Rmu_ssc0000067.1_g000033

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000067.1
Physical Location & Seq
Forward (+)
103557 .. 105189
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000067.1_g000033.1.cds

Sequence Viewer

Length: 1503 bp
atggcgagccgttggtccgtcgccggtctgaaacggtgggtcccacattcgggcgcgtggaggcagatgtcatcgctgagctctccgtcttcgcctgtagccgagctcaggagcaagattttcaagctcaaaaatccggagctgtccgcaaccgccgtggttcaggactgggtcgatcaaggccacaaggtctccgtcgccgaactccgccgcatttccatccagctcttgaaatctcagcgcttcggccacgctcttcaggtcctaaaatgcatgcaaactcaaagcaattatcgaatgtcgccggtggatcatgtcatacagttgaaatcaatcatcaaagtaaatggaatgctggaaggtgaagagtattttgagcatttgactgatacggcatctcgaaaagcagcttgtgttgctcttctgcatggttatgttgtcgaaagggacactgaaaaggctgaggctctgatgcagaagcttggtgggatggggctggtagtgagccctcatttgtataatgagatgatgaagttgtatatggccacggcgcagtttgggaaggtaccgcttgttatacagcaaatgcggagtaacaggatacctttaactgctctttcgtataatctttgtatgaatgcatgtgcaaagctatctggggttgcttcggttgagatggtttatagagaaatggtgagtgatgagagtgttcaggttggatggagcacgttgtctactttggctggtatttatatgaaagcaggccttgttgacaaagccagattagctttgagaaatgctgaagagaagctgtctaatagaaatcgccttggttatttcttcctcattacacagtatacgtcgttagagagtaaagaggatgttctgcaactttggagagctagtaagagagtagctgggagaattccaagtactaattacatgcatatattgttgtgcttggtgaagctaggcgatattatagaagccgagaggatttttagggaatgggagtccgtttgctttaggtatgatgttcgagtctccaatgtccttctaggtgcatacatgcggaatgggatggtggaaaaagctgagtcattacatcagcacacattggatagaggcggttgcccaaattataagacatgggagattcttatggaaggaaggctgaaaaaccaaaacatggacgaagcagttgaagcaatgaaacaaggattcgcaatgttgcaagactgtcattggaggccatcagatgataatgttatgacctttgctgattattttgaaaggcaaggaaaatttgaggatgcaaattggtatataagagtaacccataacttgggttttgcaagtttgccattatacaaatcattgctaagaatgcaccattctgctcagaggtcagcttctcacatcctcaagatgatggagaaggacagaattaagatggatgatgagacttctgctcttgtccacgctctcaatgtctgtgtataa

Protein Analysis

500

Amino Acids

56.97

Weight (kDa)

9.08

Isoelectric Point (pI)

