Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G27460 |
| fragaria_vesca | FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 |
| malus_domestica | MD00G1136100.v1.1 MD15G1379700.v1.1 |
| prunus_persica | Prupe.1G525900_v2.0.a1 |
| pyrus_communis | pycom15g34030 |
| rosa_chinensis | RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751 |
| rosa_laevigata | RLG00000000970 RLG00000029974 |
| rosa_multiflora | Rmu_ssc0000067.1_g000033 |
| rosa_roxburghii | Rroxscaffold_3G00223780 |
| rosa_rugosa | Rorug01G0070100 Rorug07G0307800 |
| rosa_samantha | Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700 |
| rosa_wichuraiana | Rw0G013090 Rw7G038370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1077 |
| Acc65I | GGTACC | 1 cut(s) | 499 |
| AccB1I | GGYRCC | 1 cut(s) | 499 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 1123, 1279 |
| AccI | GTMKAC | 1 cut(s) | 791 |
| AccIII | TCCGGA | 1 cut(s) | 70 |
| AciI | CCGC | 7 cut(s) | 81, 87, 142, 145, 503, 523, 1062 |
| AclWI | GGATC | 1 cut(s) | 252 |
| AcoI | YGGCCR | 3 cut(s) | 181, 477, 675 |
| AcsI | RAATTY | 2 cut(s) | 858, 1238 |
| AcuI | CTGAAG | 2 cut(s) | 176, 756 |
| AfaI | GTAC | 2 cut(s) | 501, 868 |
| AfeI | AGCGCT | 1 cut(s) | 176 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 42, 1123, 1279 |
| AgsI | TTSAA | 5 cut(s) | 58, 166, 262, 1139, 1226 |
| Alw21I | GWGCWC | 2 cut(s) | 42, 662 |
| Alw26I | GTCTC | 4 cut(s) | 130, 920, 982, 1391 |
| AlwI | GGATC | 1 cut(s) | 252 |
| Aor13HI | TCCGGA | 1 cut(s) | 70 |
| Aor51HI | AGCGCT | 1 cut(s) | 176 |
| AoxI | GGCC | 7 cut(s) | 115, 181, 477, 675, 697, 1184, 1206 |
| ApeKI | GCWGC | 1 cut(s) | 341 |
| ApoI | RAATTY | 2 cut(s) | 858, 1238 |
| Asp718I | GGTACC | 1 cut(s) | 499 |
| AspLEI | GCGC | 2 cut(s) | 177, 487 |
| AspS9I | GGNCC | 1 cut(s) | 196 |
| AsuHPI | GGTGA | 3 cut(s) | 308, 640, 910 |
| AvaII | GGWCC | 1 cut(s) | 196 |
| BalI | TGGCCA | 1 cut(s) | 479 |
| BanI | GGYRCC | 1 cut(s) | 499 |
| BanII | GRGCYC | 2 cut(s) | 42, 443 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1131, 1163 |
| BbsI | GAAGAC | 1 cut(s) | 15 |
| Bbv12I | GWGCWC | 2 cut(s) | 42, 662 |
| BbvCI | CCTCAGC | 1 cut(s) | 396 |
| BbvI | GCAGC | 1 cut(s) | 353 |
| BccI | CCATC | 8 cut(s) | 161, 418, 604, 648, 1009, 1195, 1360, 1381 |
| BceAI | ACGGC | 3 cut(s) | 74, 342, 498 |
| BciVI | GTATCC | 1 cut(s) | 528 |
| BcoDI | GTCTC | 4 cut(s) | 130, 920, 982, 1391 |
| BfaI | CTAG | 3 cut(s) | 837, 905, 992 |
| BfmI | CTRYAG | 1 cut(s) | 30 |
| BfoI | RGCGCY | 1 cut(s) | 178 |
| BfuI | GTATCC | 1 cut(s) | 528 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 719 |
| BisI | GCNGC | 2 cut(s) | 145, 342 |
