Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005310

Physical Location & Seq

Genomic Coordinates Forward (+)

29536808 .. 29537946

Gene Structure 1139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1136100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCTTGGCCGTGTGCTCGTCGCCGGCCTGAGATGGGACGACGAGCTTCAGAGCAAGATTTTGGGGCTGAGAAAACCGGTTTGGAGCGCGACCACCGTGATTCAGAATTGGTGGTCGACGGAGGTCGCAAGGTCTGCGTTTTCGAACTCCGCGGCGTCTCCGTTCAGCTCTTGAAGTCTAAACGCTTCGGCCACGCTCTCAAGGTGCTAACATGGATGGAAACCCAAAACGATTTTCGAACGTTGCCAGGTGATCATGCAATGAGGTTGCAGTCGACCATAAATGTGAATGGTATGTTGGAAGCTGAAGAGTATTTTGAGCAACTTAGCACTGCTTCAAAAAAAGCTGCTTGTCTCCCTCTTCTTTGTGGTTATGTTGTGGAGAGGGACACAGAGAAAGCTGAGGCACTAATGCTGAAGCTTGGCGGGTTGGGGCTCATTGTGAACCCTAACCCGTATAATGAGATGATGAACCTGTATATGTCCACATCTGAATTTGGGAATGTGCCCCTTGTTGTACAGCAGATGAAGAAAAACAAGATCCCCTTAACTGTTTTATCCTATAACCTTTGGATGAATGCGAATGCCAAGCTATCCGGGTTTGGTTTGGTGGAGATGGTTTATAAAGAAATGTTGAATGATAAGAATGTTGAGGTTGGATGGAGAACTTTGTCTACTTTAGCTTGGCGAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

232

Amino Acids

26.18

Weight (kDa)

