Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0005310

Physical Location & Seq

Genomic Coordinates Forward (+)

17522225 .. 17524680

Gene Structure 2456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG084100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGGGCTGGTAGTGAGCCCTCATTTGTATAATGAGATGATGAAGTTGTATACGGCCACGGCGCAGTTTGGGAAGGTACCGCTTGTTATAAAGCAAATGCGGAGTAACAAGATACCTCTGACTGGTCTTTCGTATAATCTTTGTATGAATGCGTGTGCAGAGCTATCTGGGGTTGCTTCGGTTGAGATGGTTTATAGAGAAATGGTGAGTGATGAGAATGTTCAGGTTGGATGGAGCACGTTGTCTACTTTGGCTGGTATTTATATGAAAGCAGGCCTTATTGACAAAGCCAAGTTGGCCTTAAGAAATGCTGAAGAGAAGCTGTCTAATAGAAATCGCCTTGGTTATTTCTTCCTCATTGCACTGTGTGATATTATAGAAGCCGAGGGGATTTTTAGGGAATGGGAGTCAGTTTGCTTTAGGTATGATGTTCGAGTCTCCAGTGTCCTTCTAGGTGCATACATGCGGAATGGGATGGTCGAAAAAGCCGAGTCATTACATCAGCACACATTGGATAGAGGCGGTTGCCCAAATTATAAGACATGGGAGATTCTTATGGAAGGAAGGCTGAAAAACCAAAACATGGATGAAGCAGATGAAGCAATGAAACAAGGATTTGCAATGTTGCAAGACTGTCATTGGAGGCCATCAGATGATACTGTTATGGCCTTTGCTGATTATTTGAAAGGCAAGGAAAATTTGAGGATGCAAATTGGAATGCACCATTCTGCTCAGAGGCCAGCTTCTCACATCCTCAAGATGATGGAGAAGGACAGAATTAAGATGGATGATGAGACTTCTGCTCTTGTCCCCGCTCTCAATTCAAAATGTTTAACGGGAGGAACTTTCGCAGTCAATCTTGATGTTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

290

Amino Acids

32.71

Weight (kDa)

6.4

Isoelectric Point (pI)