| BlsI | GCNGC | 2 cut(s) | 146, 343 |
| Bme18I | GGWCC | 1 cut(s) | 196 |
| BmgT120I | GGNCC | 1 cut(s) | 196 |
| BmiI | GGNNCC | 1 cut(s) | 501 |
| BmsI | GCATC | 3 cut(s) | 338, 396, 1237 |
| BpiI | GAAGAC | 1 cut(s) | 15 |
| Bpu10I | CCTNAGC | 2 cut(s) | 41, 396 |
| BpuEI | CTTGAG | 1 cut(s) | 1343 |
| BsaI | GGTCTC | 1 cut(s) | 130 |
| BsaJI | CCNNGG | 2 cut(s) | 90, 480 |
| BsaWI | WCCGGW | 1 cut(s) | 70 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 110, 140, 823, 853 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 42, 1123, 1279 |
| Bse118I | RCCGGY | 2 cut(s) | 238, 677 |
| Bse3DI | GCAATG | 3 cut(s) | 1149, 1167, 1310 |
| BseAI | TCCGGA | 1 cut(s) | 70 |
| BseDI | CCNNGG | 2 cut(s) | 90, 480 |
| BseGI | GGATG | 8 cut(s) | 153, 429, 659, 820, 1020, 1252, 1353, 1396 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 42, 1123, 1279 |
| BseMI | GCAATG | 3 cut(s) | 1149, 1167, 1310 |
| BseMII | CTCAG | 5 cut(s) | 55, 185, 387, 1307, 1349 |
| BseXI | GCAGC | 1 cut(s) | 353 |
| BseYI | CCCAGC | 1 cut(s) | 851 |
| BshFI | GGCC | 7 cut(s) | 117, 183, 479, 677, 699, 1186, 1208 |
| BshNI | GGYRCC | 1 cut(s) | 499 |
| BsiHKAI | GWGCWC | 2 cut(s) | 42, 662 |
| BsiSI | CCGG | 3 cut(s) | 71, 239, 678 |
| BslFI | GGGAC | 1 cut(s) | 395 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 42, 1123, 1279 |
| BsmAI | GTCTC | 4 cut(s) | 130, 920, 982, 1391 |
| BsmBI | CGTCTC | 1 cut(s) | 920 |
| BsmFI | GGGAC | 1 cut(s) | 395 |
| BsmI | GAATGC | 3 cut(s) | 291, 577, 1326 |
| BsnI | GGCC | 7 cut(s) | 117, 183, 479, 677, 699, 1186, 1208 |
| Bso31I | GGTCTC | 1 cut(s) | 130 |
| Bsp1286I | GDGCHC | 3 cut(s) | 42, 443, 662 |
| Bsp13I | TCCGGA | 1 cut(s) | 70 |
| Bsp143I | GATC | 2 cut(s) | 109, 244 |
| BspACI | CCGC | 7 cut(s) | 81, 87, 142, 145, 503, 523, 1062 |
| BspANI | GGCC | 7 cut(s) | 117, 183, 479, 677, 699, 1186, 1208 |
| BspCNI | CTCAG | 5 cut(s) | 54, 184, 388, 1308, 1348 |
| BspEI | TCCGGA | 1 cut(s) | 70 |
| BspLI | GGNNCC | 1 cut(s) | 501 |
| BspPI | GGATC | 1 cut(s) | 252 |
| BspQI | GCTCTTC | 2 cut(s) | 195, 360 |
| BspT107I | GGYRCC | 1 cut(s) | 499 |
| BspTNI | GGTCTC | 1 cut(s) | 130 |
| BsrDI | GCAATG | 3 cut(s) | 1149, 1167, 1310 |
| BsrFI | RCCGGY | 2 cut(s) | 238, 677 |
| BssAI | RCCGGY | 2 cut(s) | 238, 677 |
| BssECI | CCNNGG | 2 cut(s) | 90, 480 |
| BssMI | GATC | 2 cut(s) | 109, 244 |
| BssNAI | GTATAC | 1 cut(s) | 792 |
| Bst1107I | GTATAC | 1 cut(s) | 792 |
| Bst4CI | ACNGT | 4 cut(s) | 258, 789, 888, 1175 |
| Bst6I | CTCTTC | 4 cut(s) | 195, 294, 360, 732 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 701 |
| BstC8I | GCNNGC | 1 cut(s) | 697 |
| BstDEI | CTNAG | 5 cut(s) | 41, 171, 396, 1316, 1335 |
