Rw7G038370

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
58443912 .. 58445478
1567 bp
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UTR
Exon/CDS
Intron
Rw7G038370.1

Sequence Viewer

Length: 1437 bp
ATGTCATCACTGCACTCTCCGTCTTCGCCTGTAGCCGAGCTCAGGAGCAAGATTTTCAAGCTCAAAAATCCGGAGCTGTCCGCAACCGCCGTGGTTCAGGATTGGGTCGATCAAGGCCACAAGGTCTCCGTCGCCGAACTCCGCCGCATTTCCATCCAGCTCTTGAAATCTCAGCGCTTCGGCCACGCTCTTCAGGTCCTAAAATGTATGCAAAGTCAAAGCAATTATCGAATGTCGCCGGTGGATCATGTCATACAGTTGAAATCAATCATCAAAGTGAATGGAATGCTGGAAGGTGAAGAGTATTTTGAGCATTTGACTGATACGGCATCTCGAAAAGCAGCTTGTGTTGCTCTTCTGCATGGTTATGTTGTGGAAAGGGACACTGAAAAGGCTGAGGCTCTGATGCAGAAGCTTGGTGGGATGGGGCTGGTAGTGAGCCCTCATTTGTATAATGAGATGATGAAGTTGTATATGGCCACGGCGCAGTTTGGGAAGGTACCGCTTGTTATACAGCAAATGCGGAGTAACAGGATACCTTTAACTGCTCTTTCGTATAATCTTTGTATGAATGCATGTGCAAAGCTATCTGGGGTTGCTTCGGTTGAGATGGTTTATAGAGAAATGGTGAGTGATGAGAATGTTCAGGTTGGATGGAGCACATTGTCCACTTTGGCCGGTATTTATATGAAAGCAGGCCTTGCTGACAAAGCCAGATTGGCTTTGAGAAATGCTGAAGAGAAGCTGTCTAATAGAAATCGTCTTGGTTATTTCTTCCTCATTACACAGTATACGTCGTTAGAGAGTAAAGAGGATGTTCTGCGACTTTGGAGAGCTAGTAAGAGAGTAGCTGGGAGAATTCCAAGTACCAATTACATGCATATACTGTTGTGCTTGGTGAAGCTAGGCGATATTATAGAAGCCGAGACGATTTTTAGGGAATGGGAGTCCGTTTGCTTTAGGTATGATGTTCGAGTCTCCAATGTCCTTCTAGGTGCATACATGCGAAATGGGATGGTGGAAAAAGCCGAGTCATTACATCAGCACACATTGGATAGAGGCGGTTGCCCAAATTATAAGACATGGGAGATTCTTATGGAAGGAAGGCTGAAAAACCAAAACATGGACGAAGCAGTTGAAGCAATGATACAAGGATTCGCAATGTTGCAAGACTGTCATTGGAGGCCATCAGATGATAATGTTATGGCCTTTGCTGATTATTTTGAAAGGCAAGGAAAATTTGAGGATGCAAATTGGTATATAAGAGTAATCCATAACTTGGGTTTTGCAAGTTTGCCATTATACAAATCATTGCTGAGAATGCACCATTCTGCTCAGAGGTCAGCTTCTCACATCCTCAAGATGATGGAGAAGGACAGAATTAAGATGGATGATGAGACTTCTGCTCTTGTCCACGCTCTCAATGTCTGTGTATAA

Protein Analysis

478

Amino Acids

54.4

Weight (kDa)