8.62

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27460
fragaria_vesca	FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010
malus_domestica	MD00G1136100.v1.1 MD15G1379700.v1.1
prunus_persica	Prupe.1G525900_v2.0.a1
pyrus_communis	pycom15g34030
rosa_chinensis	RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751
rosa_laevigata	RLG00000000970 RLG00000029974
rosa_multiflora	Rmu_ssc0000067.1_g000033
rosa_roxburghii	Rroxscaffold_3G00223780
rosa_rugosa	Rorug01G0070100 Rorug07G0307800
rosa_samantha	Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700
rosa_wichuraiana	Rw0G013090 Rw7G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	624
AccI	GTMKAC	3 cut(s)	117, 275, 674
AccII	CGCG	2 cut(s)	90, 153
AciI	CCGC	3 cut(s)	151, 153, 426
AclI	AACGTT	1 cut(s)	242
AclWI	GGATC	1 cut(s)	535
AcoI	YGGCCR	2 cut(s)	8, 190
AcsI	RAATTY	1 cut(s)	494
AcuI	CTGAAG	3 cut(s)	33, 327, 437
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	1 cut(s)	519
AfiI	CCNNNNNNNGG	1 cut(s)	35
AgeI	ACCGGT	1 cut(s)	77
AgsI	TTSAA	3 cut(s)	175, 339, 637
AjnI	CCWGG	1 cut(s)	247
AjuI	GAANNNNNNNTTGG	6 cut(s)	65, 97, 219, 251, 281, 313
AluBI	AGCT	8 cut(s)	47, 169, 305, 347, 401, 421, 592, 683
AluI	AGCT	8 cut(s)	47, 169, 305, 347, 401, 421, 592, 683
Alw21I	GWGCWC	1 cut(s)	19
Alw26I	GTCTC	2 cut(s)	163, 359
AlwI	GGATC	1 cut(s)	535
AoxI	GGCC	3 cut(s)	8, 26, 190
ApeKI	GCWGC	1 cut(s)	347
ApoI	RAATTY	1 cut(s)	494
AsiGI	ACCGGT	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	263
AsuII	TTCGAA	2 cut(s)	144, 238
BaeGI	GKGCMC	1 cut(s)	510
BanII	GRGCYC	1 cut(s)	438
Bbv12I	GWGCWC	1 cut(s)	19
BbvCI	CCTCAGC	1 cut(s)	402
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	4 cut(s)	28, 211, 610, 654
BciT130I	CCWGG	1 cut(s)	249
BclI	TGATCA	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	598
BcoDI	GTCTC	2 cut(s)	163, 359
BisI	GCNGC	2 cut(s)	154, 348
BlsI	GCNGC	2 cut(s)	155, 349
Bme1390I	CCNGG	2 cut(s)	249, 598
BmrFI	CCNGG	2 cut(s)	249, 598
BoxI	GACNNNNGTC	1 cut(s)	123
Bpu10I	CCTNAGC	1 cut(s)	402
Bpu14I	TTCGAA	2 cut(s)	144, 238
BpuEI	CTTGAG	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	598
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	1 cut(s)	151
BsaWI	WCCGGW	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	35
Bse118I	RCCGGY	2 cut(s)	24, 77
Bse3DI	GCAATG	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	249
BseDI	CCNNGG	1 cut(s)	151
BseGI	GGATG	3 cut(s)	222, 579, 665
BseLI	CCNNNNNNNGG	1 cut(s)	35
BseMI	GCAATG	1 cut(s)	267
BseMII	CTCAG	3 cut(s)	21, 60, 393
BseSI	GKGCMC	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	2 cut(s)	90, 153
BshFI	GGCC	3 cut(s)	10, 28, 192
BshTI	ACCGGT	1 cut(s)	77
BsiHKAI	GWGCWC	1 cut(s)	19
BsiSI	CCGG	3 cut(s)	25, 78, 597
BslFI	GGGAC	2 cut(s)	51, 401
BslI	CCNNNNNNNGG	1 cut(s)	35
BsmAI	GTCTC	2 cut(s)	163, 359
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	2 cut(s)	51, 401
BsmI	GAATGC	2 cut(s)	583, 589
BsnI	GGCC	3 cut(s)	10, 28, 192
Bsp119I	TTCGAA	2 cut(s)	144, 238
Bsp1286I	GDGCHC	3 cut(s)	19, 438, 510
Bsp1407I	TGTACA	1 cut(s)	517
Bsp143I	GATC	2 cut(s)	253, 540
BspACI	CCGC	3 cut(s)	151, 153, 426
BspANI	GGCC	3 cut(s)	10, 28, 192
BspCNI	CTCAG	3 cut(s)	22, 61, 394
BspFNI	CGCG	2 cut(s)	90, 153
BspPI	GGATC	1 cut(s)	535
BspT104I	TTCGAA	2 cut(s)	144, 238
BsrDI	GCAATG	1 cut(s)	267
BsrFI	RCCGGY	2 cut(s)	24, 77
BsrGI	TGTACA	1 cut(s)	517
BssAI	RCCGGY	2 cut(s)	24, 77
BssECI	CCNNGG	1 cut(s)	151
BssMI	GATC	2 cut(s)	253, 540
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	249
Bst4CI	ACNGT	2 cut(s)	98, 553
Bst6I	CTCTTC	2 cut(s)	303, 366
BstACI	GRCGYC	1 cut(s)	156
BstAPI	GCANNNNNTGC	1 cut(s)	135
BstAUI	TGTACA	1 cut(s)	517
BstBI	TTCGAA	2 cut(s)	144, 238
BstC8I	GCNNGC	1 cut(s)	26
BstDEI	CTNAG	4 cut(s)	30, 69, 326, 402
BstDSI	CCRYGG	1 cut(s)	151
BstF5I	GGATG	3 cut(s)	222, 579, 665
BstFNI	CGCG	2 cut(s)	90, 153
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	2 cut(s)	256, 543
BstMAI	GTCTC	2 cut(s)	163, 359
BstMBI	GATC	2 cut(s)	253, 540
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstNI	CCWGG	1 cut(s)	249
BstPAI	GACNNNNGTC	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	247, 596
BstSLI	GKGCMC	1 cut(s)	510
BstUI	CGCG	2 cut(s)	90, 153
BstV1I	GCAGC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	540
BstYI	RGATCY	1 cut(s)	540
BsuRI	GGCC	3 cut(s)	10, 28, 192
BtgI	CCRYGG	1 cut(s)	151
BtsCI	GGATG	3 cut(s)	222, 579, 665
