Rorug07G0307800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0005310
Physical Location & Seq
Reverse (-)
30930482 .. 30932776
2295 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0307800.1

Sequence Viewer

Length: 2295 bp
ATGTCAGTCTTACAGTTGGATAGCTTACTATACAAAATAAGCAATGTGAGTCAGTTAAGGCAGCTCCATGCCCACCTCATTCAAAATTCCCTCCACCACCAAAACCAGTGGGTGTCATTGCTCATCAACCAATGCACGCGCCTCCGTGCACCGCCGCCCTATACCCGTCTCATCTTCGACTCTACGCCTCGCCCCAACATCCATGTCTTCACCTCCATGCTCAAATATTACGCCCCTTTGGGCAATGTTTGCTCTAATCAAGTTGTTTCACTATATCAACTAATGCAGCGTTGCGAGGACTTATGTCTTGGTACCTTTGTGTACCCAGTTTTAATCAAATCGTCGGGCAGTGCCGGCATTGCGTTCCACGCGCATGTGGTGAAGTTGGGTCTTGGTTCTGATCATTATGTTCGCAATGCCATCATGAGTGTGTATTCGAAATACGGGCCGGTTGAGCATGCCCGAGACGTGTTCGATGAAATGCCTGAGAGGAGTCTTGTGGATTGGAACAACATGATTTCTGGGTATTGGAAGTGGGGGAATAAAGTTGAAGCGTGTAAACTGTTTGATATGATGCCTGAGAAGAGTGTTGTTACTTGGACTGCTATGGTTACCGGGTACGCTAGGATGAAGGATTTGGAGAATGCAAGAAGGTGTTTTGATAATATTCTGGAGAAAAATGTGGTGTCGTGGAATGCAATGCTCTCGGCTTATGCTCAGAATGGATCTCCAGAGGAGGCTTTGAGATTGTTTGATGGCATGATGGATTCTGGAGATAAACCAAATGAAACTACATGGGCAATTGTCATTTCAGTGTGTTCGTCATGTGGTAATAGTTCCATTGCAGATTTGTTTATCCAAAAGCTCAACCAGAAGCGGATGCATTTAAGTTACTTTGGCAAAACAGCGATGCTTGATATGTATGCAAAGCGTGGGAGCATCAAGAGTGCTAGAGAAGTTTTTGATGAATTGGGGGTGTATAAGAGCTCTGGGACATGGAATGCCATGATATCAGCATATGCAAGAGTCGGGAATTTGACTTCAGCTAGAGAGCTCTTCGATAAGATGCCGGAAAGAGATGTTGTCTCATGGAACTCGATGATTTCTGGTTATGCTCAGAATGGACAGTCCGCTCTTGCAATTGATCTCTTCAAAGATATGACTGCTGTTGATAACCCCAAACCAAATGAAGTCACTATGGTCAGTGTCATCTCAGCATGTGGGCATCTTGGGGCATTGGAGATAGGTAATTGGGCCGTCAACTTTCTCACAAAACATCATACCAATCTAAGTATATCAGTATACAATTCTTTGATATTCTTGTACTCTAAATGTGGAAGCATGGATGATGCCAAGAGAATATTCAACGAAATGAAACAACGAGATGTGGTTTCCTACAATACATTGATTTCAGGGTTTGCAGCTCATGGTCATGGAATGGAAGCTGTCAAGCTAAACATGAAGATGAAAGAAGAATTTATTGAGCCAAACCGTGAAACGTATATTGGTATTCTGACAGCGTGCAGCCATGCTGGGTTGTTAGAAGAAGGTTGGAAGATCTTTGAGTCGATCAAAGATCCTGATGTAGATCATTATGCATGCGTGGTTGACTTATTAGGTCGAGTGGGTAAAGTGGATGAGGCAAAAAAAATAGTTGATGGCATGCAGAAAGAGCCACATGCTGGAGTTTATGGATCTCTTTTAAATGCTAGCCGGATTCACAAAAGAATTGATCTTGGGGAGTTTGCTGCAAGCAAGCTCTTTGAGCTTGAACCACATAATTCAGGAAACTACATTTTGCTTTCGAACATATATGCCTCTGCAGGCAGGTGGGATGATGTGGTGAGAGTTAGAGAAGCAATGAGAAATGCAGGTGTGAAAAAGGCAACTGGTTGGAGTTGGGTGGAATACAATGGTAAGATGCACAAGTTCATTGCGGGAGACAGATCACACGAACTGTCAGATGAAATTTATAGGCGATTGGCAGAATTAGGGAGGAAGCTGAGGAATGCTGGCTACATTGCTGATAAGGCCTGTGTGCTAAGAGATGTTGATGAGGAAGAGAAAGAAGAGATGGTGGGTACTCATAGTGAAAAATTGGCGGTATGCTTCGCTCTTCTTGTTACAGAAGCAAAGTCAGTGATTAGAGTGGTGAAGAATCTGAGGGTGTGCAGGGATTGCCATACAGCTATTAAGATGATATCTAAGTTGGAAGGAAGGAAAATTATTTTGAGGGATAATAACAGGTTTCACCATTTCAGTGATGGGCAGTGTTCTTGCGGAGAGTATTGGTAA

Protein Analysis

764

Amino Acids

86.2

Weight (kDa)

8.14

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 226 - 273 2.3e-12 PPR repeat family
PPR PF01535 229 - 258 1.2e-08 PPR repeat
PPR PF01535 332 - 360 8.3e-08 PPR repeat
PPR_2 PF13041 359 - 408 2e-10 PPR repeat family
PPR PF01535 362 - 387 4.3e-07 PPR repeat
PPR_2 PF13041 432 - 463 3.5e-06 PPR repeat family
PPR PF01535 434 - 462 4.3e-07 PPR repeat
PPR_2 PF13041 461 - 509 1.2e-10 PPR repeat family
PPR_3 PF13812 461 - 508 1.1e-06 Pentatricopeptide repeat domain
E_motif PF20431 574 - 636 4.4e-23 E motif
DYW_deaminase PF14432 672 - 764 8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1818, 1862
Acc36I ACCTGC 2 cut(s) 1818, 1862
Acc65I GGTACC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 311
AccB7I CCANNNNNTGG 1 cut(s) 1682
AccBSI CCGCTC 1 cut(s) 1133
AccI GTMKAC 1 cut(s) 1302
AccII CGCG 2 cut(s) 139, 371
AciI CCGC 7 cut(s) 152, 155, 877, 1131, 1937, 2102, 2280
AclWI GGATC 3 cut(s) 733, 1571, 1702
AcsI RAATTY 4 cut(s) 85, 1033, 1475, 1968
AcuI CTGAAG 1 cut(s) 1026
AfaI GTAC 5 cut(s) 313, 323, 620, 1325, 2083
AfiI CCNNNNNNNGG 1 cut(s) 1682
AflIII ACRYGT 1 cut(s) 468
AgsI TTSAA 5 cut(s) 83, 551, 1153, 1366, 1772
AjiI CACGTC 1 cut(s) 469
AjuI GAANNNNNNNTTGG 4 cut(s) 1346, 1378, 1488, 1520
Alw21I GWGCWC 3 cut(s) 151, 989, 1056
Alw26I GTCTC 4 cut(s) 173, 459, 1090, 1935
Alw44I GTGCAC 1 cut(s) 147
AlwI GGATC 3 cut(s) 733, 1571, 1702
Ama87I CYCGRG 1 cut(s) 462
AoxI GGCC 3 cut(s) 446, 1254, 2031
ApaLI GTGCAC 1 cut(s) 147
ApeKI GCWGC 5 cut(s) 61, 286, 1421, 1524, 1748
ApoI RAATTY 4 cut(s) 85, 1033, 1475, 1968
Asp718I GGTACC 1 cut(s) 311
