MD15G1379700.v1.1

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
46716604 .. 46719553
2950 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1379700.v1.1.491

Sequence Viewer

Length: 1530 bp
ATGGCTGGCCGTGAAATCTTCGCCGGCATGAGACGATGGGTCCCGCATTTTGCAAGCTCGGCAAGGCGGAGGCCGCTGTCATCTGTCTGCTCTTCGTCTTCGTCTTCGTTATCGTCGGCGGATAGGCGCAGAGACGACGAGCTTCAGAGCAAGATTATGGGGCTGAGAAAACCGGACCGGAGCGCAACCACAGTGATTCAGAATTGGGTCGACGGAGGCCACAGGGTCTCCGTTCTCGAACTCCGCTGCGTCTCCGTTCAGCTCCTGAAGTCTAAGCGCTTCAACCACGCTCTCCAGGTGCTAACATGGATGGAAACCCGAAGCGATTTTCGAATGTCGCCGGGTGATCATGCAATGAGGTTGCAGTCAATCATAAATGTGAATGGTATGTTGGAAGCTGAAGAGTATTTTGAGCAACTTAGCACTGCTTCAAAAAAAACTGCTTGTCTCCCCCTTCTTCATGGTTATGTTGTGGAGAGGGACACAGAGAAAGCCGAGGCGCTCATGCTGAAGCTTGGCGGGTTGGGGCTCATTGTGAACCCTAACCCGTATAACGAGATGATGAAGCTGTATATGTCCACATCTGAATATGGGAAAGTGCCCCTTGTTGTACAGCAGATGAAGAAAAACAAGATACCCTTAACTGTTTTATCCTATAACCTTTGGATGAATGCGAATGCAAAGCTATCCGGTTTTGGTTCGGTGGAGATGGTTTATAAAGAAATGTTGAATGATAACAACGTCGAGGTTGGATGGAGCACTCTGTCTACTTTAGCCGGTATCTATATGAAGGCAGGGCTTGTTGAGAAAGCCAGTTTCGCCCTGAGAAGTGCTGAAAAGAAGCTGTCTAATTGCAATCGCCTTGGTTATTCTTTCCTCATTACACAATATGCGTCTTTAAATAGTAAAGAGGACGTTCTGCGACTTTGGAAAGCTAGTAAAGCGGTAGCTGGGAGAATTCCATGTACCAATTACATGCAGATACTGTTGTGCTTGGTGAAGTTAGGTGATACTGTGGAAGCCGAGAGGATTTTTATGGAGTGGGAGTCCAATTGCTTTAGTTATGATATTCGAGTCTCCAACGTCCTTCTTGGTGCATATATGCGGAATGGAATGACTGAGAAAGCTGAGGCATTGCATCTACACACATTGGAGAGAGGCGGTCAACCAAATTATAAGACATGGGAGATCCTTATGGAAGGACGGTTGAAAAGCCAGAACATGGACAAAGCCGTTGAAGCGATGAAAAAAGGGTTTTGTATGTTGCAAGATTGTCATTGGAGGCCATCGGAGGAAACTGTAATGGCCTTTGCCGATTATTTCGAAAAGCATGGGAACATTGAGTATGCAAATTGGTATATCAGAGTTATACGTTCATTCGGTTTTGCAAGTTCGACATTATACAAATCACTGCTTAGAATGCACCTTTCTGCTCAGAGATCAGCCTCTGACATCCTGAAGATGATGGAGGAGGACAAAGTCGAGATGGATGAAGAGACTTCTGCCCTTGTTCAAGCCTTCAGGGTGTGA

Protein Analysis

510

Amino Acids

57.91

Weight (kDa)

8.99

Isoelectric Point (pI)