45.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
Acc65I GGTACC 1 cut(s) 565
AccB1I GGYRCC 1 cut(s) 565
AccB7I CCANNNNNTGG 2 cut(s) 1189, 1345
AccI GTMKAC 2 cut(s) 734, 857
AccII CGCG 1 cut(s) 56
AccIII TCCGGA 1 cut(s) 136
AciI CCGC 8 cut(s) 147, 153, 208, 211, 569, 589, 1072, 1128
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 2 cut(s) 247, 543
AcsI RAATTY 2 cut(s) 924, 1304
AcuI CTGAAG 2 cut(s) 242, 822
AfaI GTAC 2 cut(s) 567, 934
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 5 cut(s) 49, 50, 108, 1189, 1345
AgsI TTSAA 5 cut(s) 124, 232, 328, 1205, 1292
Alw21I GWGCWC 3 cut(s) 83, 108, 728
Alw26I GTCTC 3 cut(s) 196, 1048, 1457
AlwI GGATC 1 cut(s) 318
Aor13HI TCCGGA 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 5 cut(s) 181, 247, 543, 763, 1250
ApeKI GCWGC 1 cut(s) 407
ApoI RAATTY 2 cut(s) 924, 1304
Asp718I GGTACC 1 cut(s) 565
AspLEI GCGC 3 cut(s) 56, 243, 553
AspS9I GGNCC 3 cut(s) 15, 40, 262
AsuHPI GGTGA 3 cut(s) 374, 706, 976
AvaII GGWCC 3 cut(s) 15, 40, 262
BalI TGGCCA 1 cut(s) 545
BanI GGYRCC 1 cut(s) 565
BanII GRGCYC 3 cut(s) 83, 108, 509
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 3 cut(s) 83, 108, 728
BbvCI CCTCAGC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 419
BccI CCATC 8 cut(s) 227, 484, 670, 714, 1075, 1261, 1426, 1447
BceAI ACGGC 3 cut(s) 140, 408, 564
BciVI GTATCC 1 cut(s) 594
BcoDI GTCTC 3 cut(s) 196, 1048, 1457
BfaI CTAG 3 cut(s) 903, 971, 1058
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 244
BfuI GTATCC 1 cut(s) 594
BisI GCNGC 2 cut(s) 211, 408
BlpI GCTNAGC 1 cut(s) 77
BlsI GCNGC 2 cut(s) 212, 409
BmcAI AGTACT 1 cut(s) 934
Bme18I GGWCC 3 cut(s) 15, 40, 262
BmgT120I GGNCC 3 cut(s) 15, 40, 262
BmiI GGNNCC 3 cut(s) 41, 42, 567
BmrI ACTGGG 1 cut(s) 178
BmsI GCATC 3 cut(s) 404, 462, 1303
BmuI ACTGGG 1 cut(s) 178
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 2 cut(s) 107, 462
Bpu1102I GCTNAGC 1 cut(s) 77
BpuEI CTTGAG 1 cut(s) 1409
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 156, 546, 829
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 889, 919
Bsc4I CCNNNNNNNGG 5 cut(s) 49, 50, 108, 1189, 1345
Bse118I RCCGGY 2 cut(s) 23, 304
Bse1I ACTGG 1 cut(s) 173
Bse3DI GCAATG 3 cut(s) 1215, 1233, 1376
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 156, 546, 829
BseGI GGATG 8 cut(s) 219, 495, 725, 886, 1086, 1318, 1419, 1462
BseLI CCNNNNNNNGG 5 cut(s) 49, 50, 108, 1189, 1345
BseMI GCAATG 3 cut(s) 1215, 1233, 1376
BseMII CTCAG 6 cut(s) 68, 121, 251, 453, 1086, 1415
BseNI ACTGG 1 cut(s) 173
BseXI GCAGC 1 cut(s) 419
BseYI CCCAGC 1 cut(s) 917
Bsh1236I CGCG 1 cut(s) 56
BshFI GGCC 5 cut(s) 183, 249, 545, 765, 1252
BshNI GGYRCC 1 cut(s) 565
BsiHKAI GWGCWC 3 cut(s) 83, 108, 728
BsiSI CCGG 3 cut(s) 24, 137, 305
BslFI GGGAC 2 cut(s) 26, 461