AspLEI GCGC 2 cut(s) 141, 373
AspS9I GGNCC 2 cut(s) 446, 1254
AsuC2I CCSGG 1 cut(s) 616
AsuHPI GGTGA 5 cut(s) 202, 391, 1855, 2164, 2243
AsuII TTCGAA 2 cut(s) 437, 1805
AsuNHI GCTAGC 1 cut(s) 1709
AvaI CYCGRG 1 cut(s) 462
BaeGI GKGCMC 1 cut(s) 151
BaeI ACNNNNGTAYC 2 cut(s) 303, 336
BanI GGYRCC 1 cut(s) 311
BanII GRGCYC 2 cut(s) 989, 1056
BbsI GAAGAC 1 cut(s) 199
Bbv12I GWGCWC 3 cut(s) 151, 989, 1056
BbvCI CCTCAGC 1 cut(s) 2003
BbvI GCAGC 5 cut(s) 73, 298, 1433, 1536, 1735
BccI CCATC 6 cut(s) 428, 749, 757, 1652, 2068, 2258
BceAI ACGGC 1 cut(s) 1241
BcgI CGANNNNNNTGC 2 cut(s) 687, 721
BclI TGATCA 1 cut(s) 400
BcnI CCSGG 1 cut(s) 616
BcoDI GTCTC 4 cut(s) 173, 459, 1090, 1935
BfaI CTAG 4 cut(s) 624, 951, 1047, 1710
BfmI CTRYAG 1 cut(s) 1821
BfuAI ACCTGC 2 cut(s) 1818, 1862
BglII AGATCT 1 cut(s) 1557
BisI GCNGC 6 cut(s) 62, 155, 287, 1422, 1525, 1749
BlsI GCNGC 6 cut(s) 63, 156, 288, 1423, 1526, 1750
Bme1390I CCNGG 1 cut(s) 616
BmeT110I CYCGRG 1 cut(s) 462
BmgBI CACGTC 1 cut(s) 469
BmgT120I GGNCC 2 cut(s) 446, 1254
BmiI GGNNCC 1 cut(s) 313
BmrFI CCNGG 1 cut(s) 616
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 8 cut(s) 564, 870, 900, 948, 1056, 1234, 1339, 1911
BmtI GCTAGC 1 cut(s) 1713
BmuI ACTGGG 1 cut(s) 320
BoxI GACNNNNGTC 1 cut(s) 303
BpiI GAAGAC 1 cut(s) 199
BpmI CTGGAG 4 cut(s) 692, 714, 792, 1704
Bpu10I CCTNAGC 1 cut(s) 2003
Bpu14I TTCGAA 2 cut(s) 437, 1805
BpuMI CCSGG 1 cut(s) 616
BsaBI GATNNNNATC 1 cut(s) 1587
Bsc4I CCNNNNNNNGG 1 cut(s) 1682
Bse118I RCCGGY 2 cut(s) 353, 448
Bse1I ACTGG 3 cut(s) 106, 326, 1894
Bse8I GATNNNNATC 1 cut(s) 1587
BseGI GGATG 6 cut(s) 198, 633, 885, 1351, 1642, 1840
BseJI GATNNNNATC 1 cut(s) 1587
BseLI CCNNNNNNNGG 1 cut(s) 1682
BseMII CTCAG 7 cut(s) 477, 570, 731, 1130, 1227, 1994, 2153
BseNI ACTGG 3 cut(s) 106, 326, 1894
BseRI GAGGAG 2 cut(s) 505, 749
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 5 cut(s) 73, 298, 1433, 1536, 1735
BseYI CCCAGC 1 cut(s) 1532
BsgI GTGCAG 2 cut(s) 1543, 2191
Bsh1236I CGCG 2 cut(s) 139, 371
BshFI GGCC 3 cut(s) 448, 1256, 2033
BshNI GGYRCC 1 cut(s) 311
