Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G27460 |
| fragaria_vesca | FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 |
| malus_domestica | MD00G1136100.v1.1 MD15G1379700.v1.1 |
| prunus_persica | Prupe.1G525900_v2.0.a1 |
| pyrus_communis | pycom15g34030 |
| rosa_chinensis | RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751 |
| rosa_laevigata | RLG00000000970 RLG00000029974 |
| rosa_multiflora | Rmu_ssc0000067.1_g000033 |
| rosa_roxburghii | Rroxscaffold_3G00223780 |
| rosa_rugosa | Rorug01G0070100 Rorug07G0307800 |
| rosa_samantha | Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700 |
| rosa_wichuraiana | Rw0G013090 Rw7G038370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 411 |
| AclWI | GGATC | 1 cut(s) | 167 |
| AcsI | RAATTY | 2 cut(s) | 40, 237 |
| AcuI | CTGAAG | 1 cut(s) | 426 |
| AcyI | GRCGYC | 1 cut(s) | 488 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 201 |
| AgsI | TTSAA | 3 cut(s) | 329, 346, 545 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 542, 574 |
| AluBI | AGCT | 4 cut(s) | 262, 324, 422, 616 |
| AluI | AGCT | 4 cut(s) | 262, 324, 422, 616 |
| AlwI | GGATC | 1 cut(s) | 167 |
| ApoI | RAATTY | 2 cut(s) | 40, 237 |
| AspS9I | GGNCC | 1 cut(s) | 351 |
| AsuC2I | CCSGG | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 1 cut(s) | 485 |
| AvaII | GGWCC | 1 cut(s) | 351 |
| BbvCI | CCTCAGC | 1 cut(s) | 423 |
| BccI | CCATC | 1 cut(s) | 516 |
| BcnI | CCSGG | 1 cut(s) | 196 |
| BfaI | CTAG | 1 cut(s) | 530 |
| BglII | AGATCT | 1 cut(s) | 121 |
| Bme1390I | CCNGG | 1 cut(s) | 196 |
| Bme18I | GGWCC | 1 cut(s) | 351 |
| BmgT120I | GGNCC | 1 cut(s) | 351 |
| BmrFI | CCNGG | 1 cut(s) | 196 |
| BmsI | GCATC | 2 cut(s) | 220, 667 |
| BpmI | CTGGAG | 1 cut(s) | 240 |
| Bpu10I | CCTNAGC | 1 cut(s) | 423 |
| BpuMI | CCSGG | 1 cut(s) | 196 |
| BsaBI | GATNNNNATC | 1 cut(s) | 21 |
| BsaHI | GRCGYC | 1 cut(s) | 488 |
| BsaJI | CCNNGG | 2 cut(s) | 195, 693 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 201 |
| Bse8I | GATNNNNATC | 1 cut(s) | 21 |
| BseDI | CCNNGG | 2 cut(s) | 195, 693 |
| BseGI | GGATG | 1 cut(s) | 235 |
| BseJI | GATNNNNATC | 1 cut(s) | 21 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 201 |
| BseMII | CTCAG | 2 cut(s) | 65, 414 |
| BseRI | GAGGAG | 3 cut(s) | 181, 440, 599 |
| BseYI | CCCAGC | 1 cut(s) | 146 |
| Bsh1285I | CGRYCG | 1 cut(s) | 25 |
| BsiEI | CGRYCG | 1 cut(s) | 25 |
| BsiSI | CCGG | 1 cut(s) | 195 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 201 |
| Bsp143I | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| Bsp19I | CCATGG | 1 cut(s) | 693 |
