Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G27460 |
| fragaria_vesca | FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 |
| malus_domestica | MD00G1136100.v1.1 MD15G1379700.v1.1 |
| prunus_persica | Prupe.1G525900_v2.0.a1 |
| pyrus_communis | pycom15g34030 |
| rosa_chinensis | RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751 |
| rosa_laevigata | RLG00000000970 RLG00000029974 |
| rosa_multiflora | Rmu_ssc0000067.1_g000033 |
| rosa_roxburghii | Rroxscaffold_3G00223780 |
| rosa_rugosa | Rorug01G0070100 Rorug07G0307800 |
| rosa_samantha | Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700 |
| rosa_wichuraiana | Rw0G013090 Rw7G038370 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 98 |
| AciI | CCGC | 1 cut(s) | 96 |
| AclWI | GGATC | 1 cut(s) | 229 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 43, 184 |
| AgsI | TTSAA | 2 cut(s) | 154, 229 |
| AjnI | CCWGG | 1 cut(s) | 202 |
| AluBI | AGCT | 1 cut(s) | 26 |
| AluI | AGCT | 1 cut(s) | 26 |
| Alw21I | GWGCWC | 1 cut(s) | 274 |
| Alw26I | GTCTC | 1 cut(s) | 71 |
| AlwI | GGATC | 1 cut(s) | 229 |
| AoxI | GGCC | 2 cut(s) | 20, 175 |
| AspS9I | GGNCC | 1 cut(s) | 175 |
| Bbv12I | GWGCWC | 1 cut(s) | 274 |
| BccI | CCATC | 2 cut(s) | 37, 61 |
| BceAI | ACGGC | 1 cut(s) | 246 |
| BciT130I | CCWGG | 1 cut(s) | 204 |
| BcoDI | GTCTC | 1 cut(s) | 71 |
| BfmI | CTRYAG | 1 cut(s) | 109 |
| Bme1390I | CCNGG | 1 cut(s) | 204 |
| BmgT120I | GGNCC | 1 cut(s) | 175 |
| BmrFI | CCNGG | 1 cut(s) | 204 |
| BpmI | CTGGAG | 3 cut(s) | 122, 224, 258 |
| BpuEI | CTTGAG | 2 cut(s) | 23, 308 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 43, 184 |
| Bse1I | ACTGG | 2 cut(s) | 139, 241 |
| BseBI | CCWGG | 1 cut(s) | 204 |
| BseGI | GGATG | 2 cut(s) | 33, 76 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 43, 184 |
| BseMII | CTCAG | 1 cut(s) | 29 |
| BseNI | ACTGG | 2 cut(s) | 139, 241 |
| BshFI | GGCC | 2 cut(s) | 22, 177 |
| BsiHKAI | GWGCWC | 1 cut(s) | 274 |
| BslFI | GGGAC | 1 cut(s) | 77 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 43, 184 |
| BsmAI | GTCTC | 1 cut(s) | 71 |
| BsmFI | GGGAC | 1 cut(s) | 77 |
| BsmI | GAATGC | 1 cut(s) | 300 |
| BsnI | GGCC | 2 cut(s) | 22, 177 |
| Bsp1286I | GDGCHC | 1 cut(s) | 274 |
| Bsp143I | GATC | 1 cut(s) | 234 |
| BspACI | CCGC | 1 cut(s) | 96 |
| BspANI | GGCC | 2 cut(s) | 22, 177 |
| BspCNI | CTCAG | 1 cut(s) | 28 |
| BspMAI | CTGCAG | 1 cut(s) | 113 |
| BspPI | GGATC | 1 cut(s) | 229 |
| BsrBI | CCGCTC | 1 cut(s) | 98 |
| BsrI | ACTGG | 2 cut(s) | 139, 241 |
| BssMI | GATC | 1 cut(s) | 234 |
| Bst2UI | CCWGG | 1 cut(s) | 204 |
| BstC8I | GCNNGC | 2 cut(s) | 24, 298 |
| BstDEI | CTNAG | 1 cut(s) | 15 |
| BstF5I | GGATG | 2 cut(s) | 33, 76 |
| BstKTI | GATC | 1 cut(s) | 237 |
| BstMAI | GTCTC | 1 cut(s) | 71 |