BsiHKAI GWGCWC 3 cut(s) 151, 989, 1056
BsiHKCI CYCGRG 1 cut(s) 462
BsiSI CCGG 5 cut(s) 354, 449, 615, 1070, 1714
BslFI GGGAC 1 cut(s) 1006
BslI CCNNNNNNNGG 1 cut(s) 1682
BsmAI GTCTC 4 cut(s) 173, 459, 1090, 1935
BsmBI CGTCTC 2 cut(s) 173, 459
BsmFI GGGAC 1 cut(s) 1006
BsmI GAATGC 4 cut(s) 649, 700, 1006, 2014
BsnI GGCC 3 cut(s) 448, 1256, 2033
BsoBI CYCGRG 1 cut(s) 462
Bsp119I TTCGAA 2 cut(s) 437, 1805
Bsp1286I GDGCHC 3 cut(s) 151, 989, 1056
BspACI CCGC 7 cut(s) 152, 155, 877, 1131, 1937, 2102, 2280
BspANI GGCC 3 cut(s) 448, 1256, 2033
BspCNI CTCAG 7 cut(s) 478, 571, 730, 1129, 1226, 1995, 2154
BspFNI CGCG 2 cut(s) 139, 371
BspHI TCATGA 1 cut(s) 423
BspLI GGNNCC 1 cut(s) 313
BspMAI CTGCAG 1 cut(s) 1825
BspMI ACCTGC 2 cut(s) 1818, 1862
BspOI GCTAGC 1 cut(s) 1713
BspPI GGATC 3 cut(s) 733, 1571, 1702
BspQI GCTCTTC 2 cut(s) 1061, 2121
BspT104I TTCGAA 2 cut(s) 437, 1805
BspT107I GGYRCC 1 cut(s) 311
BsrBI CCGCTC 1 cut(s) 1133
BsrFI RCCGGY 2 cut(s) 353, 448
BsrI ACTGG 3 cut(s) 106, 326, 1894
BssAI RCCGGY 2 cut(s) 353, 448
BssNAI GTATAC 1 cut(s) 1303
Bst1107I GTATAC 1 cut(s) 1303
Bst4CI ACNGT 5 cut(s) 15, 564, 1128, 1493, 1959
Bst6I CTCTTC 6 cut(s) 578, 1061, 1154, 2055, 2064, 2121
BstAPI GCANNNNNTGC 2 cut(s) 249, 2178
BstBI TTCGAA 2 cut(s) 437, 1805
BstEII GGTNACC 1 cut(s) 610
BstF5I GGATG 6 cut(s) 198, 633, 885, 1351, 1642, 1840
BstFNI CGCG 2 cut(s) 139, 371
BstHHI GCGC 2 cut(s) 141, 373
BstMAI GTCTC 4 cut(s) 173, 459, 1090, 1935
BstMWI GCNNNNNNNGC 9 cut(s) 249, 354, 359, 368, 454, 1672, 1765, 2030, 2178
BstNSI RCATGY 6 cut(s) 377, 461, 1221, 1602, 1666, 1682
BstPAI GACNNNNGTC 1 cut(s) 303
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 1 cut(s) 614
BstSFI CTRYAG 1 cut(s) 1821
BstSLI GKGCMC 1 cut(s) 151
BstUI CGCG 2 cut(s) 139, 371
BstV1I GCAGC 5 cut(s) 73, 298, 1433, 1536, 1735
BstV2I GAAGAC 1 cut(s) 199
BstX2I RGATCY 4 cut(s) 725, 1557, 1576, 1694
BstYI RGATCY 4 cut(s) 725, 1557, 1576, 1694
BstZ17I GTATAC 1 cut(s) 1303
BsuRI GGCC 3 cut(s) 448, 1256, 2033
BtgZI GCGATG 1 cut(s) 923
BtrI CACGTC 1 cut(s) 469
BtsCI GGATG 6 cut(s) 198, 633, 885, 1351, 1642, 1840