8.69

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1077
Acc65I GGTACC 1 cut(s) 499
AccB1I GGYRCC 1 cut(s) 499
AccB7I CCANNNNNTGG 2 cut(s) 1123, 1279
AccI GTMKAC 1 cut(s) 791
AccIII TCCGGA 1 cut(s) 70
AciI CCGC 7 cut(s) 81, 87, 142, 145, 503, 523, 1062
AclWI GGATC 1 cut(s) 252
AcoI YGGCCR 3 cut(s) 181, 477, 675
AcsI RAATTY 2 cut(s) 858, 1238
AcuI CTGAAG 2 cut(s) 176, 756
AfaI GTAC 2 cut(s) 501, 868
AfeI AGCGCT 1 cut(s) 176
AfiI CCNNNNNNNGG 3 cut(s) 42, 1123, 1279
AgsI TTSAA 5 cut(s) 58, 166, 262, 1139, 1226
Alw21I GWGCWC 2 cut(s) 42, 662
Alw26I GTCTC 4 cut(s) 130, 920, 982, 1391
AlwI GGATC 1 cut(s) 252
Aor13HI TCCGGA 1 cut(s) 70
Aor51HI AGCGCT 1 cut(s) 176
AoxI GGCC 7 cut(s) 115, 181, 477, 675, 697, 1184, 1206
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 2 cut(s) 858, 1238
Asp718I GGTACC 1 cut(s) 499
AspLEI GCGC 2 cut(s) 177, 487
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 3 cut(s) 308, 640, 910
AvaII GGWCC 1 cut(s) 196
BalI TGGCCA 1 cut(s) 479
BanI GGYRCC 1 cut(s) 499
BanII GRGCYC 2 cut(s) 42, 443
BarI GAAGNNNNNNTAC 2 cut(s) 1131, 1163
BbsI GAAGAC 1 cut(s) 15
Bbv12I GWGCWC 2 cut(s) 42, 662
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 1 cut(s) 353
BccI CCATC 8 cut(s) 161, 418, 604, 648, 1009, 1195, 1360, 1381
BceAI ACGGC 3 cut(s) 74, 342, 498
BciVI GTATCC 1 cut(s) 528
BcoDI GTCTC 4 cut(s) 130, 920, 982, 1391
BfaI CTAG 3 cut(s) 837, 905, 992
BfmI CTRYAG 1 cut(s) 30
BfoI RGCGCY 1 cut(s) 178
BfuI GTATCC 1 cut(s) 528
BglI GCCNNNNNGGC 1 cut(s) 719
BisI GCNGC 2 cut(s) 145, 342
BlsI GCNGC 2 cut(s) 146, 343
Bme18I GGWCC 1 cut(s) 196
BmgT120I GGNCC 1 cut(s) 196
BmiI GGNNCC 1 cut(s) 501
BmsI GCATC 3 cut(s) 338, 396, 1237
BpiI GAAGAC 1 cut(s) 15
Bpu10I CCTNAGC 2 cut(s) 41, 396
BpuEI CTTGAG 1 cut(s) 1343
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 2 cut(s) 90, 480
BsaWI WCCGGW 1 cut(s) 70
BsaXI ACNNNNNCTCC 4 cut(s) 110, 140, 823, 853
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 1123, 1279
Bse118I RCCGGY 2 cut(s) 238, 677
Bse3DI GCAATG 3 cut(s) 1149, 1167, 1310
BseAI TCCGGA 1 cut(s) 70
BseDI CCNNGG 2 cut(s) 90, 480
BseGI GGATG 8 cut(s) 153, 429, 659, 820, 1020, 1252, 1353, 1396
BseLI CCNNNNNNNGG 3 cut(s) 42, 1123, 1279
BseMI GCAATG 3 cut(s) 1149, 1167, 1310
BseMII CTCAG 5 cut(s) 55, 185, 387, 1307, 1349
BseXI GCAGC 1 cut(s) 353
BseYI CCCAGC 1 cut(s) 851
BshFI GGCC 7 cut(s) 117, 183, 479, 677, 699, 1186, 1208
BshNI GGYRCC 1 cut(s) 499
BsiHKAI GWGCWC 2 cut(s) 42, 662