BslI CCNNNNNNNGG 5 cut(s) 49, 50, 108, 1189, 1345
BsmAI GTCTC 3 cut(s) 196, 1048, 1457
BsmFI GGGAC 2 cut(s) 26, 461
BsmI GAATGC 3 cut(s) 357, 643, 1392
BsnI GGCC 5 cut(s) 183, 249, 545, 765, 1252
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 4 cut(s) 83, 108, 509, 728
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 175, 310
Bsp1720I GCTNAGC 1 cut(s) 77
BspACI CCGC 8 cut(s) 147, 153, 208, 211, 569, 589, 1072, 1128
BspANI GGCC 5 cut(s) 183, 249, 545, 765, 1252
BspCNI CTCAG 6 cut(s) 69, 120, 250, 454, 1087, 1414
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 1 cut(s) 56
BspLI GGNNCC 3 cut(s) 41, 42, 567
BspPI GGATC 1 cut(s) 318
BspQI GCTCTTC 2 cut(s) 261, 426
BspT107I GGYRCC 1 cut(s) 565
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 3 cut(s) 1215, 1233, 1376
BsrFI RCCGGY 2 cut(s) 23, 304
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 2 cut(s) 23, 304
BssECI CCNNGG 3 cut(s) 156, 546, 829
BssMI GATC 2 cut(s) 175, 310
BssNAI GTATAC 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 829
Bst1107I GTATAC 1 cut(s) 858
Bst4CI ACNGT 4 cut(s) 36, 324, 855, 1241
Bst6I CTCTTC 4 cut(s) 261, 360, 426, 798
BstC8I GCNNGC 3 cut(s) 7, 275, 763
BstDEI CTNAG 7 cut(s) 77, 107, 237, 462, 1095, 1382, 1401
BstDSI CCRYGG 2 cut(s) 156, 546
BstF5I GGATG 8 cut(s) 219, 495, 725, 886, 1086, 1318, 1419, 1462
BstFNI CGCG 1 cut(s) 56
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 3 cut(s) 56, 243, 553
BstKTI GATC 2 cut(s) 178, 313
BstMAI GTCTC 3 cut(s) 196, 1048, 1457
BstMBI GATC 2 cut(s) 175, 310
BstMWI GCNNNNNNNGC 4 cut(s) 416, 785, 1205, 1387
BstNSI RCATGY 4 cut(s) 277, 645, 946, 1072
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 419
BstV2I GAAGAC 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 858
BsuI GTATCC 1 cut(s) 594
BsuRI GGCC 5 cut(s) 183, 249, 545, 765, 1252
BtgI CCRYGG 2 cut(s) 156, 546
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 8 cut(s) 219, 495, 725, 886, 1086, 1318, 1419, 1462
BtsIMutI CAGTG 1 cut(s) 450
Cac8I GCNNGC 3 cut(s) 7, 275, 763
CfoI GCGC 3 cut(s) 56, 243, 553
Cfr10I RCCGGY 2 cut(s) 23, 304
Cfr13I GGNCC 3 cut(s) 15, 40, 262
Csp6I GTAC 2 cut(s) 566, 933
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 8 cut(s) 274, 314, 428, 642, 943, 1069, 1149, 1189
CviQI GTAC 2 cut(s) 566, 933
DdeI CTNAG 7 cut(s) 77, 107, 237, 462, 1095, 1382, 1401
DpnI GATC 2 cut(s) 177, 312
DpnII GATC 2 cut(s) 175, 310
EaeI YGGCCR 2 cut(s) 247, 543
Eam1104I CTCTTC 4 cut(s) 261, 360, 426, 798
EarI CTCTTC 4 cut(s) 261, 360, 426, 798
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 2 cut(s) 81, 106
Eco130I CCWWGG 1 cut(s) 829
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 3 cut(s) 83, 108, 509
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 3 cut(s) 15, 40, 262