BtsI GCAGTG 2 cut(s) 355, 2276
BtsIMutI CAGTG 7 cut(s) 113, 355, 819, 1210, 2145, 2266, 2276
BveI ACCTGC 2 cut(s) 1818, 1862
CciI TCATGA 1 cut(s) 423
CfoI GCGC 2 cut(s) 141, 373
Cfr10I RCCGGY 2 cut(s) 353, 448
Cfr13I GGNCC 2 cut(s) 446, 1254
Csp6I GTAC 5 cut(s) 312, 322, 619, 1324, 2082
CspCI CAANNNNNGTGG 2 cut(s) 89, 124
CviQI GTAC 5 cut(s) 312, 322, 619, 1324, 2082
DraI TTTAAA 1 cut(s) 1704
Eam1104I CTCTTC 6 cut(s) 578, 1061, 1154, 2055, 2064, 2121
EarI CTCTTC 6 cut(s) 578, 1061, 1154, 2055, 2064, 2121
Ecl136II GAGCTC 2 cut(s) 987, 1054
Eco147I AGGCCT 1 cut(s) 2033
Eco24I GRGCYC 2 cut(s) 989, 1056
Eco32I GATATC 2 cut(s) 1011, 2202
Eco53kI GAGCTC 2 cut(s) 987, 1054
Eco57I CTGAAG 1 cut(s) 1026
Eco88I CYCGRG 1 cut(s) 462
Eco91I GGTNACC 1 cut(s) 610
EcoICRI GAGCTC 2 cut(s) 987, 1054
EcoO65I GGTNACC 1 cut(s) 610
EcoRV GATATC 2 cut(s) 1011, 2202
EcoT22I ATGCAT 2 cut(s) 885, 1600
EcoT38I GRGCYC 2 cut(s) 989, 1056
Esp3I CGTCTC 2 cut(s) 173, 459
FaqI GGGAC 1 cut(s) 1006
FauI CCCGC 1 cut(s) 1930
FauNDI CATATG 1 cut(s) 1018
FbaI TGATCA 1 cut(s) 400
FblI GTMKAC 1 cut(s) 1302
Fnu4HI GCNGC 6 cut(s) 62, 155, 287, 1422, 1525, 1749
FokI GGATG 6 cut(s) 185, 640, 892, 1358, 1649, 1847
FriOI GRGCYC 2 cut(s) 989, 1056
Fsp4HI GCNGC 6 cut(s) 62, 155, 287, 1422, 1525, 1749
FspBI CTAG 4 cut(s) 624, 951, 1047, 1710
GlaI GCGC 2 cut(s) 140, 372
GluI GCNGC 6 cut(s) 62, 155, 287, 1422, 1525, 1749
GsaI CCCAGC 1 cut(s) 1536
GsuI CTGGAG 4 cut(s) 692, 714, 792, 1704
HaeIII GGCC 3 cut(s) 448, 1256, 2033
HapII CCGG 5 cut(s) 354, 449, 615, 1070, 1714
HhaI GCGC 2 cut(s) 141, 373
Hin6I GCGC 2 cut(s) 139, 371
HinP1I GCGC 2 cut(s) 139, 371
HincII GTYRAC 2 cut(s) 1261, 1609
HindII GTYRAC 2 cut(s) 1261, 1609
HinfI GANTC 8 cut(s) 49, 179, 493, 767, 1026, 1565, 1717, 2158
HpaII CCGG 5 cut(s) 354, 449, 615, 1070, 1714
HphI GGTGA 5 cut(s) 202, 391, 1855, 2164, 2243
Hpy166II GTNNAC 6 cut(s) 149, 322, 560, 1261, 1303, 1609
Hpy188I TCNGA 6 cut(s) 400, 720, 1119, 1515, 1963, 2163
Hpy188III TCNNGA 8 cut(s) 424, 671, 731, 771, 943, 1030, 1580, 1785
Hpy8I GTNNAC 6 cut(s) 149, 322, 560, 1261, 1303, 1609
