Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00584

Orthogroup ID

OG0005310

Physical Location & Seq

Genomic Coordinates Reverse (-)

3775 .. 5530

Gene Structure 1756 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G013090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGAGAGCAACTCAGGTTCTTCATCTTCACCTTCATCTTCTTCGACGGAAGCGAGATTTGAGGCTATACATGAACAGTTTCGTAGTGGTCTCGTTCCGGTGCAGAAGCTTGGTGGGATGGGGCTGGTAGTGAGCCCTCATTTGTATAATGAGATGATGAAGTTGTATACGGCCATGGCGCAGTTTGGGAAGGTACCGCTTATACCTCTGACTGGTCTTTCGTATAATCTTTGTATGAATGCGTGTGCAGAGCTATCTGGGGTTGCTTCGGTTGAGATGGTTTATAGAGAAATGGTGAGTGATGAGAATGTTCAGGTTGGATGGAGCACGTTATCTACTTTGGCTGGTATTTATATGAAAGCAGGCCTTATTGACAAAGCCAAGTTGGCCTTAAGAAATGCTGAAAAGAAGCTGTCTAATAGAAATCGCCTTGGTTATTTCTTCCTCATTGCACTGTGTACGTCGTTAGAGACTAGTAAGAGAGTAGCTGGGAGAATTCCAAGTACCAACTACATGCATATATTATTGTGCTTGGTTAAGCTAGGTGATATTATAGAAGCCGAGGGGATTTTTAGGAATGGGAGTCAGTTTGCTTTAGGTATGATGTTCGAGTCTCCAGTTCATTACATCAGCGCACATTGGATAGAGGCGGTTGCCCATGACATGGGAGATTCTTATGGAAGGAAGGCTGAAAAAGTTGAAGCAATGAAACAAGGATTTGCAATGTTGCAAGACTGTCATTGGAGGCCATCAGATGATACTGTTATGGCCTTTGCTGATTATTTGAAAGGCAAGGAAAATTTGAGGATGCAAATTGGTATATATGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

276

Amino Acids

30.55

Weight (kDa)

6.66

Isoelectric Point (pI)

