RLG00000000970

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
8686900 .. 8688532
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000970

Sequence Viewer

Length: 1503 bp
ATGGCGAGCCGTTGGTCCGTCGCCGGTCTGAAACGGTGGGTCCCATATTCGGACGCATGGAGGCAGATGTCATCACTGAGCTCTTCGTCTTCGCCTGTAGCCAAGCTCAAGAGCAAGATTTTCAAGCTCAAAAATCCGGACCTGTCCGCAACCGCCGTGGTTCAGGATTGGGTCGATCAAGGCCACAAGGTCTCCGTCGCCGAACTCCGCCGCATTTCCATCCAGCTCTTGAAATCTCAGCGCTTCGGCCACGCTCTTCAGGTCCTAAAATGTATGCAAACTCAAAGCAATTATCGAATGTCGCCGGTGGATCACGTCATACAGTTGAAATCAATCATCAAAGTAACTGGAATGTTGGAAGGTGAAGAGTATTTTAAGCATTTGACTGATGCCGCGTCGCGAAAAGCGGCTTGTGTTGCCCTTCTACATGGTTATGTTGTGGAAAGGGACACAGAAAAGGCTGAGGCTCTGATGCAGAAGCTTGGTGGGTTGGGGCTGGTTGTGAGCCCTCATTTGTATAATGAGATGATGAAGTTGTATATGGCCACGGCGCAGTTTGGGAAGGTACCGCTTGTTATACAGCAAATGCGGAGTAACAGGGTACCTTTAACTGCTCTTTCGTATAATCTTTGTATGAATGCGTGTGCAAAGCTATCTGGGGTTGCTTCGGTTGAGATGGTTTATAGAGAAATGGTGAGTGATGAGAATGTTCAGGTTGGATGGAGCACATTGTCTACTTTGGCCGGTATTTATATGAAAGCAGGCCTTGTTGACAAAGCCAGATTGGCTTTGAGAAATGCTGAAGAGAAGCTGTCTAATAGAAATCGCCTTGGTTATTTCTTCCTCATTACACAGTATACATCGTTAGAGAGTAAAGAGGATGTTCTGCGACTTTGGAGAGCTAGTAAGAGAGTAGCTGGAAGAATTCCAAGTACCAATTACATGCATATATTGTTGTGCTTGGTGAAGCTAGGCAATATTATAGAAGCCGAGAGGATTTTTAGGGAATGGGAGTCCGTTTGCTTTAGGTATGATGTTCGAGTCTCCAATGTCCTTCTAGGTGCATACATGCGGAATGGGATGGTGGAAAAAGCCGAGTCATTACATCAGCATACATTGGATAGAGGCGGTTGCCCAAATTATAAGACATGGGAGATTCTTATGGAAGGAAGGCTGAAAAACCAAAACATGGACGAAGCAGTTGAAGCAATGAAACAAGGATTCACAATGTTGCAAGACTGTCATTGGAGGCCATCAAATGATAATGTTATGGCCTTTGCTGATTATTTTGAAAGGCAAGGAAAATTTGAGGATGCAAATTGGTATATAAGAGTAATCCATAACTTGGGTTTTGCAAGTTTGCCATTATACAAATCATTGCTAAGAATGCACCATTCTGCTCAGAGGTCAGCTTCTCACATTCTCAAGATGATGGAGAAGGACAGAATTAAGATGGATGATGAGACTTCTGCTCTTGTCCACACTCTCAATGTCTCTGTATAA

Protein Analysis

501

Amino Acids

57.01

Weight (kDa)

9.4

Isoelectric Point (pI)