49.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 717, 1176
AccB7I CCANNNNNTGG 1 cut(s) 1222
AccI GTMKAC 2 cut(s) 210, 767
AciI CCGC 9 cut(s) 44, 67, 74, 119, 244, 519, 944, 1105, 1161
AclWI GGATC 1 cut(s) 1183
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 957
AcuI CTGAAG 6 cut(s) 128, 287, 420, 530, 1478, 1504
AfaI GTAC 2 cut(s) 612, 967
AfeI AGCGCT 1 cut(s) 278
AfiI CCNNNNNNNGG 1 cut(s) 1222
AgsI TTSAA 6 cut(s) 283, 432, 730, 1210, 1238, 1514
AhdI GACNNNNNGTC 1 cut(s) 38
AjnI CCWGG 1 cut(s) 294
AjuI GAANNNNNNNTTGG 2 cut(s) 374, 406
Alw21I GWGCWC 1 cut(s) 761
Alw26I GTCTC 7 cut(s) 25, 126, 232, 256, 452, 1081, 1490
AlwI GGATC 1 cut(s) 1183
AlwNI CAGNNNCTG 3 cut(s) 265, 985, 1448
Aor51HI AGCGCT 1 cut(s) 278
AoxI GGCC 5 cut(s) 7, 71, 217, 1283, 1305
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 957
AspLEI GCGC 4 cut(s) 129, 185, 279, 502
AspS9I GGNCC 2 cut(s) 40, 175
AsuC2I CCSGG 1 cut(s) 342
AsuHPI GGTGA 3 cut(s) 356, 1009, 1019
AsuII TTCGAA 2 cut(s) 331, 1323
AvaII GGWCC 2 cut(s) 40, 175
BaeGI GKGCMC 1 cut(s) 603
BaeI ACNNNNGTAYC 2 cut(s) 974, 1007
BanII GRGCYC 1 cut(s) 531
BbsI GAAGAC 2 cut(s) 90, 96
Bbv12I GWGCWC 1 cut(s) 761
BbvCI CCTCAGC 1 cut(s) 1128
BbvI GCAGC 1 cut(s) 233
BccI CCATC 7 cut(s) 30, 304, 703, 747, 1294, 1459, 1480
BceAI ACGGC 1 cut(s) 1217
BciT130I CCWGG 1 cut(s) 296
BclI TGATCA 1 cut(s) 346
BcnI CCSGG 1 cut(s) 342
BcoDI GTCTC 7 cut(s) 25, 126, 232, 256, 452, 1081, 1490
BfaI CTAG 1 cut(s) 936
BfoI RGCGCY 2 cut(s) 280, 503
BisI GCNGC 2 cut(s) 74, 247
BlsI GCNGC 2 cut(s) 75, 248
Bme1390I CCNGG 2 cut(s) 296, 342
Bme18I GGWCC 2 cut(s) 40, 175
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgT120I GGNCC 2 cut(s) 40, 175
BmiI GGNNCC 2 cut(s) 41, 42
BmrFI CCNGG 2 cut(s) 296, 342
BmsI GCATC 1 cut(s) 1147
BpiI GAAGAC 2 cut(s) 90, 96
BpmI CTGGAG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 1128
Bpu14I TTCGAA 2 cut(s) 331, 1323
BpuMI CCSGG 1 cut(s) 342
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 2 cut(s) 495, 862
BsaWI WCCGGW 3 cut(s) 172, 177, 689
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 1031, 1061
Bsc4I CCNNNNNNNGG 1 cut(s) 1222
Bse118I RCCGGY 2 cut(s) 23, 776
Bse1I ACTGG 1 cut(s) 813
Bse3DI GCAATG 2 cut(s) 360, 1133
BseBI CCWGG 1 cut(s) 296
BseDI CCNNGG 2 cut(s) 495, 862
BseGI GGATG 5 cut(s) 315, 672, 758, 1452, 1495
BseLI CCNNNNNNNGG 1 cut(s) 1222
BseMI GCAATG 2 cut(s) 360, 1133
BseMII CTCAG 5 cut(s) 155, 815, 1110, 1119, 1448
BseNI ACTGG 1 cut(s) 813
BseRI GAGGAG 1 cut(s) 1484
BseSI GKGCMC 1 cut(s) 603
BseXI GCAGC 1 cut(s) 233
BseYI CCCAGC 1 cut(s) 950
BshFI GGCC 5 cut(s) 9, 73, 219, 1285, 1307
BsiHKAI GWGCWC 1 cut(s) 761
BsiSI CCGG 6 cut(s) 24, 173, 178, 341, 690, 777
BslFI GGGAC 2 cut(s) 26, 494
BslI CCNNNNNNNGG 1 cut(s) 1222
BsmAI GTCTC 7 cut(s) 25, 126, 232, 256, 452, 1081, 1490
BsmBI CGTCTC 3 cut(s) 25, 126, 256
BsmFI GGGAC 2 cut(s) 26, 494
BsmI GAATGC 3 cut(s) 676, 682, 1425
BsnI GGCC 5 cut(s) 9, 73, 219, 1285, 1307
Bso31I GGTCTC 1 cut(s) 232
Bsp119I TTCGAA 2 cut(s) 331, 1323
Bsp1286I GDGCHC 3 cut(s) 531, 603, 761
Bsp1407I TGTACA 1 cut(s) 610
Bsp143I GATC 3 cut(s) 346, 1188, 1439
BspACI CCGC 9 cut(s) 44, 67, 74, 119, 244, 519, 944, 1105, 1161