Hpy99I CGWCG 1 cut(s) 346
HpyAV CCTTC 5 cut(s) 625, 645, 1541, 2207, 2211
HpyCH4III ACNGT 5 cut(s) 15, 564, 1128, 1493, 1959
HpyCH4IV ACGT 2 cut(s) 468, 1499
HpyF10VI GCNNNNNNNGC 9 cut(s) 249, 354, 359, 368, 454, 1672, 1765, 2030, 2178
HpySE526I ACGT 2 cut(s) 468, 1499
HspAI GCGC 2 cut(s) 139, 371
KpnI GGTACC 1 cut(s) 315
KroI GCCGGC 1 cut(s) 353
KroNI GCCGGC 1 cut(s) 355
Ksp22I TGATCA 1 cut(s) 400
LguI GCTCTTC 2 cut(s) 1061, 2121
LmnI GCTCC 2 cut(s) 69, 936
Lsp1109I GCAGC 5 cut(s) 73, 298, 1433, 1536, 1735
LweI GCATC 8 cut(s) 564, 870, 900, 948, 1056, 1234, 1339, 1911
MaeI CTAG 4 cut(s) 624, 951, 1047, 1710
MaeII ACGT 2 cut(s) 468, 1499
MaeIII GTNAC 5 cut(s) 592, 610, 890, 1192, 2122
MbiI CCGCTC 1 cut(s) 1133
MfeI CAATTG 2 cut(s) 801, 1140
MflI RGATCY 4 cut(s) 725, 1557, 1576, 1694
MhlI GDGCHC 3 cut(s) 151, 989, 1056
MlyI GAGTC 5 cut(s) 58, 173, 502, 1035, 1574
MmeI TCCRAC 3 cut(s) 1532, 1874, 2190
Mph1103I ATGCAT 2 cut(s) 885, 1600
MroNI GCCGGC 1 cut(s) 353
MseI TTAA 5 cut(s) 56, 332, 887, 1703, 2193
MslI CAYNNNNRTG 7 cut(s) 215, 372, 428, 812, 1431, 1463, 2259
MspI CCGG 5 cut(s) 354, 449, 615, 1070, 1714
MspR9I CCNGG 1 cut(s) 616
MunI CAATTG 2 cut(s) 801, 1140
Mva1269I GAATGC 4 cut(s) 649, 700, 1006, 2014
MvnI CGCG 2 cut(s) 139, 371
MwoI GCNNNNNNNGC 9 cut(s) 249, 354, 359, 368, 454, 1672, 1765, 2030, 2178
NaeI GCCGGC 1 cut(s) 355
NciI CCSGG 1 cut(s) 616
NdeI CATATG 1 cut(s) 1018
NgoMIV GCCGGC 1 cut(s) 353
NheI GCTAGC 1 cut(s) 1709
NlaIV GGNNCC 1 cut(s) 313
NmeAIII GCCGAG 1 cut(s) 686
NmuCI GTSAC 1 cut(s) 1192
NsiI ATGCAT 2 cut(s) 885, 1600
NspI RCATGY 6 cut(s) 377, 461, 1221, 1602, 1666, 1682
NspV TTCGAA 2 cut(s) 437, 1805
PaeI GCATGC 3 cut(s) 461, 1602, 1666
PagI TCATGA 1 cut(s) 423
PaqCI CACCTGC 2 cut(s) 1818, 1862
PceI AGGCCT 1 cut(s) 2033
PciSI GCTCTTC 2 cut(s) 1061, 2121
PctI GAATGC 4 cut(s) 649, 700, 1006, 2014
PdiI GCCGGC 1 cut(s) 355
PfeI GAWTC 3 cut(s) 767, 1717, 2158
PflMI CCANNNNNTGG 1 cut(s) 1682
PkrI GCNGC 6 cut(s) 63, 156, 288, 1423, 1526, 1750
PleI GAGTC 5 cut(s) 57, 173, 501, 1034, 1573
PpsI GAGTC 5 cut(s) 57, 173, 501, 1034, 1573