44.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1143
Acc65I GGTACC 2 cut(s) 565, 601
AccB1I GGYRCC 2 cut(s) 565, 601
AccB7I CCANNNNNTGG 2 cut(s) 1189, 1345
AccI GTMKAC 2 cut(s) 734, 857
AccII CGCG 2 cut(s) 395, 400
AccIII TCCGGA 1 cut(s) 136
AclWI GGATC 1 cut(s) 318
AcoI YGGCCR 3 cut(s) 247, 543, 741
AcsI RAATTY 2 cut(s) 924, 1304
AcuI CTGAAG 2 cut(s) 242, 822
AfaI GTAC 3 cut(s) 567, 603, 934
AfeI AGCGCT 1 cut(s) 242
AfiI CCNNNNNNNGG 3 cut(s) 49, 1189, 1345
AgsI TTSAA 5 cut(s) 124, 232, 328, 1205, 1292
AjiI CACGTC 1 cut(s) 316
Alw21I GWGCWC 2 cut(s) 83, 728
Alw26I GTCTC 4 cut(s) 196, 1048, 1457, 1498
AlwI GGATC 1 cut(s) 318
Aor13HI TCCGGA 1 cut(s) 136
Aor51HI AGCGCT 1 cut(s) 242
AoxI GGCC 7 cut(s) 181, 247, 543, 741, 763, 1250, 1272
ApoI RAATTY 2 cut(s) 924, 1304
Asp718I GGTACC 2 cut(s) 565, 601
AspLEI GCGC 2 cut(s) 243, 553
AspS9I GGNCC 4 cut(s) 15, 40, 139, 262
AsuHPI GGTGA 3 cut(s) 374, 706, 976
AvaII GGWCC 4 cut(s) 15, 40, 139, 262
BalI TGGCCA 1 cut(s) 545
BanI GGYRCC 2 cut(s) 565, 601
BanII GRGCYC 2 cut(s) 83, 509
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 2 cut(s) 83, 728
BbvCI CCTCAGC 1 cut(s) 462
BccI CCATC 7 cut(s) 227, 670, 714, 1075, 1261, 1426, 1447
BceAI ACGGC 2 cut(s) 140, 564
BcoDI GTCTC 4 cut(s) 196, 1048, 1457, 1498
BfaI CTAG 3 cut(s) 903, 971, 1058
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 244
BglI GCCNNNNNGGC 1 cut(s) 785
BisI GCNGC 3 cut(s) 211, 393, 408
BlsI GCNGC 3 cut(s) 212, 394, 409
Bme18I GGWCC 4 cut(s) 15, 40, 139, 262
BmgBI CACGTC 1 cut(s) 316
BmgT120I GGNCC 4 cut(s) 15, 40, 139, 262
BmiI GGNNCC 4 cut(s) 41, 42, 567, 603
BmsI GCATC 3 cut(s) 379, 462, 1303
BpiI GAAGAC 1 cut(s) 81
Bpu10I CCTNAGC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 92, 1409
BsaI GGTCTC 1 cut(s) 196
BsaJI CCNNGG 3 cut(s) 156, 546, 829
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 4 cut(s) 176, 206, 889, 919
Bsc4I CCNNNNNNNGG 3 cut(s) 49, 1189, 1345
Bse118I RCCGGY 3 cut(s) 23, 304, 743
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 2 cut(s) 1215, 1376
BseAI TCCGGA 1 cut(s) 136
BseDI CCNNGG 3 cut(s) 156, 546, 829
BseGI GGATG 6 cut(s) 219, 725, 886, 1086, 1318, 1462
BseLI CCNNNNNNNGG 3 cut(s) 49, 1189, 1345
BseMI GCAATG 2 cut(s) 1215, 1376
BseMII CTCAG 4 cut(s) 68, 251, 453, 1415
BseNI ACTGG 1 cut(s) 352
Bsh1236I CGCG 2 cut(s) 395, 400
BshFI GGCC 7 cut(s) 183, 249, 545, 743, 765, 1252, 1274
BshNI GGYRCC 2 cut(s) 565, 601
BsiHKAI GWGCWC 2 cut(s) 83, 728
BsiSI CCGG 4 cut(s) 24, 137, 305, 744
BslFI GGGAC 2 cut(s) 26, 461
BslI CCNNNNNNNGG 3 cut(s) 49, 1189, 1345