BsiSI CCGG 3 cut(s) 71, 239, 678
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 42, 1123, 1279
BsmAI GTCTC 4 cut(s) 130, 920, 982, 1391
BsmBI CGTCTC 1 cut(s) 920
BsmFI GGGAC 1 cut(s) 395
BsmI GAATGC 3 cut(s) 291, 577, 1326
BsnI GGCC 7 cut(s) 117, 183, 479, 677, 699, 1186, 1208
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 3 cut(s) 42, 443, 662
Bsp13I TCCGGA 1 cut(s) 70
Bsp143I GATC 2 cut(s) 109, 244
BspACI CCGC 7 cut(s) 81, 87, 142, 145, 503, 523, 1062
BspANI GGCC 7 cut(s) 117, 183, 479, 677, 699, 1186, 1208
BspCNI CTCAG 5 cut(s) 54, 184, 388, 1308, 1348
BspEI TCCGGA 1 cut(s) 70
BspLI GGNNCC 1 cut(s) 501
BspPI GGATC 1 cut(s) 252
BspQI GCTCTTC 2 cut(s) 195, 360
BspT107I GGYRCC 1 cut(s) 499
BspTNI GGTCTC 1 cut(s) 130
BsrDI GCAATG 3 cut(s) 1149, 1167, 1310
BsrFI RCCGGY 2 cut(s) 238, 677
BssAI RCCGGY 2 cut(s) 238, 677
BssECI CCNNGG 2 cut(s) 90, 480
BssMI GATC 2 cut(s) 109, 244
BssNAI GTATAC 1 cut(s) 792
Bst1107I GTATAC 1 cut(s) 792
Bst4CI ACNGT 4 cut(s) 258, 789, 888, 1175
Bst6I CTCTTC 4 cut(s) 195, 294, 360, 732
BstAPI GCANNNNNTGC 1 cut(s) 701
BstC8I GCNNGC 1 cut(s) 697
BstDEI CTNAG 5 cut(s) 41, 171, 396, 1316, 1335
BstDSI CCRYGG 2 cut(s) 90, 480
BstF5I GGATG 8 cut(s) 153, 429, 659, 820, 1020, 1252, 1353, 1396
BstH2I RGCGCY 1 cut(s) 178
BstHHI GCGC 2 cut(s) 177, 487
BstKTI GATC 2 cut(s) 112, 247
BstMAI GTCTC 4 cut(s) 130, 920, 982, 1391
BstMBI GATC 2 cut(s) 109, 244
BstMWI GCNNNNNNNGC 6 cut(s) 350, 701, 710, 719, 1139, 1321
BstNSI RCATGY 3 cut(s) 579, 880, 1006
BstSFI CTRYAG 1 cut(s) 30
BstV1I GCAGC 1 cut(s) 353
BstV2I GAAGAC 1 cut(s) 15
BstZ17I GTATAC 1 cut(s) 792
BsuI GTATCC 1 cut(s) 528
BsuRI GGCC 7 cut(s) 117, 183, 479, 677, 699, 1186, 1208
BtgI CCRYGG 2 cut(s) 90, 480
BtsCI GGATG 8 cut(s) 153, 429, 659, 820, 1020, 1252, 1353, 1396
BtsI GCAGTG 1 cut(s) 8
BtsIMutI CAGTG 2 cut(s) 8, 384
Cac8I GCNNGC 1 cut(s) 697
CfoI GCGC 2 cut(s) 177, 487
Cfr10I RCCGGY 2 cut(s) 238, 677
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 500, 867
CspCI CAANNNNNGTGG 2 cut(s) 72, 107
CviAII CATG 7 cut(s) 248, 362, 576, 877, 1003, 1083, 1123
CviQI GTAC 2 cut(s) 500, 867
DdeI CTNAG 5 cut(s) 41, 171, 396, 1316, 1335
DpnI GATC 2 cut(s) 111, 246
DpnII GATC 2 cut(s) 109, 244
EaeI YGGCCR 3 cut(s) 181, 477, 675
Eam1104I CTCTTC 4 cut(s) 195, 294, 360, 732
EarI CTCTTC 4 cut(s) 195, 294, 360, 732
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 40
Eco147I AGGCCT 1 cut(s) 699
Eco24I GRGCYC 2 cut(s) 42, 443
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 196