45.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27460
fragaria_vesca	FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010
malus_domestica	MD00G1136100.v1.1 MD15G1379700.v1.1
prunus_persica	Prupe.1G525900_v2.0.a1
pyrus_communis	pycom15g34030
rosa_chinensis	RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751
rosa_laevigata	RLG00000000970 RLG00000029974
rosa_multiflora	Rmu_ssc0000067.1_g000033
rosa_roxburghii	Rroxscaffold_3G00223780
rosa_rugosa	Rorug01G0070100 Rorug07G0307800
rosa_samantha	Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700
rosa_wichuraiana	Rw0G013090 Rw7G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	664
AccI	GTMKAC	1 cut(s)	167
AciI	CCGC	2 cut(s)	197, 650
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	2 cut(s)	495, 799
AfaI	GTAC	3 cut(s)	195, 460, 505
AfiI	CCNNNNNNNGG	2 cut(s)	212, 664
AflII	CTTAAG	1 cut(s)	391
AgsI	TTSAA	2 cut(s)	701, 787
AhlI	ACTAGT	1 cut(s)	473
AluBI	AGCT	5 cut(s)	109, 253, 412, 488, 541
AluI	AGCT	5 cut(s)	109, 253, 412, 488, 541
Alw21I	GWGCWC	1 cut(s)	329
Alw26I	GTCTC	3 cut(s)	95, 464, 618
AoxI	GGCC	5 cut(s)	171, 364, 387, 746, 768
ApoI	RAATTY	2 cut(s)	495, 799
ArsI	GACNNNNNNTTYG	2 cut(s)	202, 234
Asp700I	GAANNNNTTC	1 cut(s)	78
Asp718I	GGTACC	1 cut(s)	193
AspLEI	GCGC	2 cut(s)	181, 635
AsuHPI	GGTGA	3 cut(s)	21, 307, 557
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	137
Bbv12I	GWGCWC	1 cut(s)	329
BccI	CCATC	4 cut(s)	112, 271, 315, 757
BceAI	ACGGC	1 cut(s)	186
BcoDI	GTCTC	3 cut(s)	95, 464, 618
BcuI	ACTAGT	1 cut(s)	473
BfaI	CTAG	2 cut(s)	474, 542
BfrI	CTTAAG	1 cut(s)	391
BglI	GCCNNNNNGGC	1 cut(s)	386
BmiI	GGNNCC	1 cut(s)	195
BmsI	GCATC	1 cut(s)	798
BplI	GAGNNNNNCTC	1 cut(s)	28
BpmI	CTGGAG	1 cut(s)	600
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	3 cut(s)	174, 430, 561
BsaWI	WCCGGW	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	2 cut(s)	212, 664
Bse1I	ACTGG	2 cut(s)	217, 617
Bse3DI	GCAATG	3 cut(s)	447, 711, 729
BseDI	CCNNGG	3 cut(s)	174, 430, 561
BseGI	GGATG	3 cut(s)	123, 326, 813
BseLI	CCNNNNNNNGG	2 cut(s)	212, 664
BseMI	GCAATG	3 cut(s)	447, 711, 729
BseMII	CTCAG	1 cut(s)	27
BseNI	ACTGG	2 cut(s)	217, 617
BseYI	CCCAGC	1 cut(s)	488
BsgI	GTGCAG	2 cut(s)	122, 267
BshFI	GGCC	5 cut(s)	173, 366, 389, 748, 770
BshNI	GGYRCC	1 cut(s)	193
BsiHKAI	GWGCWC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	98
BslI	CCNNNNNNNGG	2 cut(s)	212, 664
BsmAI	GTCTC	3 cut(s)	95, 464, 618
BsmI	GAATGC	1 cut(s)	244
BsnI	GGCC	5 cut(s)	173, 366, 389, 748, 770
Bso31I	GGTCTC	1 cut(s)	95
Bsp1286I	GDGCHC	2 cut(s)	137, 329
Bsp19I	CCATGG	1 cut(s)	174
BspACI	CCGC	2 cut(s)	197, 650
BspANI	GGCC	5 cut(s)	173, 366, 389, 748, 770
BspCNI	CTCAG	1 cut(s)	26
BspLI	GGNNCC	1 cut(s)	195
BspT107I	GGYRCC	1 cut(s)	193
BspTI	CTTAAG	1 cut(s)	391
BspTNI	GGTCTC	1 cut(s)	95
BsrDI	GCAATG	3 cut(s)	447, 711, 729
BsrI	ACTGG	2 cut(s)	217, 617
BssECI	CCNNGG	3 cut(s)	174, 430, 561
BssNAI	GTATAC	1 cut(s)	168
BssT1I	CCWWGG	2 cut(s)	174, 430
Bst1107I	GTATAC	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	78, 456, 737, 763
BstAFI	CTTAAG	1 cut(s)	391
BstC8I	GCNNGC	1 cut(s)	364
BstDEI	CTNAG	1 cut(s)	13
BstDSI	CCRYGG	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	123, 326, 813
BstHHI	GCGC	2 cut(s)	181, 635
BstMAI	GTCTC	3 cut(s)	95, 464, 618
BstMWI	GCNNNNNNNGC	1 cut(s)	386
BstNSI	RCATGY	1 cut(s)	517
BstZ17I	GTATAC	1 cut(s)	168
BsuRI	GGCC	5 cut(s)	173, 366, 389, 748, 770
BtgI	CCRYGG	1 cut(s)	174
BtsCI	GGATG	3 cut(s)	123, 326, 813
BtsIMutI	CAGTG	1 cut(s)	452
Cac8I	GCNNGC	1 cut(s)	364
CfoI	GCGC	2 cut(s)	181, 635
Csp6I	GTAC	3 cut(s)	194, 459, 504
CviAII	CATG	5 cut(s)	71, 175, 514, 659, 664
CviQI	GTAC	3 cut(s)	194, 459, 504