BsmAI GTCTC 4 cut(s) 196, 1048, 1457, 1498
BsmFI GGGAC 2 cut(s) 26, 461
BsmI GAATGC 2 cut(s) 643, 1392
BsnI GGCC 7 cut(s) 183, 249, 545, 743, 765, 1252, 1274
Bso31I GGTCTC 1 cut(s) 196
Bsp1286I GDGCHC 3 cut(s) 83, 509, 728
Bsp13I TCCGGA 1 cut(s) 136
Bsp143I GATC 2 cut(s) 175, 310
Bsp68I TCGCGA 1 cut(s) 400
BspANI GGCC 7 cut(s) 183, 249, 545, 743, 765, 1252, 1274
BspCNI CTCAG 4 cut(s) 69, 250, 454, 1414
BspEI TCCGGA 1 cut(s) 136
BspFNI CGCG 2 cut(s) 395, 400
BspLI GGNNCC 4 cut(s) 41, 42, 567, 603
BspPI GGATC 1 cut(s) 318
BspQI GCTCTTC 2 cut(s) 88, 261
BspT107I GGYRCC 2 cut(s) 565, 601
BspTNI GGTCTC 1 cut(s) 196
BsrDI GCAATG 2 cut(s) 1215, 1376
BsrFI RCCGGY 3 cut(s) 23, 304, 743
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 3 cut(s) 23, 304, 743
BssECI CCNNGG 3 cut(s) 156, 546, 829
BssMI GATC 2 cut(s) 175, 310
BssNAI GTATAC 1 cut(s) 858
BssT1I CCWWGG 1 cut(s) 829
Bst1107I GTATAC 1 cut(s) 858
Bst4CI ACNGT 4 cut(s) 36, 324, 855, 1241
Bst6I CTCTTC 4 cut(s) 88, 261, 360, 798
BstC8I GCNNGC 2 cut(s) 7, 763
BstDEI CTNAG 5 cut(s) 77, 237, 462, 1382, 1401
BstDSI CCRYGG 2 cut(s) 156, 546
BstF5I GGATG 6 cut(s) 219, 725, 886, 1086, 1318, 1462
BstFNI CGCG 2 cut(s) 395, 400
BstH2I RGCGCY 1 cut(s) 244
BstHHI GCGC 2 cut(s) 243, 553
BstKTI GATC 2 cut(s) 178, 313
BstMAI GTCTC 4 cut(s) 196, 1048, 1457, 1498
BstMBI GATC 2 cut(s) 175, 310
BstMWI GCNNNNNNNGC 4 cut(s) 416, 785, 1205, 1387
BstNSI RCATGY 2 cut(s) 946, 1072
BstSFI CTRYAG 1 cut(s) 96
BstUI CGCG 2 cut(s) 395, 400
BstV2I GAAGAC 1 cut(s) 81
BstZ17I GTATAC 1 cut(s) 858
BsuRI GGCC 7 cut(s) 183, 249, 545, 743, 765, 1252, 1274
BtgI CCRYGG 2 cut(s) 156, 546
BtrI CACGTC 1 cut(s) 316
BtsCI GGATG 6 cut(s) 219, 725, 886, 1086, 1318, 1462
BtsIMutI CAGTG 1 cut(s) 74
BtuMI TCGCGA 1 cut(s) 400
Cac8I GCNNGC 2 cut(s) 7, 763
CfoI GCGC 2 cut(s) 243, 553
Cfr10I RCCGGY 3 cut(s) 23, 304, 743
Cfr13I GGNCC 4 cut(s) 15, 40, 139, 262
CseI GACGC 2 cut(s) 62, 384
Csp6I GTAC 3 cut(s) 566, 602, 933
CspCI CAANNNNNGTGG 2 cut(s) 138, 173
CviAII CATG 6 cut(s) 57, 428, 943, 1069, 1149, 1189
CviQI GTAC 3 cut(s) 566, 602, 933
DdeI CTNAG 5 cut(s) 77, 237, 462, 1382, 1401
DpnI GATC 2 cut(s) 177, 312
DpnII GATC 2 cut(s) 175, 310
EaeI YGGCCR 3 cut(s) 247, 543, 741
Eam1104I CTCTTC 4 cut(s) 88, 261, 360, 798
EarI CTCTTC 4 cut(s) 88, 261, 360, 798
EciI GGCGGA 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 829
Eco147I AGGCCT 1 cut(s) 765
Eco24I GRGCYC 2 cut(s) 83, 509
Eco31I GGTCTC 1 cut(s) 196
Eco47I GGWCC 4 cut(s) 15, 40, 139, 262
Eco47III AGCGCT 1 cut(s) 242