Eco47III AGCGCT 1 cut(s) 242
Eco53kI GAGCTC 2 cut(s) 81, 106
Eco57I CTGAAG 2 cut(s) 242, 822
EcoICRI GAGCTC 2 cut(s) 81, 106
EcoO109I RGGNCCY 2 cut(s) 40, 262
EcoRI GAATTC 1 cut(s) 924
EcoT14I CCWWGG 1 cut(s) 829
EcoT22I ATGCAT 3 cut(s) 275, 643, 948
EcoT38I GRGCYC 3 cut(s) 83, 108, 509
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 8 cut(s) 277, 317, 431, 645, 946, 1072, 1152, 1192
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 26, 461
FatI CATG 8 cut(s) 273, 313, 427, 641, 942, 1068, 1148, 1188
FblI GTMKAC 2 cut(s) 734, 857
Fnu4HI GCNGC 2 cut(s) 211, 408
FokI GGATG 8 cut(s) 206, 502, 732, 893, 1093, 1325, 1406, 1469
FriOI GRGCYC 3 cut(s) 83, 108, 509
Fsp4HI GCNGC 2 cut(s) 211, 408
FspBI CTAG 3 cut(s) 903, 971, 1058
GlaI GCGC 3 cut(s) 55, 242, 552
GluI GCNGC 2 cut(s) 211, 408
GsaI CCCAGC 1 cut(s) 921
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 5 cut(s) 183, 249, 545, 765, 1252
HapII CCGG 3 cut(s) 24, 137, 305
HhaI GCGC 3 cut(s) 56, 243, 553
Hin1II CATG 8 cut(s) 277, 317, 431, 645, 946, 1072, 1152, 1192
Hin6I GCGC 3 cut(s) 54, 241, 551
HinP1I GCGC 3 cut(s) 54, 241, 551
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 5 cut(s) 1013, 1041, 1097, 1156, 1221
HpaII CCGG 3 cut(s) 24, 137, 305
HphI GGTGA 3 cut(s) 374, 706, 976
Hpy166II GTNNAC 4 cut(s) 735, 772, 858, 1480
Hpy188I TCNGA 4 cut(s) 30, 471, 1258, 1404
Hpy188III TCNNGA 6 cut(s) 109, 137, 164, 229, 399, 1426
Hpy8I GTNNAC 4 cut(s) 735, 772, 858, 1480
Hpy99I CGWCG 3 cut(s) 23, 200, 865
HpyAV CCTTC 6 cut(s) 353, 556, 1064, 1160, 1164, 1432
HpyCH4III ACNGT 4 cut(s) 36, 324, 855, 1241
HpyCH4IV ACGT 2 cut(s) 728, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 785, 1205, 1387
HpyF3I CTNAG 7 cut(s) 77, 107, 237, 462, 1095, 1382, 1401
HpySE526I ACGT 2 cut(s) 728, 860
Hsp92II CATG 8 cut(s) 277, 317, 431, 645, 946, 1072, 1152, 1192
HspAI GCGC 3 cut(s) 54, 241, 551
KflI GGGWCCC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 136
KpnI GGTACC 1 cut(s) 569
Kzo9I GATC 2 cut(s) 175, 310
LguI GCTCTTC 2 cut(s) 261, 426
LmnI GCTCC 3 cut(s) 111, 139, 723
Lsp1109I GCAGC 1 cut(s) 419
LweI GCATC 3 cut(s) 404, 462, 1303
MaeI CTAG 3 cut(s) 903, 971, 1058
MaeII ACGT 2 cut(s) 728, 860
MaeIII GTNAC 2 cut(s) 593, 1333
MalI GATC 2 cut(s) 177, 312
MboI GATC 2 cut(s) 175, 310
MboII GAAGA 6 cut(s) 81, 248, 377, 413, 815, 832
MhlI GDGCHC 4 cut(s) 83, 108, 509, 728
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 7 cut(s) 289, 924, 937, 1138, 1304, 1318, 1446
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 3 cut(s) 1022, 1050, 1106
MmeI TCCRAC 1 cut(s) 697
Mox20I TGGCCA 1 cut(s) 545
Mph1103I ATGCAT 3 cut(s) 275, 643, 948
MroI TCCGGA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 545
MseI TTAA 2 cut(s) 608, 1449