35.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27460
fragaria_vesca	FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010
malus_domestica	MD00G1136100.v1.1 MD15G1379700.v1.1
prunus_persica	Prupe.1G525900_v2.0.a1
pyrus_communis	pycom15g34030
rosa_chinensis	RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751
rosa_laevigata	RLG00000000970 RLG00000029974
rosa_multiflora	Rmu_ssc0000067.1_g000033
rosa_roxburghii	Rroxscaffold_3G00223780
rosa_rugosa	Rorug01G0070100 Rorug07G0307800
rosa_samantha	Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700
rosa_wichuraiana	Rw0G013090 Rw7G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	89, 537
Acc65I	GGTACC	1 cut(s)	76
AccB1I	GGYRCC	1 cut(s)	76
AccB7I	CCANNNNNTGG	1 cut(s)	583
AccBSI	CCGCTC	1 cut(s)	815
AccI	GTMKAC	2 cut(s)	50, 245
AciI	CCGC	5 cut(s)	80, 100, 466, 522, 813
AcoI	YGGCCR	1 cut(s)	54
AcsI	RAATTY	1 cut(s)	697
AcuI	CTGAAG	1 cut(s)	333
AdeI	CACNNNGTG	1 cut(s)	368
AfaI	GTAC	1 cut(s)	78
AfiI	CCNNNNNNNGG	2 cut(s)	122, 583
AflII	CTTAAG	1 cut(s)	301
AgsI	TTSAA	2 cut(s)	685, 825
AluBI	AGCT	3 cut(s)	163, 322, 743
AluI	AGCT	3 cut(s)	163, 322, 743
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	2 cut(s)	442, 788
AoxI	GGCC	6 cut(s)	54, 274, 297, 644, 666, 737
ApoI	RAATTY	1 cut(s)	697
ArsI	GACNNNNNNTTYG	2 cut(s)	112, 144
Asp718I	GGTACC	1 cut(s)	76
AspLEI	GCGC	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	217
BanI	GGYRCC	1 cut(s)	76
BanII	GRGCYC	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	239
BccI	CCATC	6 cut(s)	181, 225, 469, 655, 757, 778
BceAI	ACGGC	2 cut(s)	69, 75
BcoDI	GTCTC	2 cut(s)	442, 788
BfaI	CTAG	1 cut(s)	452
BfrI	CTTAAG	1 cut(s)	301
BglI	GCCNNNNNGGC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	78
BmsI	GCATC	1 cut(s)	696
BpmI	CTGGAG	1 cut(s)	424
BpuEI	CTTGAG	1 cut(s)	740
BsaJI	CCNNGG	3 cut(s)	57, 340, 384
Bsc4I	CCNNNNNNNGG	2 cut(s)	122, 583
Bse1I	ACTGG	2 cut(s)	127, 441
Bse3DI	GCAATG	3 cut(s)	357, 609, 627
BseDI	CCNNGG	3 cut(s)	57, 340, 384
BseGI	GGATG	6 cut(s)	236, 480, 592, 711, 750, 793
BseLI	CCNNNNNNNGG	2 cut(s)	122, 583
BseMI	GCAATG	3 cut(s)	357, 609, 627
BseMII	CTCAG	1 cut(s)	746
BseNI	ACTGG	2 cut(s)	127, 441
BsgI	GTGCAG	1 cut(s)	177
BshFI	GGCC	6 cut(s)	56, 276, 299, 646, 668, 739
BshNI	GGYRCC	1 cut(s)	76
BsiHKAI	GWGCWC	1 cut(s)	239
BslFI	GGGAC	1 cut(s)	794
BslI	CCNNNNNNNGG	2 cut(s)	122, 583
BsmAI	GTCTC	2 cut(s)	442, 788
BsmFI	GGGAC	1 cut(s)	794
BsmI	GAATGC	2 cut(s)	154, 723
BsnI	GGCC	6 cut(s)	56, 276, 299, 646, 668, 739
Bsp1286I	GDGCHC	2 cut(s)	20, 239
BspACI	CCGC	5 cut(s)	80, 100, 466, 522, 813
BspANI	GGCC	6 cut(s)	56, 276, 299, 646, 668, 739
BspCNI	CTCAG	1 cut(s)	745
BspLI	GGNNCC	1 cut(s)	78
BspT107I	GGYRCC	1 cut(s)	76
BspTI	CTTAAG	1 cut(s)	301
BsrBI	CCGCTC	1 cut(s)	815
BsrDI	GCAATG	3 cut(s)	357, 609, 627
BsrI	ACTGG	2 cut(s)	127, 441
BssECI	CCNNGG	3 cut(s)	57, 340, 384
BssNAI	GTATAC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	340
Bst1107I	GTATAC	1 cut(s)	51
Bst4CI	ACNGT	3 cut(s)	366, 635, 661
Bst6I	CTCTTC	1 cut(s)	309
BstAFI	CTTAAG	1 cut(s)	301
BstC8I	GCNNGC	2 cut(s)	274, 741
BstDEI	CTNAG	1 cut(s)	732
BstDSI	CCRYGG	1 cut(s)	57
BstF5I	GGATG	6 cut(s)	236, 480, 592, 711, 750, 793
BstHHI	GCGC	1 cut(s)	64
BstMAI	GTCTC	2 cut(s)	442, 788
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 599
BstNSI	RCATGY	1 cut(s)	466
BstZ17I	GTATAC	1 cut(s)	51
BsuRI	GGCC	6 cut(s)	56, 276, 299, 646, 668, 739
BtgI	CCRYGG	1 cut(s)	57
BtsCI	GGATG	6 cut(s)	236, 480, 592, 711, 750, 793
BtsIMutI	CAGTG	2 cut(s)	362, 448
Cac8I	GCNNGC	2 cut(s)	274, 741
CfoI	GCGC	1 cut(s)	64
Csp6I	GTAC	1 cut(s)	77
CviAII	CATG	3 cut(s)	463, 543, 583