Eco53kI GAGCTC 1 cut(s) 81
Eco57I CTGAAG 2 cut(s) 242, 822
EcoICRI GAGCTC 1 cut(s) 81
EcoO109I RGGNCCY 2 cut(s) 40, 262
EcoRI GAATTC 1 cut(s) 924
EcoT14I CCWWGG 1 cut(s) 829
EcoT22I ATGCAT 1 cut(s) 948
EcoT38I GRGCYC 2 cut(s) 83, 509
ErhI CCWWGG 1 cut(s) 829
FaeI CATG 6 cut(s) 60, 431, 946, 1072, 1152, 1192
FalI AAGNNNNNCTT 2 cut(s) 750, 782
FaqI GGGAC 2 cut(s) 26, 461
FatI CATG 6 cut(s) 56, 427, 942, 1068, 1148, 1188
FblI GTMKAC 2 cut(s) 734, 857
Fnu4HI GCNGC 3 cut(s) 211, 393, 408
FokI GGATG 6 cut(s) 206, 732, 893, 1093, 1325, 1469
FriOI GRGCYC 2 cut(s) 83, 509
Fsp4HI GCNGC 3 cut(s) 211, 393, 408
FspBI CTAG 3 cut(s) 903, 971, 1058
GlaI GCGC 2 cut(s) 242, 552
GluI GCNGC 3 cut(s) 211, 393, 408
HaeII RGCGCY 1 cut(s) 244
HaeIII GGCC 7 cut(s) 183, 249, 545, 743, 765, 1252, 1274
HapII CCGG 4 cut(s) 24, 137, 305, 744
HgaI GACGC 2 cut(s) 62, 384
HhaI GCGC 2 cut(s) 243, 553
Hin1II CATG 6 cut(s) 60, 431, 946, 1072, 1152, 1192
Hin6I GCGC 2 cut(s) 241, 551
HinP1I GCGC 2 cut(s) 241, 551
HincII GTYRAC 1 cut(s) 772
HindII GTYRAC 1 cut(s) 772
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 5 cut(s) 1013, 1041, 1097, 1156, 1221
HpaII CCGG 4 cut(s) 24, 137, 305, 744
HphI GGTGA 3 cut(s) 374, 706, 976
Hpy166II GTNNAC 4 cut(s) 735, 772, 858, 1480
Hpy188I TCNGA 4 cut(s) 30, 52, 471, 1404
Hpy188III TCNNGA 6 cut(s) 109, 137, 164, 229, 399, 1426
Hpy8I GTNNAC 4 cut(s) 735, 772, 858, 1480
Hpy99I CGWCG 3 cut(s) 23, 200, 400
HpyAV CCTTC 7 cut(s) 353, 431, 556, 1064, 1160, 1164, 1432
HpyCH4III ACNGT 4 cut(s) 36, 324, 855, 1241
HpyCH4IV ACGT 1 cut(s) 315
HpyCH4V TGCA 9 cut(s) 277, 475, 647, 946, 1064, 1234, 1316, 1355, 1390
HpyF10VI GCNNNNNNNGC 4 cut(s) 416, 785, 1205, 1387
HpyF3I CTNAG 5 cut(s) 77, 237, 462, 1382, 1401
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 6 cut(s) 60, 431, 946, 1072, 1152, 1192
HspAI GCGC 2 cut(s) 241, 551
KflI GGGWCCC 1 cut(s) 40
Kpn2I TCCGGA 1 cut(s) 136
KpnI GGTACC 2 cut(s) 569, 605
Kzo9I GATC 2 cut(s) 175, 310
LguI GCTCTTC 2 cut(s) 88, 261
LmnI GCTCC 1 cut(s) 723
LweI GCATC 3 cut(s) 379, 462, 1303
MaeI CTAG 3 cut(s) 903, 971, 1058
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 343, 593
MalI GATC 2 cut(s) 177, 312
MboI GATC 2 cut(s) 175, 310
MboII GAAGA 7 cut(s) 75, 81, 248, 377, 815, 832, 933
MhlI GDGCHC 3 cut(s) 83, 509, 728
MlsI TGGCCA 1 cut(s) 545
MluCI AATT 7 cut(s) 289, 924, 937, 1138, 1304, 1318, 1446
MluNI TGGCCA 1 cut(s) 545
MlyI GAGTC 3 cut(s) 1022, 1050, 1106
MmeI TCCRAC 2 cut(s) 336, 697
Mox20I TGGCCA 1 cut(s) 545
Mph1103I ATGCAT 1 cut(s) 948