| BstDSI | CCRYGG | 2 cut(s) | 90, 480 |
| BstF5I | GGATG | 8 cut(s) | 153, 429, 659, 820, 1020, 1252, 1353, 1396 |
| BstH2I | RGCGCY | 1 cut(s) | 178 |
| BstHHI | GCGC | 2 cut(s) | 177, 487 |
| BstKTI | GATC | 2 cut(s) | 112, 247 |
| BstMAI | GTCTC | 4 cut(s) | 130, 920, 982, 1391 |
| BstMBI | GATC | 2 cut(s) | 109, 244 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 350, 701, 710, 719, 1139, 1321 |
| BstNSI | RCATGY | 3 cut(s) | 579, 880, 1006 |
| BstSFI | CTRYAG | 1 cut(s) | 30 |
| BstV1I | GCAGC | 1 cut(s) | 353 |
| BstV2I | GAAGAC | 1 cut(s) | 15 |
| BstZ17I | GTATAC | 1 cut(s) | 792 |
| BsuI | GTATCC | 1 cut(s) | 528 |
| BsuRI | GGCC | 7 cut(s) | 117, 183, 479, 677, 699, 1186, 1208 |
| BtgI | CCRYGG | 2 cut(s) | 90, 480 |
| BtsCI | GGATG | 8 cut(s) | 153, 429, 659, 820, 1020, 1252, 1353, 1396 |
| BtsI | GCAGTG | 1 cut(s) | 8 |
| BtsIMutI | CAGTG | 2 cut(s) | 8, 384 |
| Cac8I | GCNNGC | 1 cut(s) | 697 |
| CfoI | GCGC | 2 cut(s) | 177, 487 |
| Cfr10I | RCCGGY | 2 cut(s) | 238, 677 |
| Cfr13I | GGNCC | 1 cut(s) | 196 |
| Csp6I | GTAC | 2 cut(s) | 500, 867 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 72, 107 |
| CviAII | CATG | 7 cut(s) | 248, 362, 576, 877, 1003, 1083, 1123 |
| CviQI | GTAC | 2 cut(s) | 500, 867 |
| DdeI | CTNAG | 5 cut(s) | 41, 171, 396, 1316, 1335 |
| DpnI | GATC | 2 cut(s) | 111, 246 |
| DpnII | GATC | 2 cut(s) | 109, 244 |
| EaeI | YGGCCR | 3 cut(s) | 181, 477, 675 |
| Eam1104I | CTCTTC | 4 cut(s) | 195, 294, 360, 732 |
| EarI | CTCTTC | 4 cut(s) | 195, 294, 360, 732 |
| EciI | GGCGGA | 1 cut(s) | 131 |
| Ecl136II | GAGCTC | 1 cut(s) | 40 |
| Eco147I | AGGCCT | 1 cut(s) | 699 |
| Eco24I | GRGCYC | 2 cut(s) | 42, 443 |
| Eco31I | GGTCTC | 1 cut(s) | 130 |
| Eco47I | GGWCC | 1 cut(s) | 196 |
| Eco47III | AGCGCT | 1 cut(s) | 176 |
| Eco53kI | GAGCTC | 1 cut(s) | 40 |
| Eco57I | CTGAAG | 2 cut(s) | 176, 756 |
| EcoICRI | GAGCTC | 1 cut(s) | 40 |
| EcoO109I | RGGNCCY | 1 cut(s) | 196 |
| EcoRI | GAATTC | 1 cut(s) | 858 |
| EcoT22I | ATGCAT | 2 cut(s) | 577, 882 |
| EcoT38I | GRGCYC | 2 cut(s) | 42, 443 |
| Esp3I | CGTCTC | 1 cut(s) | 920 |
| FaeI | CATG | 7 cut(s) | 251, 365, 579, 880, 1006, 1086, 1126 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 684, 716 |
| FaqI | GGGAC | 1 cut(s) | 395 |
| FatI | CATG | 7 cut(s) | 247, 361, 575, 876, 1002, 1082, 1122 |
| FblI | GTMKAC | 1 cut(s) | 791 |
| Fnu4HI | GCNGC | 2 cut(s) | 145, 342 |
| FokI | GGATG | 8 cut(s) | 140, 436, 666, 827, 1027, 1259, 1340, 1403 |
| FriOI | GRGCYC | 2 cut(s) | 42, 443 |
| Fsp4HI | GCNGC | 2 cut(s) | 145, 342 |
| FspBI | CTAG | 3 cut(s) | 837, 905, 992 |
| GlaI | GCGC | 2 cut(s) | 176, 486 |
| GluI | GCNGC | 2 cut(s) | 145, 342 |