CviQI	GTAC	1 cut(s)	77
DdeI	CTNAG	1 cut(s)	732
DraIII	CACNNNGTG	1 cut(s)	368
EaeI	YGGCCR	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	309
EarI	CTCTTC	1 cut(s)	309
Eco130I	CCWWGG	1 cut(s)	340
Eco147I	AGGCCT	1 cut(s)	276
Eco24I	GRGCYC	1 cut(s)	20
Eco57I	CTGAAG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	340
EcoT38I	GRGCYC	1 cut(s)	20
ErhI	CCWWGG	1 cut(s)	340
FaeI	CATG	3 cut(s)	466, 546, 586
FalI	AAGNNNNNCTT	4 cut(s)	261, 293, 284, 316
FaqI	GGGAC	1 cut(s)	794
FatI	CATG	3 cut(s)	462, 542, 582
FauI	CCCGC	1 cut(s)	820
FblI	GTMKAC	2 cut(s)	50, 245
FokI	GGATG	6 cut(s)	243, 487, 599, 718, 737, 800
FriOI	GRGCYC	1 cut(s)	20
FspBI	CTAG	1 cut(s)	452
GlaI	GCGC	1 cut(s)	63
GsuI	CTGGAG	1 cut(s)	424
HaeIII	GGCC	6 cut(s)	56, 276, 299, 646, 668, 739
HhaI	GCGC	1 cut(s)	64
Hin1II	CATG	3 cut(s)	466, 546, 586
Hin6I	GCGC	1 cut(s)	62
HinP1I	GCGC	1 cut(s)	62
HincII	GTYRAC	1 cut(s)	868
HindII	GTYRAC	1 cut(s)	868
HinfI	GANTC	4 cut(s)	407, 435, 491, 550
HpaI	GTTAAC	1 cut(s)	868
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	3 cut(s)	51, 246, 868
Hpy188I	TCNGA	3 cut(s)	120, 652, 735
Hpy188III	TCNNGA	2 cut(s)	757, 860
Hpy8I	GTNNAC	3 cut(s)	51, 246, 868
HpyAV	CCTTC	5 cut(s)	67, 458, 554, 558, 763
HpyCH4III	ACNGT	3 cut(s)	366, 635, 661
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	7 cut(s)	158, 362, 458, 620, 628, 709, 721
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 599
HpyF3I	CTNAG	1 cut(s)	732
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	3 cut(s)	466, 546, 586
HspAI	GCGC	1 cut(s)	62
KpnI	GGTACC	1 cut(s)	80
KspAI	GTTAAC	1 cut(s)	868
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	7 cut(s)	108, 153, 209, 240, 258, 454, 753
LweI	GCATC	1 cut(s)	696
MaeI	CTAG	1 cut(s)	452
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	1 cut(s)	104
MbiI	CCGCTC	1 cut(s)	815
MboII	GAAGA	2 cut(s)	326, 343
MhlI	GDGCHC	2 cut(s)	20, 239
MluCI	AATT	5 cut(s)	532, 697, 711, 777, 820
MlyI	GAGTC	3 cut(s)	416, 444, 500
MmeI	TCCRAC	1 cut(s)	208
MseI	TTAA	4 cut(s)	302, 780, 833, 867
MspCI	CTTAAG	1 cut(s)	301
Mva1269I	GAATGC	2 cut(s)	154, 723
MwoI	GCNNNNNNNGC	2 cut(s)	296, 599
NlaIII	CATG	3 cut(s)	466, 546, 586
NlaIV	GGNNCC	1 cut(s)	78
NmeAIII	GCCGAG	2 cut(s)	409, 514
NspI	RCATGY	1 cut(s)	466
PceI	AGGCCT	1 cut(s)	276
PcsI	WCGNNNNNNNCGW	1 cut(s)	486
PctI	GAATGC	2 cut(s)	154, 723
PfeI	GAWTC	1 cut(s)	550
PflMI	CCANNNNNTGG	1 cut(s)	583
PleI	GAGTC	3 cut(s)	415, 443, 499
PpsI	GAGTC	3 cut(s)	415, 443, 499
PsiI	TTATAA	2 cut(s)	89, 537
PspN4I	GGNNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	78
RsaNI	GTAC	1 cut(s)	77
SaqAI	TTAA	4 cut(s)	302, 780, 833, 867
SchI	GAGTC	3 cut(s)	416, 444, 500
SduI	GDGCHC	2 cut(s)	20, 239
SetI	ASST	9 cut(s)	78, 118, 165, 228, 242, 324, 425, 457, 745
SfaNI	GCATC	1 cut(s)	696
SmlI	CTYRAG	2 cut(s)	301, 755
SmoI	CTYRAG	2 cut(s)	301, 755
Sse9I	AATT	5 cut(s)	532, 697, 711, 777, 820
SseBI	AGGCCT	1 cut(s)	276
SsiI	CCGC	5 cut(s)	80, 100, 466, 522, 813
SspMI	CTAG	1 cut(s)	452
StuI	AGGCCT	1 cut(s)	276
StyI	CCWWGG	1 cut(s)	340
TaaI	ACNGT	3 cut(s)	366, 635, 661
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	2 cut(s)	433, 480
TasI	AATT	5 cut(s)	532, 697, 711, 777, 820
TfiI	GAWTC	1 cut(s)	550
Tru1I	TTAA	4 cut(s)	302, 780, 833, 867
Tru9I	TTAA	4 cut(s)	302, 780, 833, 867
TscAI	CASTG	2 cut(s)	369, 448
TspDTI	ATGAA	6 cut(s)	56, 161, 281, 603, 612, 620
TspRI	CASTG	2 cut(s)	369, 448
Van91I	CCANNNNNTGG	1 cut(s)	583
Vha464I	CTTAAG	1 cut(s)	301
XapI	RAATTY	1 cut(s)	697
XceI	RCATGY	1 cut(s)	466
XmiI	GTMKAC	2 cut(s)	50, 245
XspI	CTAG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.