| BstMBI | GATC | 1 cut(s) | 234 |
| BstNI | CCWGG | 1 cut(s) | 204 |
| BstSCI | CCNGG | 1 cut(s) | 202 |
| BstSFI | CTRYAG | 1 cut(s) | 109 |
| BsuRI | GGCC | 2 cut(s) | 22, 177 |
| BtsCI | GGATG | 2 cut(s) | 33, 76 |
| Cac8I | GCNNGC | 2 cut(s) | 24, 298 |
| Cfr13I | GGNCC | 1 cut(s) | 175 |
| CviAII | CATG | 1 cut(s) | 267 |
| CviJI | RGCY | 4 cut(s) | 22, 26, 177, 261 |
| CviKI_1 | RGCY | 4 cut(s) | 22, 26, 177, 261 |
| DdeI | CTNAG | 1 cut(s) | 15 |
| DpnI | GATC | 1 cut(s) | 236 |
| DpnII | GATC | 1 cut(s) | 234 |
| EcoO109I | RGGNCCY | 1 cut(s) | 175 |
| EcoRII | CCWGG | 1 cut(s) | 202 |
| FaeI | CATG | 1 cut(s) | 270 |
| FaiI | YATR | 3 cut(s) | 168, 170, 268 |
| FaqI | GGGAC | 1 cut(s) | 77 |
| FatI | CATG | 1 cut(s) | 266 |
| FauI | CCCGC | 1 cut(s) | 103 |
| FauNDI | CATATG | 1 cut(s) | 168 |
| FokI | GGATG | 2 cut(s) | 20, 83 |
| GsuI | CTGGAG | 3 cut(s) | 122, 224, 258 |
| HaeIII | GGCC | 2 cut(s) | 22, 177 |
| Hin1II | CATG | 1 cut(s) | 270 |
| HincII | GTYRAC | 1 cut(s) | 246 |
| HindII | GTYRAC | 1 cut(s) | 246 |
| Hpy166II | GTNNAC | 1 cut(s) | 246 |
| Hpy188I | TCNGA | 1 cut(s) | 18 |
| Hpy188III | TCNNGA | 2 cut(s) | 40, 287 |
| Hpy8I | GTNNAC | 1 cut(s) | 246 |
| HpyAV | CCTTC | 1 cut(s) | 46 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 111, 172 |
| HpyF3I | CTNAG | 1 cut(s) | 15 |
| Hsp92II | CATG | 1 cut(s) | 270 |
| Kzo9I | GATC | 1 cut(s) | 234 |
| LmnI | GCTCC | 1 cut(s) | 277 |
| LpnPI | CCDG | 9 cut(s) | 36, 97, 152, 158, 189, 216, 254, 282, 288 |
| MalI | GATC | 1 cut(s) | 236 |
| MbiI | CCGCTC | 1 cut(s) | 98 |
| MboI | GATC | 1 cut(s) | 234 |
| MboII | GAAGA | 2 cut(s) | 208, 217 |
| MhlI | GDGCHC | 1 cut(s) | 274 |
| MluCI | AATT | 2 cut(s) | 60, 229 |
| MnlI | CCTC | 5 cut(s) | 12, 47, 188, 248, 283 |
| MseI | TTAA | 3 cut(s) | 63, 126, 307 |
| MspR9I | CCNGG | 1 cut(s) | 204 |
| Mva1269I | GAATGC | 1 cut(s) | 300 |
| MvaI | CCWGG | 1 cut(s) | 204 |
| NdeI | CATATG | 1 cut(s) | 168 |
| NdeII | GATC | 1 cut(s) | 234 |
| NlaIII | CATG | 1 cut(s) | 270 |
| PctI | GAATGC | 1 cut(s) | 300 |
| Psp6I | CCWGG | 1 cut(s) | 202 |
| PspGI | CCWGG | 1 cut(s) | 202 |
| PspPI | GGNCC | 1 cut(s) | 175 |
| PstI | CTGCAG | 1 cut(s) | 113 |
| SaqAI | TTAA | 3 cut(s) | 63, 126, 307 |
| Sau3AI | GATC | 1 cut(s) | 234 |
| Sau96I | GGNCC | 1 cut(s) | 175 |
| ScrFI | CCNGG | 1 cut(s) | 204 |
| SduI | GDGCHC | 1 cut(s) | 274 |
| SetI | ASST | 2 cut(s) | 28, 294 |
| SfcI | CTRYAG | 1 cut(s) | 109 |
| SmlI | CTYRAG | 2 cut(s) | 38, 287 |
| SmoI | CTYRAG | 2 cut(s) | 38, 287 |
| Sse9I | AATT | 2 cut(s) | 60, 229 |
| SsiI | CCGC | 1 cut(s) | 96 |
| StyD4I | CCNGG | 1 cut(s) | 202 |
| TasI | AATT | 2 cut(s) | 60, 229 |
| Tru1I | TTAA | 3 cut(s) | 63, 126, 307 |
| Tru9I | TTAA | 3 cut(s) | 63, 126, 307 |
| TspDTI | ATGAA | 1 cut(s) | 255 |