Eco47III AGCGCT 1 cut(s) 176
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 176, 756
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 1 cut(s) 196
EcoRI GAATTC 1 cut(s) 858
EcoT22I ATGCAT 2 cut(s) 577, 882
EcoT38I GRGCYC 2 cut(s) 42, 443
Esp3I CGTCTC 1 cut(s) 920
FaeI CATG 7 cut(s) 251, 365, 579, 880, 1006, 1086, 1126
FalI AAGNNNNNCTT 2 cut(s) 684, 716
FaqI GGGAC 1 cut(s) 395
FatI CATG 7 cut(s) 247, 361, 575, 876, 1002, 1082, 1122
FblI GTMKAC 1 cut(s) 791
Fnu4HI GCNGC 2 cut(s) 145, 342
FokI GGATG 8 cut(s) 140, 436, 666, 827, 1027, 1259, 1340, 1403
FriOI GRGCYC 2 cut(s) 42, 443
Fsp4HI GCNGC 2 cut(s) 145, 342
FspBI CTAG 3 cut(s) 837, 905, 992
GlaI GCGC 2 cut(s) 176, 486
GluI GCNGC 2 cut(s) 145, 342
GsaI CCCAGC 1 cut(s) 855
HaeII RGCGCY 1 cut(s) 178
HaeIII GGCC 7 cut(s) 117, 183, 479, 677, 699, 1186, 1208
HapII CCGG 3 cut(s) 71, 239, 678
HhaI GCGC 2 cut(s) 177, 487
Hin1II CATG 7 cut(s) 251, 365, 579, 880, 1006, 1086, 1126
Hin6I GCGC 2 cut(s) 175, 485
HinP1I GCGC 2 cut(s) 175, 485
HindIII AAGCTT 1 cut(s) 413
HinfI GANTC 5 cut(s) 947, 975, 1031, 1090, 1155
HpaII CCGG 3 cut(s) 71, 239, 678
HphI GGTGA 3 cut(s) 308, 640, 910
Hpy166II GTNNAC 3 cut(s) 669, 792, 1414
Hpy188I TCNGA 3 cut(s) 405, 1192, 1338
Hpy188III TCNNGA 6 cut(s) 43, 71, 98, 163, 333, 1360
Hpy8I GTNNAC 3 cut(s) 669, 792, 1414
Hpy99I CGWCG 2 cut(s) 134, 799
HpyAV CCTTC 6 cut(s) 287, 490, 998, 1094, 1098, 1366
HpyCH4III ACNGT 4 cut(s) 258, 789, 888, 1175
HpyCH4IV ACGT 1 cut(s) 794
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 701, 710, 719, 1139, 1321
HpyF3I CTNAG 5 cut(s) 41, 171, 396, 1316, 1335
HpySE526I ACGT 1 cut(s) 794
Hsp92II CATG 7 cut(s) 251, 365, 579, 880, 1006, 1086, 1126
HspAI GCGC 2 cut(s) 175, 485
Kpn2I TCCGGA 1 cut(s) 70
KpnI GGTACC 1 cut(s) 503
Kzo9I GATC 2 cut(s) 109, 244
LguI GCTCTTC 2 cut(s) 195, 360
LmnI GCTCC 3 cut(s) 45, 73, 657
Lsp1109I GCAGC 1 cut(s) 353
LweI GCATC 3 cut(s) 338, 396, 1237
MaeI CTAG 3 cut(s) 837, 905, 992
MaeII ACGT 1 cut(s) 794
MaeIII GTNAC 1 cut(s) 527
MalI GATC 2 cut(s) 111, 246
MboI GATC 2 cut(s) 109, 244
MboII GAAGA 6 cut(s) 15, 182, 311, 347, 749, 766
MhlI GDGCHC 3 cut(s) 42, 443, 662
MlsI TGGCCA 1 cut(s) 479
MluCI AATT 7 cut(s) 223, 858, 871, 1072, 1238, 1252, 1380
MluNI TGGCCA 1 cut(s) 479
MlyI GAGTC 3 cut(s) 956, 984, 1040
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 9 cut(s) 391, 453, 788, 805, 1052, 1176, 1237, 1332, 1367
Mox20I TGGCCA 1 cut(s) 479
