut(s)	7, 188, 292
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	3 cut(s)	158, 396, 691
PleI	GAGTC	1 cut(s)	1129
PpsI	GAGTC	1 cut(s)	1129
PsiI	TTATAA	1 cut(s)	708
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	1172
PspGI	CCWGG	1 cut(s)	1172
PspPI	GGNCC	1 cut(s)	146
RsaI	GTAC	4 cut(s)	760, 1156, 1251, 1310
RsaNI	GTAC	4 cut(s)	759, 1155, 1250, 1309
RseI	CAYNNNNRTG	3 cut(s)	1134, 1292, 1419
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	5 cut(s)	477, 543, 780, 1050, 1184
SatI	GCNGC	3 cut(s)	157, 395, 690
Sau3AI	GATC	5 cut(s)	183, 245, 259, 345, 1000
Sau96I	GGNCC	1 cut(s)	146
ScaI	AGTACT	1 cut(s)	1310
SchI	GAGTC	1 cut(s)	1130
ScrFI	CCNGG	1 cut(s)	1174
SduI	GDGCHC	1 cut(s)	219
SfaNI	GCATC	3 cut(s)	811, 1219, 1372
SgrAI	CRCCGGYG	1 cut(s)	47
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	3 cut(s)	1134, 1292, 1419
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	2 cut(s)	308, 1329
SsiI	CCGC	6 cut(s)	20, 443, 485, 689, 824, 1261
SspMI	CTAG	2 cut(s)	570, 804
SstI	GAGCTC	1 cut(s)	219
StyD4I	CCNGG	1 cut(s)	1172
TaaI	ACNGT	2 cut(s)	146, 703
TaiI	ACGT	2 cut(s)	98, 639
TaqI	TCGA	2 cut(s)	186, 605
TasI	AATT	2 cut(s)	308, 1329
TatI	WGTACW	3 cut(s)	758, 1249, 1308
TauI	GCSGC	1 cut(s)	692
TfiI	GAWTC	3 cut(s)	7, 188, 292
Tru1I	TTAA	5 cut(s)	477, 543, 780, 1050, 1184
Tru9I	TTAA	5 cut(s)	477, 543, 780, 1050, 1184
TseI	GCWGC	2 cut(s)	156, 394
TspDTI	ATGAA	7 cut(s)	569, 579, 626, 674, 1431, 1464, 1472
TspGWI	ACGGA	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	1 cut(s)	308
XceI	RCATGY	2 cut(s)	669, 1424
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1078
XspI	CTAG	2 cut(s)	570, 804
ZrmI	AGTACT	1 cut(s)	1310
Zsp2I	ATGCAT	2 cut(s)	667, 1416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.