| GsaI | CCCAGC | 1 cut(s) | 855 |
| HaeII | RGCGCY | 1 cut(s) | 178 |
| HaeIII | GGCC | 7 cut(s) | 117, 183, 479, 677, 699, 1186, 1208 |
| HapII | CCGG | 3 cut(s) | 71, 239, 678 |
| HhaI | GCGC | 2 cut(s) | 177, 487 |
| Hin1II | CATG | 7 cut(s) | 251, 365, 579, 880, 1006, 1086, 1126 |
| Hin6I | GCGC | 2 cut(s) | 175, 485 |
| HinP1I | GCGC | 2 cut(s) | 175, 485 |
| HindIII | AAGCTT | 1 cut(s) | 413 |
| HinfI | GANTC | 5 cut(s) | 947, 975, 1031, 1090, 1155 |
| HpaII | CCGG | 3 cut(s) | 71, 239, 678 |
| HphI | GGTGA | 3 cut(s) | 308, 640, 910 |
| Hpy166II | GTNNAC | 3 cut(s) | 669, 792, 1414 |
| Hpy188I | TCNGA | 3 cut(s) | 405, 1192, 1338 |
| Hpy188III | TCNNGA | 6 cut(s) | 43, 71, 98, 163, 333, 1360 |
| Hpy8I | GTNNAC | 3 cut(s) | 669, 792, 1414 |
| Hpy99I | CGWCG | 2 cut(s) | 134, 799 |
| HpyAV | CCTTC | 6 cut(s) | 287, 490, 998, 1094, 1098, 1366 |
| HpyCH4III | ACNGT | 4 cut(s) | 258, 789, 888, 1175 |
| HpyCH4IV | ACGT | 1 cut(s) | 794 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 350, 701, 710, 719, 1139, 1321 |
| HpyF3I | CTNAG | 5 cut(s) | 41, 171, 396, 1316, 1335 |
| HpySE526I | ACGT | 1 cut(s) | 794 |
| Hsp92II | CATG | 7 cut(s) | 251, 365, 579, 880, 1006, 1086, 1126 |
| HspAI | GCGC | 2 cut(s) | 175, 485 |
| Kpn2I | TCCGGA | 1 cut(s) | 70 |
| KpnI | GGTACC | 1 cut(s) | 503 |
| Kzo9I | GATC | 2 cut(s) | 109, 244 |
| LguI | GCTCTTC | 2 cut(s) | 195, 360 |
| LmnI | GCTCC | 3 cut(s) | 45, 73, 657 |
| Lsp1109I | GCAGC | 1 cut(s) | 353 |
| LweI | GCATC | 3 cut(s) | 338, 396, 1237 |
| MaeI | CTAG | 3 cut(s) | 837, 905, 992 |
| MaeII | ACGT | 1 cut(s) | 794 |
| MaeIII | GTNAC | 1 cut(s) | 527 |
| MalI | GATC | 2 cut(s) | 111, 246 |
| MboI | GATC | 2 cut(s) | 109, 244 |
| MboII | GAAGA | 6 cut(s) | 15, 182, 311, 347, 749, 766 |
| MhlI | GDGCHC | 3 cut(s) | 42, 443, 662 |
| MlsI | TGGCCA | 1 cut(s) | 479 |
| MluCI | AATT | 7 cut(s) | 223, 858, 871, 1072, 1238, 1252, 1380 |
| MluNI | TGGCCA | 1 cut(s) | 479 |
| MlyI | GAGTC | 3 cut(s) | 956, 984, 1040 |
| MmeI | TCCRAC | 1 cut(s) | 631 |
| MnlI | CCTC | 9 cut(s) | 391, 453, 788, 805, 1052, 1176, 1237, 1332, 1367 |
| Mox20I | TGGCCA | 1 cut(s) | 479 |
| Mph1103I | ATGCAT | 2 cut(s) | 577, 882 |
| MroI | TCCGGA | 1 cut(s) | 70 |
| MscI | TGGCCA | 1 cut(s) | 479 |
| MseI | TTAA | 2 cut(s) | 542, 1383 |
| MslI | CAYNNNNRTG | 2 cut(s) | 275, 366 |
| Msp20I | TGGCCA | 1 cut(s) | 479 |
| MspI | CCGG | 3 cut(s) | 71, 239, 678 |
| Mva1269I | GAATGC | 3 cut(s) | 291, 577, 1326 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 350, 701, 710, 719, 1139, 1321 |
| NdeII | GATC | 2 cut(s) | 109, 244 |
| NlaIII | CATG | 7 cut(s) | 251, 365, 579, 880, 1006, 1086, 1126 |