PshAI GACNNNNGTC 1 cut(s) 303
Psp124BI GAGCTC 2 cut(s) 989, 1056
PspEI GGTNACC 1 cut(s) 610
PspFI CCCAGC 1 cut(s) 1532
PspN4I GGNNCC 1 cut(s) 313
PspPI GGNCC 2 cut(s) 446, 1254
PstI CTGCAG 1 cut(s) 1825
PsuI RGATCY 4 cut(s) 725, 1557, 1576, 1694
RsaI GTAC 5 cut(s) 313, 323, 620, 1325, 2083
RsaNI GTAC 5 cut(s) 312, 322, 619, 1324, 2082
RseI CAYNNNNRTG 7 cut(s) 215, 372, 428, 812, 1431, 1463, 2259
SacI GAGCTC 2 cut(s) 989, 1056
SapI GCTCTTC 2 cut(s) 1061, 2121
SaqAI TTAA 5 cut(s) 56, 332, 887, 1703, 2193
SatI GCNGC 6 cut(s) 62, 155, 287, 1422, 1525, 1749
Sau96I GGNCC 2 cut(s) 446, 1254
SchI GAGTC 5 cut(s) 58, 173, 502, 1035, 1574
ScrFI CCNGG 1 cut(s) 616
SduI GDGCHC 3 cut(s) 151, 989, 1056
SfaNI GCATC 8 cut(s) 564, 870, 900, 948, 1056, 1234, 1339, 1911
SfcI CTRYAG 1 cut(s) 1821
SfuI TTCGAA 2 cut(s) 437, 1805
SmiMI CAYNNNNRTG 7 cut(s) 215, 372, 428, 812, 1431, 1463, 2259
SphI GCATGC 3 cut(s) 461, 1602, 1666
SseBI AGGCCT 1 cut(s) 2033
SsiI CCGC 7 cut(s) 152, 155, 877, 1131, 1937, 2102, 2280
SspI AATATT 3 cut(s) 227, 667, 1362
SspMI CTAG 4 cut(s) 624, 951, 1047, 1710
SstI GAGCTC 2 cut(s) 989, 1056
StuI AGGCCT 1 cut(s) 2033
StyD4I CCNGG 1 cut(s) 614
TaaI ACNGT 5 cut(s) 15, 564, 1128, 1493, 1959
TaiI ACGT 2 cut(s) 471, 1502
TaqI TCGA 8 cut(s) 177, 437, 474, 1059, 1097, 1568, 1621, 1805
TatI WGTACW 1 cut(s) 1323
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 767, 1717, 2158
Tru1I TTAA 5 cut(s) 56, 332, 887, 1703, 2193
Tru9I TTAA 5 cut(s) 56, 332, 887, 1703, 2193
TscAI CASTG 7 cut(s) 113, 355, 819, 1210, 2145, 2266, 2276
TseFI GTSAC 1 cut(s) 1192
TseI GCWGC 5 cut(s) 61, 286, 1421, 1524, 1748
Tsp45I GTSAC 1 cut(s) 1192
TspGWI ACGGA 1 cut(s) 134
TspRI CASTG 7 cut(s) 113, 355, 819, 1210, 2145, 2266, 2276
Van91I CCANNNNNTGG 1 cut(s) 1682
VneI GTGCAC 1 cut(s) 147
XapI RAATTY 4 cut(s) 85, 1033, 1475, 1968
XceI RCATGY 6 cut(s) 377, 461, 1221, 1602, 1666, 1682
XcmI CCANNNNNNNNNTGG 1 cut(s) 2261
XmiI GTMKAC 1 cut(s) 1302
XspI CTAG 4 cut(s) 624, 951, 1047, 1710
Zsp2I ATGCAT 2 cut(s) 885, 1600
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.