| BspCNI | CTCAG | 2 cut(s) | 64, 415 |
| BspPI | GGATC | 1 cut(s) | 167 |
| BssECI | CCNNGG | 2 cut(s) | 195, 693 |
| BssMI | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| BssNI | GRCGYC | 1 cut(s) | 488 |
| BssT1I | CCWWGG | 1 cut(s) | 693 |
| Bst4CI | ACNGT | 3 cut(s) | 137, 456, 465 |
| Bst6I | CTCTTC | 4 cut(s) | 77, 104, 270, 540 |
| BstACI | GRCGYC | 1 cut(s) | 488 |
| BstDEI | CTNAG | 2 cut(s) | 51, 423 |
| BstDSI | CCRYGG | 1 cut(s) | 693 |
| BstF5I | GGATG | 1 cut(s) | 235 |
| BstKTI | GATC | 5 cut(s) | 25, 57, 124, 175, 246 |
| BstMBI | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| BstMCI | CGRYCG | 1 cut(s) | 25 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 330 |
| BstSCI | CCNGG | 1 cut(s) | 194 |
| BstX2I | RGATCY | 2 cut(s) | 121, 172 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 183 |
| BstYI | RGATCY | 2 cut(s) | 121, 172 |
| BtgI | CCRYGG | 1 cut(s) | 693 |
| BtsCI | GGATG | 1 cut(s) | 235 |
| Cfr13I | GGNCC | 1 cut(s) | 351 |
| CseI | GACGC | 1 cut(s) | 477 |
| CviAII | CATG | 1 cut(s) | 694 |
| CviJI | RGCY | 9 cut(s) | 47, 262, 324, 404, 422, 507, 575, 616, 692 |
| CviKI_1 | RGCY | 9 cut(s) | 47, 262, 324, 404, 422, 507, 575, 616, 692 |
| DdeI | CTNAG | 2 cut(s) | 51, 423 |
| DpnI | GATC | 5 cut(s) | 24, 56, 123, 174, 245 |
| DpnII | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| Eam1104I | CTCTTC | 4 cut(s) | 77, 104, 270, 540 |
| EarI | CTCTTC | 4 cut(s) | 77, 104, 270, 540 |
| Eco130I | CCWWGG | 1 cut(s) | 693 |
| Eco47I | GGWCC | 1 cut(s) | 351 |
| Eco57I | CTGAAG | 1 cut(s) | 426 |
| EcoRI | GAATTC | 1 cut(s) | 40 |
| EcoT14I | CCWWGG | 1 cut(s) | 693 |
| EcoT22I | ATGCAT | 1 cut(s) | 682 |
| ErhI | CCWWGG | 1 cut(s) | 693 |
| FaeI | CATG | 1 cut(s) | 697 |
| FaiI | YATR | 6 cut(s) | 310, 440, 606, 659, 695, 709 |
| FatI | CATG | 1 cut(s) | 693 |
| FblI | GTMKAC | 1 cut(s) | 411 |
| FokI | GGATG | 1 cut(s) | 242 |
| FspBI | CTAG | 1 cut(s) | 530 |
| GsaI | CCCAGC | 1 cut(s) | 150 |
| GsuI | CTGGAG | 1 cut(s) | 240 |
| HapII | CCGG | 1 cut(s) | 195 |
| HgaI | GACGC | 1 cut(s) | 477 |
| Hin1I | GRCGYC | 1 cut(s) | 488 |
| Hin1II | CATG | 1 cut(s) | 697 |
| HinfI | GANTC | 3 cut(s) | 104, 565, 703 |
| HpaII | CCGG | 1 cut(s) | 195 |
| HphI | GGTGA | 1 cut(s) | 485 |
| Hpy166II | GTNNAC | 2 cut(s) | 189, 412 |
| Hpy188I | TCNGA | 3 cut(s) | 54, 460, 513 |
| Hpy188III | TCNNGA | 4 cut(s) | 58, 219, 562, 569 |
| Hpy8I | GTNNAC | 2 cut(s) | 189, 412 |
| Hpy99I | CGWCG | 2 cut(s) | 141, 493 |
| HpyAV | CCTTC | 3 cut(s) | 86, 195, 287 |
| HpyCH4III | ACNGT | 3 cut(s) | 137, 456, 465 |