| NlaIV | GGNNCC | 1 cut(s) | 501 |
| NmeAIII | GCCGAG | 3 cut(s) | 61, 949, 1054 |
| NsiI | ATGCAT | 2 cut(s) | 577, 882 |
| NspI | RCATGY | 3 cut(s) | 579, 880, 1006 |
| PceI | AGGCCT | 1 cut(s) | 699 |
| PciSI | GCTCTTC | 2 cut(s) | 195, 360 |
| PctI | GAATGC | 3 cut(s) | 291, 577, 1326 |
| PfeI | GAWTC | 2 cut(s) | 1090, 1155 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 1123, 1279 |
| PkrI | GCNGC | 2 cut(s) | 146, 343 |
| PleI | GAGTC | 3 cut(s) | 955, 983, 1039 |
| PpsI | GAGTC | 3 cut(s) | 955, 983, 1039 |
| PpuMI | RGGWCCY | 1 cut(s) | 196 |
| PsiI | TTATAA | 1 cut(s) | 1077 |
| Psp124BI | GAGCTC | 1 cut(s) | 42 |
| Psp5II | RGGWCCY | 1 cut(s) | 196 |
| PspFI | CCCAGC | 1 cut(s) | 851 |
| PspN4I | GGNNCC | 1 cut(s) | 501 |
| PspPI | GGNCC | 1 cut(s) | 196 |
| PspPPI | RGGWCCY | 1 cut(s) | 196 |
| RsaI | GTAC | 2 cut(s) | 501, 868 |
| RsaNI | GTAC | 2 cut(s) | 500, 867 |
| RseI | CAYNNNNRTG | 2 cut(s) | 275, 366 |
| SacI | GAGCTC | 1 cut(s) | 42 |
| SapI | GCTCTTC | 2 cut(s) | 195, 360 |
| SaqAI | TTAA | 2 cut(s) | 542, 1383 |
| SatI | GCNGC | 2 cut(s) | 145, 342 |
| Sau3AI | GATC | 2 cut(s) | 109, 244 |
| Sau96I | GGNCC | 1 cut(s) | 196 |
| SchI | GAGTC | 3 cut(s) | 956, 984, 1040 |
| SduI | GDGCHC | 3 cut(s) | 42, 443, 662 |
| SfaNI | GCATC | 3 cut(s) | 338, 396, 1237 |
| SfcI | CTRYAG | 1 cut(s) | 30 |
| SgrAI | CRCCGGYG | 1 cut(s) | 238 |
| SinI | GGWCC | 1 cut(s) | 196 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 275, 366 |
| SmlI | CTYRAG | 1 cut(s) | 1358 |
| SmoI | CTYRAG | 1 cut(s) | 1358 |
| Sse9I | AATT | 7 cut(s) | 223, 858, 871, 1072, 1238, 1252, 1380 |
| SseBI | AGGCCT | 1 cut(s) | 699 |
| SsiI | CCGC | 7 cut(s) | 81, 87, 142, 145, 503, 523, 1062 |
| SspMI | CTAG | 3 cut(s) | 837, 905, 992 |
| SstI | GAGCTC | 1 cut(s) | 42 |
| StuI | AGGCCT | 1 cut(s) | 699 |
| TaaI | ACNGT | 4 cut(s) | 258, 789, 888, 1175 |
| TaiI | ACGT | 1 cut(s) | 797 |
| TaqI | TCGA | 4 cut(s) | 108, 229, 334, 973 |
| TasI | AATT | 7 cut(s) | 223, 858, 871, 1072, 1238, 1252, 1380 |
| TauI | GCSGC | 1 cut(s) | 147 |
| TfiI | GAWTC | 2 cut(s) | 1090, 1155 |
| Tru1I | TTAA | 2 cut(s) | 542, 1383 |
| Tru9I | TTAA | 2 cut(s) | 542, 1383 |
| TscAI | CASTG | 2 cut(s) | 15, 391 |
| TseI | GCWGC | 1 cut(s) | 341 |
| TspDTI | ATGAA | 3 cut(s) | 479, 584, 704 |
| TspGWI | ACGGA | 3 cut(s) | 9, 118, 940 |
| TspRI | CASTG | 2 cut(s) | 15, 391 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 1123, 1279 |
| VpaK11BI | GGWCC | 1 cut(s) | 196 |
| XapI | RAATTY | 2 cut(s) | 858, 1238 |
| XceI | RCATGY | 3 cut(s) | 579, 880, 1006 |
| XmiI | GTMKAC | 1 cut(s) | 791 |
| XspI | CTAG | 3 cut(s) | 837, 905, 992 |
| Zsp2I | ATGCAT | 2 cut(s) | 577, 882 |