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 3 cut(s) 24, 137, 305
Mva1269I GAATGC 3 cut(s) 357, 643, 1392
MvnI CGCG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 416, 785, 1205, 1387
NdeII GATC 2 cut(s) 175, 310
NlaIII CATG 8 cut(s) 277, 317, 431, 645, 946, 1072, 1152, 1192
NlaIV GGNNCC 3 cut(s) 41, 42, 567
NmeAIII GCCGAG 2 cut(s) 127, 1015
NsiI ATGCAT 3 cut(s) 275, 643, 948
NspI RCATGY 4 cut(s) 277, 645, 946, 1072
PaeI GCATGC 1 cut(s) 277
PceI AGGCCT 1 cut(s) 765
PciSI GCTCTTC 2 cut(s) 261, 426
PctI GAATGC 3 cut(s) 357, 643, 1392
PfeI GAWTC 2 cut(s) 1156, 1221
PflFI GACNNNGTC 1 cut(s) 170
PflMI CCANNNNNTGG 2 cut(s) 1189, 1345
PkrI GCNGC 2 cut(s) 212, 409
PleI GAGTC 3 cut(s) 1021, 1049, 1105
PpsI GAGTC 3 cut(s) 1021, 1049, 1105
PpuMI RGGWCCY 2 cut(s) 40, 262
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 2 cut(s) 83, 108
Psp5II RGGWCCY 2 cut(s) 40, 262
PspFI CCCAGC 1 cut(s) 917
PspN4I GGNNCC 3 cut(s) 41, 42, 567
PspPI GGNCC 3 cut(s) 15, 40, 262
PspPPI RGGWCCY 2 cut(s) 40, 262
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 2 cut(s) 567, 934
RsaNI GTAC 2 cut(s) 566, 933
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 2 cut(s) 83, 108
SapI GCTCTTC 2 cut(s) 261, 426
SaqAI TTAA 2 cut(s) 608, 1449
SatI GCNGC 2 cut(s) 211, 408
Sau3AI GATC 2 cut(s) 175, 310
Sau96I GGNCC 3 cut(s) 15, 40, 262
ScaI AGTACT 1 cut(s) 934
SchI GAGTC 3 cut(s) 1022, 1050, 1106
SduI GDGCHC 4 cut(s) 83, 108, 509, 728
SfaNI GCATC 3 cut(s) 404, 462, 1303
SfcI CTRYAG 1 cut(s) 96
SgrAI CRCCGGYG 1 cut(s) 304
SinI GGWCC 3 cut(s) 15, 40, 262
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 1 cut(s) 1424
SmoI CTYRAG 1 cut(s) 1424
SphI GCATGC 1 cut(s) 277
Sse9I AATT 7 cut(s) 289, 924, 937, 1138, 1304, 1318, 1446
SseBI AGGCCT 1 cut(s) 765
SsiI CCGC 8 cut(s) 147, 153, 208, 211, 569, 589, 1072, 1128
SspMI CTAG 3 cut(s) 903, 971, 1058
SstI GAGCTC 2 cut(s) 83, 108
StuI AGGCCT 1 cut(s) 765
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 4 cut(s) 36, 324, 855, 1241
TaiI ACGT 2 cut(s) 731, 863
TaqI TCGA 5 cut(s) 174, 295, 400, 441, 1039
TasI AATT 7 cut(s) 289, 924, 937, 1138, 1304, 1318, 1446
TatI WGTACW 1 cut(s) 932
TauI GCSGC 1 cut(s) 213
TfiI GAWTC 2 cut(s) 1156, 1221
Tru1I TTAA 2 cut(s) 608, 1449
Tru9I TTAA 2 cut(s) 608, 1449
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 407
TspDTI ATGAA 4 cut(s) 545, 650, 770, 1226
TspGWI ACGGA 4 cut(s) 7, 75, 184, 1006
TspRI CASTG 1 cut(s) 457
Tth111I GACNNNGTC 1 cut(s) 170
Van91I CCANNNNNTGG 2 cut(s) 1189, 1345
VpaK11BI GGWCC 3 cut(s) 15, 40, 262
XapI RAATTY 2 cut(s) 924, 1304
XceI RCATGY 4 cut(s) 277, 645, 946, 1072
XmiI GTMKAC 2 cut(s) 734, 857
XspI CTAG 3 cut(s) 903, 971, 1058
ZrmI AGTACT 1 cut(s) 934
Zsp2I ATGCAT 3 cut(s) 275, 643, 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.