| HpyCH4V | TGCA | 2 cut(s) | 500, 680 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 330 |
| HpyF3I | CTNAG | 2 cut(s) | 51, 423 |
| Hsp92I | GRCGYC | 1 cut(s) | 488 |
| Hsp92II | CATG | 1 cut(s) | 697 |
| Kzo9I | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| LmnI | GCTCC | 3 cut(s) | 419, 613, 697 |
| LpnPI | CCDG | 8 cut(s) | 132, 204, 208, 255, 349, 380, 547, 554 |
| LweI | GCATC | 2 cut(s) | 220, 667 |
| MaeI | CTAG | 1 cut(s) | 530 |
| MaeIII | GTNAC | 2 cut(s) | 473, 525 |
| MalI | GATC | 5 cut(s) | 24, 56, 123, 174, 245 |
| MboI | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| MfeI | CAATTG | 2 cut(s) | 346, 446 |
| MflI | RGATCY | 2 cut(s) | 121, 172 |
| MluCI | AATT | 6 cut(s) | 40, 237, 346, 355, 446, 540 |
| MmeI | TCCRAC | 1 cut(s) | 438 |
| MnlI | CCTC | 9 cut(s) | 107, 159, 217, 418, 507, 541, 565, 577, 580 |
| Mph1103I | ATGCAT | 1 cut(s) | 682 |
| MseI | TTAA | 2 cut(s) | 579, 651 |
| MspI | CCGG | 1 cut(s) | 195 |
| MspR9I | CCNGG | 1 cut(s) | 196 |
| MunI | CAATTG | 2 cut(s) | 346, 446 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 330 |
| NciI | CCSGG | 1 cut(s) | 196 |
| NcoI | CCATGG | 1 cut(s) | 693 |
| NdeII | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| NlaIII | CATG | 1 cut(s) | 697 |
| NmuCI | GTSAC | 1 cut(s) | 473 |
| NsiI | ATGCAT | 1 cut(s) | 682 |
| PfeI | GAWTC | 2 cut(s) | 104, 565 |
| Ple19I | CGATCG | 1 cut(s) | 25 |
| PspFI | CCCAGC | 1 cut(s) | 146 |
| PspPI | GGNCC | 1 cut(s) | 351 |
| PsuI | RGATCY | 2 cut(s) | 121, 172 |
| PvuI | CGATCG | 1 cut(s) | 25 |
| SaqAI | TTAA | 2 cut(s) | 579, 651 |
| Sau3AI | GATC | 5 cut(s) | 22, 54, 121, 172, 243 |
| Sau96I | GGNCC | 1 cut(s) | 351 |
| ScrFI | CCNGG | 1 cut(s) | 196 |
| SetI | ASST | 7 cut(s) | 206, 228, 264, 326, 338, 424, 618 |
| SfaNI | GCATC | 2 cut(s) | 220, 667 |
| SinI | GGWCC | 1 cut(s) | 351 |
| Sse9I | AATT | 6 cut(s) | 40, 237, 346, 355, 446, 540 |
| SspMI | CTAG | 1 cut(s) | 530 |
| StyD4I | CCNGG | 1 cut(s) | 194 |
| StyI | CCWWGG | 1 cut(s) | 693 |
| TaaI | ACNGT | 3 cut(s) | 137, 456, 465 |
| TaqI | TCGA | 2 cut(s) | 107, 246 |
| TasI | AATT | 6 cut(s) | 40, 237, 346, 355, 446, 540 |
| TfiI | GAWTC | 2 cut(s) | 104, 565 |
| Tru1I | TTAA | 2 cut(s) | 579, 651 |
| Tru9I | TTAA | 2 cut(s) | 579, 651 |
| TseFI | GTSAC | 1 cut(s) | 473 |
| Tsp45I | GTSAC | 1 cut(s) | 473 |
| TspDTI | ATGAA | 5 cut(s) | 303, 549, 621, 680, 701 |
| VpaK11BI | GGWCC | 1 cut(s) | 351 |
| XapI | RAATTY | 2 cut(s) | 40, 237 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 183, 361 |
| XmiI | GTMKAC | 1 cut(s) | 411 |
| XspI | CTAG | 1 cut(s) | 530 |
| Zsp2I | ATGCAT | 1 cut(s) | 682 |