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	26
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	2 cut(s)	24, 77
Cfr42I	CCGCGG	1 cut(s)	154
CseI	GACGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	518
CspAI	ACCGGT	1 cut(s)	77
CviAII	CATG	2 cut(s)	213, 257
CviQI	GTAC	1 cut(s)	518
DdeI	CTNAG	4 cut(s)	30, 69, 326, 402
DpnI	GATC	2 cut(s)	255, 542
DpnII	GATC	2 cut(s)	253, 540
EaeI	YGGCCR	2 cut(s)	8, 190
Eam1104I	CTCTTC	2 cut(s)	303, 366
EarI	CTCTTC	2 cut(s)	303, 366
Eco24I	GRGCYC	1 cut(s)	438
Eco57I	CTGAAG	3 cut(s)	33, 327, 437
EcoRII	CCWGG	1 cut(s)	247
EcoT38I	GRGCYC	1 cut(s)	438
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	2 cut(s)	216, 260
FalI	AAGNNNNNCTT	2 cut(s)	530, 562
FaqI	GGGAC	2 cut(s)	51, 401
FatI	CATG	2 cut(s)	212, 256
FauI	CCCGC	1 cut(s)	419
FbaI	TGATCA	1 cut(s)	253
FblI	GTMKAC	3 cut(s)	117, 275, 674
Fnu4HI	GCNGC	2 cut(s)	154, 348
FokI	GGATG	3 cut(s)	229, 586, 672
FriOI	GRGCYC	1 cut(s)	438
Fsp4HI	GCNGC	2 cut(s)	154, 348
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	2 cut(s)	154, 348
HaeIII	GGCC	3 cut(s)	10, 28, 192
HapII	CCGG	3 cut(s)	25, 78, 597
HgaI	GACGC	1 cut(s)	145
HhaI	GCGC	1 cut(s)	90
Hin1I	GRCGYC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	216, 260
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	2 cut(s)	118, 276
HindII	GTYRAC	2 cut(s)	118, 276
HindIII	AAGCTT	1 cut(s)	419
HinfI	GANTC	1 cut(s)	101
HpaII	CCGG	3 cut(s)	25, 78, 597
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	5 cut(s)	118, 276, 445, 486, 675
Hpy188I	TCNGA	3 cut(s)	52, 106, 493
Hpy188III	TCNNGA	1 cut(s)	172
Hpy8I	GTNNAC	5 cut(s)	118, 276, 445, 486, 675
Hpy99I	CGWCG	3 cut(s)	24, 45, 122
HpyCH4III	ACNGT	2 cut(s)	98, 553
HpyCH4IV	ACGT	1 cut(s)	242
HpyCH4V	TGCA	2 cut(s)	260, 271
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
HpyF3I	CTNAG	4 cut(s)	30, 69, 326, 402
HpySE526I	ACGT	1 cut(s)	242
Hsp92I	GRCGYC	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	216, 260
HspAI	GCGC	1 cut(s)	88
KroI	GCCGGC	1 cut(s)	24
KroNI	GCCGGC	1 cut(s)	26
Ksp22I	TGATCA	1 cut(s)	253
KspI	CCGCGG	1 cut(s)	154
Kzo9I	GATC	2 cut(s)	253, 540
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	7 cut(s)	38, 42, 91, 234, 261, 488, 610
Lsp1109I	GCAGC	1 cut(s)	334
MaeII	ACGT	1 cut(s)	242
MalI	GATC	2 cut(s)	255, 542
MboI	GATC	2 cut(s)	253, 540
MboII	GAAGA	3 cut(s)	320, 353, 541
MflI	RGATCY	1 cut(s)	540
MhlI	GDGCHC	3 cut(s)	19, 438, 510
MluCI	AATT	2 cut(s)	107, 494
MmeI	TCCRAC	2 cut(s)	279, 637
MnlI	CCTC	6 cut(s)	116, 258, 369, 378, 397, 646
MroNI	GCCGGC	1 cut(s)	24
MseI	TTAA	1 cut(s)	548
MslI	CAYNNNNRTG	1 cut(s)	284
MspA1I	CMGCKG	1 cut(s)	153
MspI	CCGG	3 cut(s)	25, 78, 597
MspR9I	CCNGG	2 cut(s)	249, 598
Mva1269I	GAATGC	2 cut(s)	583, 589
MvaI	CCWGG	1 cut(s)	249
MvnI	CGCG	2 cut(s)	90, 153
MwoI	GCNNNNNNNGC	1 cut(s)	135
NaeI	GCCGGC	1 cut(s)	26
NciI	CCSGG	1 cut(s)	598
NdeII	GATC	2 cut(s)	253, 540
NgoMIV	GCCGGC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	216, 260
NspV	TTCGAA	2 cut(s)	144, 238
PctI	GAATGC	2 cut(s)	583, 589
PdiI	GCCGGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	101
PinAI	ACCGGT	1 cut(s)	77
PkrI	GCNGC	2 cut(s)	155, 349
PshAI	GACNNNNGTC	1 cut(s)	123
PsiI	TTATAA	1 cut(s)	624
Psp1406I	AACGTT	1 cut(s)	242
Psp6I	CCWGG	1 cut(s)	247
PspGI	CCWGG	1 cut(s)	247
PsrI	GAACNNNNNNTAC	2 cut(s)	658, 690
PsuI	RGATCY	1 cut(s)	540
RsaI	GTAC	1 cut(s)	519
RsaNI	GTAC	1 cut(s)	518
RseI	CAYNNNNRTG	1 cut(s)	284
SacII	CCGCGG	1 cut(s)	154
SalI	GTCGAC	2 cut(s)	116, 274
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	2 cut(s)	154, 348
Sau3AI	GATC	2 cut(s)	253, 540
ScrFI	CCNGG	2 cut(s)	249, 598
SduI	GDGCHC	3 cut(s)	19, 438, 510
Sfr303I	CCGCGG	1 cut(s)	154
SfuI	TTCGAA	2 cut(s)	144, 238
SgrBI	CCGCGG	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	284
SmlI	CTYRAG	1 cut(s)	200
SmoI	CTYRAG	1 cut(s)	200
Sse9I	AATT	2 cut(s)	107, 494
SsiI	CCGC	3 cut(s)	151, 153, 426
StyD4I	CCNGG	2 cut(s)	247, 596
TaaI	ACNGT	2 cut(s)	98, 553
TaiI	ACGT	1 cut(s)	245
TaqI	TCGA	4 cut(s)	117, 144, 238, 275
TasI	AATT	2 cut(s)	107, 494
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	156
TfiI	GAWTC	1 cut(s)	101
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	337
TseI	GCWGC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	485, 542, 590
TspGWI	ACGGA	2 cut(s)	135, 151
TspRI	CASTG	1 cut(s)	337
XapI	RAATTY	1 cut(s)	494
XmiI	GTMKAC	3 cut(s)	117, 275, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.