DdeI	CTNAG	1 cut(s)	13
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	2 cut(s)	174, 430
Eco147I	AGGCCT	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	137
Eco31I	GGTCTC	1 cut(s)	95
EcoRI	GAATTC	1 cut(s)	495
EcoT14I	CCWWGG	2 cut(s)	174, 430
EcoT22I	ATGCAT	1 cut(s)	519
EcoT38I	GRGCYC	1 cut(s)	137
ErhI	CCWWGG	2 cut(s)	174, 430
FaeI	CATG	5 cut(s)	74, 178, 517, 662, 667
FalI	AAGNNNNNCTT	4 cut(s)	351, 383, 374, 406
FatI	CATG	5 cut(s)	70, 174, 513, 658, 663
FblI	GTMKAC	1 cut(s)	167
FokI	GGATG	3 cut(s)	130, 333, 820
FriOI	GRGCYC	1 cut(s)	137
FspBI	CTAG	2 cut(s)	474, 542
GlaI	GCGC	2 cut(s)	180, 634
GsaI	CCCAGC	1 cut(s)	492
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	5 cut(s)	173, 366, 389, 748, 770
HapII	CCGG	1 cut(s)	98
HhaI	GCGC	2 cut(s)	181, 635
Hin1II	CATG	5 cut(s)	74, 178, 517, 662, 667
Hin6I	GCGC	2 cut(s)	179, 633
HinP1I	GCGC	2 cut(s)	179, 633
HindIII	AAGCTT	1 cut(s)	107
HinfI	GANTC	3 cut(s)	583, 611, 671
HpaII	CCGG	1 cut(s)	98
HphI	GGTGA	3 cut(s)	21, 307, 557
Hpy166II	GTNNAC	2 cut(s)	168, 459
Hpy188I	TCNGA	2 cut(s)	210, 754
Hpy8I	GTNNAC	2 cut(s)	168, 459
Hpy99I	CGWCG	2 cut(s)	49, 466
HpyAV	CCTTC	4 cut(s)	42, 184, 675, 679
HpyCH4III	ACNGT	4 cut(s)	78, 456, 737, 763
HpyCH4IV	ACGT	2 cut(s)	329, 461
HpyCH4V	TGCA	7 cut(s)	103, 248, 452, 517, 722, 730, 811
HpyF10VI	GCNNNNNNNGC	1 cut(s)	386
HpyF3I	CTNAG	1 cut(s)	13
HpySE526I	ACGT	2 cut(s)	329, 461
Hsp92II	CATG	5 cut(s)	74, 178, 517, 662, 667
HspAI	GCGC	2 cut(s)	179, 633
KpnI	GGTACC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	324
LpnPI	CCDG	9 cut(s)	110, 111, 198, 243, 299, 330, 348, 474, 630
LweI	GCATC	1 cut(s)	798
MaeI	CTAG	2 cut(s)	474, 542
MaeII	ACGT	2 cut(s)	329, 461
MboII	GAAGA	5 cut(s)	12, 18, 30, 33, 433
MhlI	GDGCHC	2 cut(s)	137, 329
MluCI	AATT	3 cut(s)	495, 799, 813
MlyI	GAGTC	2 cut(s)	592, 620
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	8 cut(s)	55, 147, 216, 455, 556, 640, 738, 798
Mph1103I	ATGCAT	1 cut(s)	519
MroXI	GAANNNNTTC	1 cut(s)	78
MseI	TTAA	2 cut(s)	392, 537
MspCI	CTTAAG	1 cut(s)	391
MspI	CCGG	1 cut(s)	98
Mva1269I	GAATGC	1 cut(s)	244
MwoI	GCNNNNNNNGC	1 cut(s)	386
NcoI	CCATGG	1 cut(s)	174
NlaIII	CATG	5 cut(s)	74, 178, 517, 662, 667
NlaIV	GGNNCC	1 cut(s)	195
NmeAIII	GCCGAG	1 cut(s)	586
NsiI	ATGCAT	1 cut(s)	519
NspI	RCATGY	1 cut(s)	517
PceI	AGGCCT	1 cut(s)	366
PcsI	WCGNNNNNNNCGW	1 cut(s)	50
PctI	GAATGC	1 cut(s)	244
PdmI	GAANNNNTTC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	671
PflMI	CCANNNNNTGG	1 cut(s)	664
PleI	GAGTC	2 cut(s)	591, 619
PpsI	GAGTC	2 cut(s)	591, 619
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	1 cut(s)	195
RsaI	GTAC	3 cut(s)	195, 460, 505
RsaNI	GTAC	3 cut(s)	194, 459, 504
SaqAI	TTAA	2 cut(s)	392, 537
SchI	GAGTC	2 cut(s)	592, 620
SduI	GDGCHC	2 cut(s)	137, 329
SfaNI	GCATC	1 cut(s)	798
SmlI	CTYRAG	1 cut(s)	391
SmoI	CTYRAG	1 cut(s)	391
SpeI	ACTAGT	1 cut(s)	473
Sse9I	AATT	3 cut(s)	495, 799, 813
SseBI	AGGCCT	1 cut(s)	366
SsiI	CCGC	2 cut(s)	197, 650
SspMI	CTAG	2 cut(s)	474, 542
StuI	AGGCCT	1 cut(s)	366
StyI	CCWWGG	2 cut(s)	174, 430
TaaI	ACNGT	4 cut(s)	78, 456, 737, 763
TaiI	ACGT	2 cut(s)	332, 464
TaqI	TCGA	2 cut(s)	44, 609
TasI	AATT	3 cut(s)	495, 799, 813
TfiI	GAWTC	1 cut(s)	671
Tru1I	TTAA	2 cut(s)	392, 537
Tru9I	TTAA	2 cut(s)	392, 537
TscAI	CASTG	1 cut(s)	459
TspDTI	ATGAA	8 cut(s)	12, 24, 87, 173, 251, 371, 611, 722
TspGWI	ACGGA	1 cut(s)	62
TspRI	CASTG	1 cut(s)	459
Van91I	CCANNNNNTGG	1 cut(s)	664
Vha464I	CTTAAG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	495, 799
XceI	RCATGY	1 cut(s)	517
XmiI	GTMKAC	1 cut(s)	167
XmnI	GAANNNNTTC	1 cut(s)	78
XspI	CTAG	2 cut(s)	474, 542
Zsp2I	ATGCAT	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.