MroI TCCGGA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 545
MseI TTAA 3 cut(s) 375, 608, 1449
MslI CAYNNNNRTG 1 cut(s) 432
Msp20I TGGCCA 1 cut(s) 545
MspI CCGG 4 cut(s) 24, 137, 305, 744
Mva1269I GAATGC 2 cut(s) 643, 1392
MvnI CGCG 2 cut(s) 395, 400
MwoI GCNNNNNNNGC 4 cut(s) 416, 785, 1205, 1387
NdeII GATC 2 cut(s) 175, 310
NlaIII CATG 6 cut(s) 60, 431, 946, 1072, 1152, 1192
NlaIV GGNNCC 4 cut(s) 41, 42, 567, 603
NmeAIII GCCGAG 2 cut(s) 1015, 1120
NruI TCGCGA 1 cut(s) 400
NsiI ATGCAT 1 cut(s) 948
NspI RCATGY 2 cut(s) 946, 1072
PceI AGGCCT 1 cut(s) 765
PciSI GCTCTTC 2 cut(s) 88, 261
PctI GAATGC 2 cut(s) 643, 1392
PfeI GAWTC 2 cut(s) 1156, 1221
PflMI CCANNNNNTGG 2 cut(s) 1189, 1345
PkrI GCNGC 3 cut(s) 212, 394, 409
PleI GAGTC 3 cut(s) 1021, 1049, 1105
PpsI GAGTC 3 cut(s) 1021, 1049, 1105
PpuMI RGGWCCY 2 cut(s) 40, 262
PsiI TTATAA 1 cut(s) 1143
Psp124BI GAGCTC 1 cut(s) 83
Psp5II RGGWCCY 2 cut(s) 40, 262
PspN4I GGNNCC 4 cut(s) 41, 42, 567, 603
PspPI GGNCC 4 cut(s) 15, 40, 139, 262
PspPPI RGGWCCY 2 cut(s) 40, 262
RruI TCGCGA 1 cut(s) 400
RsaI GTAC 3 cut(s) 567, 603, 934
RsaNI GTAC 3 cut(s) 566, 602, 933
RseI CAYNNNNRTG 1 cut(s) 432
SacI GAGCTC 1 cut(s) 83
SapI GCTCTTC 2 cut(s) 88, 261
SaqAI TTAA 3 cut(s) 375, 608, 1449
SatI GCNGC 3 cut(s) 211, 393, 408
Sau3AI GATC 2 cut(s) 175, 310
Sau96I GGNCC 4 cut(s) 15, 40, 139, 262
SchI GAGTC 3 cut(s) 1022, 1050, 1106
SduI GDGCHC 3 cut(s) 83, 509, 728
SfaNI GCATC 3 cut(s) 379, 462, 1303
SfcI CTRYAG 1 cut(s) 96
SgrAI CRCCGGYG 1 cut(s) 304
SinI GGWCC 4 cut(s) 15, 40, 139, 262
SmiMI CAYNNNNRTG 1 cut(s) 432
SmlI CTYRAG 2 cut(s) 107, 1424
SmoI CTYRAG 2 cut(s) 107, 1424
Sse9I AATT 7 cut(s) 289, 924, 937, 1138, 1304, 1318, 1446
SseBI AGGCCT 1 cut(s) 765
SspI AATATT 1 cut(s) 979
SspMI CTAG 3 cut(s) 903, 971, 1058
SstI GAGCTC 1 cut(s) 83
StuI AGGCCT 1 cut(s) 765
StyI CCWWGG 1 cut(s) 829
TaaI ACNGT 4 cut(s) 36, 324, 855, 1241
TaiI ACGT 1 cut(s) 318
TaqI TCGA 3 cut(s) 174, 295, 1039
TasI AATT 7 cut(s) 289, 924, 937, 1138, 1304, 1318, 1446
TauI GCSGC 3 cut(s) 213, 395, 410
TfiI GAWTC 2 cut(s) 1156, 1221
Tru1I TTAA 3 cut(s) 375, 608, 1449
Tru9I TTAA 3 cut(s) 375, 608, 1449
TscAI CASTG 1 cut(s) 81
TspDTI ATGAA 4 cut(s) 545, 650, 770, 1226
TspGWI ACGGA 3 cut(s) 7, 184, 1006
TspRI CASTG 1 cut(s) 81
Van91I CCANNNNNTGG 2 cut(s) 1189, 1345
VpaK11BI GGWCC 4 cut(s) 15, 40, 139, 262
XapI RAATTY 2 cut(s) 924, 1304
XceI RCATGY 2 cut(s) 946, 1072
XmiI GTMKAC 2 cut(s) 734, 857
XspI CTAG 3 cut(s) 903, 971, 1058
Zsp2I ATGCAT 1 cut(s) 948
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.