Mph1103I ATGCAT 2 cut(s) 577, 882
MroI TCCGGA 1 cut(s) 70
MscI TGGCCA 1 cut(s) 479
MseI TTAA 2 cut(s) 542, 1383
MslI CAYNNNNRTG 2 cut(s) 275, 366
Msp20I TGGCCA 1 cut(s) 479
MspI CCGG 3 cut(s) 71, 239, 678
Mva1269I GAATGC 3 cut(s) 291, 577, 1326
MwoI GCNNNNNNNGC 6 cut(s) 350, 701, 710, 719, 1139, 1321
NdeII GATC 2 cut(s) 109, 244
NlaIII CATG 7 cut(s) 251, 365, 579, 880, 1006, 1086, 1126
NlaIV GGNNCC 1 cut(s) 501
NmeAIII GCCGAG 3 cut(s) 61, 949, 1054
NsiI ATGCAT 2 cut(s) 577, 882
NspI RCATGY 3 cut(s) 579, 880, 1006
PceI AGGCCT 1 cut(s) 699
PciSI GCTCTTC 2 cut(s) 195, 360
PctI GAATGC 3 cut(s) 291, 577, 1326
PfeI GAWTC 2 cut(s) 1090, 1155
PflMI CCANNNNNTGG 2 cut(s) 1123, 1279
PkrI GCNGC 2 cut(s) 146, 343
PleI GAGTC 3 cut(s) 955, 983, 1039
PpsI GAGTC 3 cut(s) 955, 983, 1039
PpuMI RGGWCCY 1 cut(s) 196
PsiI TTATAA 1 cut(s) 1077
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 851
PspN4I GGNNCC 1 cut(s) 501
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
RsaI GTAC 2 cut(s) 501, 868
RsaNI GTAC 2 cut(s) 500, 867
RseI CAYNNNNRTG 2 cut(s) 275, 366
SacI GAGCTC 1 cut(s) 42
SapI GCTCTTC 2 cut(s) 195, 360
SaqAI TTAA 2 cut(s) 542, 1383
SatI GCNGC 2 cut(s) 145, 342
Sau3AI GATC 2 cut(s) 109, 244
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 3 cut(s) 956, 984, 1040
SduI GDGCHC 3 cut(s) 42, 443, 662
SfaNI GCATC 3 cut(s) 338, 396, 1237
SfcI CTRYAG 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 238
SinI GGWCC 1 cut(s) 196
SmiMI CAYNNNNRTG 2 cut(s) 275, 366
SmlI CTYRAG 1 cut(s) 1358
SmoI CTYRAG 1 cut(s) 1358
Sse9I AATT 7 cut(s) 223, 858, 871, 1072, 1238, 1252, 1380
SseBI AGGCCT 1 cut(s) 699
SsiI CCGC 7 cut(s) 81, 87, 142, 145, 503, 523, 1062
SspMI CTAG 3 cut(s) 837, 905, 992
SstI GAGCTC 1 cut(s) 42
StuI AGGCCT 1 cut(s) 699
TaaI ACNGT 4 cut(s) 258, 789, 888, 1175
TaiI ACGT 1 cut(s) 797
TaqI TCGA 4 cut(s) 108, 229, 334, 973
TasI AATT 7 cut(s) 223, 858, 871, 1072, 1238, 1252, 1380
TauI GCSGC 1 cut(s) 147
TfiI GAWTC 2 cut(s) 1090, 1155
Tru1I TTAA 2 cut(s) 542, 1383
Tru9I TTAA 2 cut(s) 542, 1383
TscAI CASTG 2 cut(s) 15, 391
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 3 cut(s) 479, 584, 704
TspGWI ACGGA 3 cut(s) 9, 118, 940
TspRI CASTG 2 cut(s) 15, 391
Van91I CCANNNNNTGG 2 cut(s) 1123, 1279
VpaK11BI GGWCC 1 cut(s) 196
XapI RAATTY 2 cut(s) 858, 1238
XceI RCATGY 3 cut(s) 579, 880, 1006
XmiI GTMKAC 1 cut(s) 791
XspI CTAG 3 cut(s) 837, 905, 992
Zsp2I ATGCAT 2 cut(s) 577, 882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.