BspANI GGCC 5 cut(s) 9, 73, 219, 1285, 1307
BspCNI CTCAG 5 cut(s) 156, 816, 1111, 1120, 1447
BspLI GGNNCC 2 cut(s) 41, 42
BspPI GGATC 1 cut(s) 1183
BspQI GCTCTTC 1 cut(s) 97
BspT104I TTCGAA 2 cut(s) 331, 1323
BspTNI GGTCTC 1 cut(s) 232
BsrDI GCAATG 2 cut(s) 360, 1133
BsrFI RCCGGY 2 cut(s) 23, 776
BsrGI TGTACA 1 cut(s) 610
BsrI ACTGG 1 cut(s) 813
BssAI RCCGGY 2 cut(s) 23, 776
BssECI CCNNGG 2 cut(s) 495, 862
BssMI GATC 3 cut(s) 346, 1188, 1439
BssT1I CCWWGG 1 cut(s) 862
Bst2UI CCWGG 1 cut(s) 296
Bst4CI ACNGT 6 cut(s) 193, 646, 987, 1015, 1206, 1300
Bst6I CTCTTC 3 cut(s) 97, 396, 1488
BstAUI TGTACA 1 cut(s) 610
BstBI TTCGAA 2 cut(s) 331, 1323
BstC8I GCNNGC 3 cut(s) 7, 25, 55
BstDEI CTNAG 8 cut(s) 164, 273, 419, 824, 1119, 1128, 1415, 1434
BstF5I GGATG 5 cut(s) 315, 672, 758, 1452, 1495
BstH2I RGCGCY 2 cut(s) 280, 503
BstHHI GCGC 4 cut(s) 129, 185, 279, 502
BstKTI GATC 3 cut(s) 349, 1191, 1442
BstMAI GTCTC 7 cut(s) 25, 126, 232, 256, 452, 1081, 1490
BstMBI GATC 3 cut(s) 346, 1188, 1439
BstMWI GCNNNNNNNGC 6 cut(s) 59, 73, 818, 941, 1238, 1420
BstNI CCWGG 1 cut(s) 296
BstNSI RCATGY 1 cut(s) 979
BstSCI CCNGG 2 cut(s) 294, 340
BstSLI GKGCMC 1 cut(s) 603
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 2 cut(s) 90, 96
BstX2I RGATCY 1 cut(s) 1188
BstYI RGATCY 1 cut(s) 1188
BsuRI GGCC 5 cut(s) 9, 73, 219, 1285, 1307
BtgZI GCGATG 1 cut(s) 1256
BtsCI GGATG 5 cut(s) 315, 672, 758, 1452, 1495
BtsI GCAGTG 2 cut(s) 423, 1409
BtsIMutI CAGTG 3 cut(s) 198, 423, 1409
Cac8I GCNNGC 3 cut(s) 7, 25, 55
CaiI CAGNNNCTG 3 cut(s) 265, 985, 1448
CfoI GCGC 4 cut(s) 129, 185, 279, 502
Cfr10I RCCGGY 2 cut(s) 23, 776
Cfr13I GGNCC 2 cut(s) 40, 175
CpoI CGGWCCG 1 cut(s) 175
CseI GACGC 2 cut(s) 238, 882
Csp6I GTAC 2 cut(s) 611, 966
CspI CGGWCCG 1 cut(s) 175
CviQI GTAC 2 cut(s) 611, 966
DdeI CTNAG 8 cut(s) 164, 273, 419, 824, 1119, 1128, 1415, 1434
DpnI GATC 3 cut(s) 348, 1190, 1441
DpnII GATC 3 cut(s) 346, 1188, 1439
DraI TTTAAA 1 cut(s) 900
DriI GACNNNNNGTC 1 cut(s) 38
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 3 cut(s) 97, 396, 1488
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 3 cut(s) 97, 396, 1488
EciI GGCGGA 2 cut(s) 82, 134
Eco130I CCWWGG 1 cut(s) 862
Eco24I GRGCYC 1 cut(s) 531
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 40, 175
Eco47III AGCGCT 1 cut(s) 278
Eco57I CTGAAG 6 cut(s) 128, 287, 420, 530, 1478, 1504
EcoO109I RGGNCCY 1 cut(s) 40
EcoRI GAATTC 1 cut(s) 957
EcoRII CCWGG 1 cut(s) 294
EcoT14I CCWWGG 1 cut(s) 862
EcoT38I GRGCYC 1 cut(s) 531
ErhI CCWWGG 1 cut(s) 862
Esp3I CGTCTC 3 cut(s) 25, 126, 256
FalI AAGNNNNNCTT 4 cut(s) 588, 620, 623, 655
FaqI GGGAC 2 cut(s) 26, 494
FauI CCCGC 2 cut(s) 51, 512
FbaI TGATCA 1 cut(s) 346
FblI GTMKAC 2 cut(s) 210, 767
Fnu4HI GCNGC 2 cut(s) 74, 247
FokI GGATG 5 cut(s) 322, 679, 765, 1439, 1502
FriOI GRGCYC 1 cut(s) 531
Fsp4HI GCNGC 2 cut(s) 74, 247
FspBI CTAG 1 cut(s) 936
GlaI GCGC 4 cut(s) 128, 184, 278, 501
GluI GCNGC 2 cut(s) 74, 247
GsaI CCCAGC 1 cut(s) 954
GsuI CTGGAG 1 cut(s) 278
HaeII RGCGCY 2 cut(s) 280, 503
HaeIII GGCC 5 cut(s) 9, 73, 219, 1285, 1307
HapII CCGG 6 cut(s) 24, 173, 178, 341, 690, 777
HgaI GACGC 2 cut(s) 238, 882
HhaI GCGC 4 cut(s) 129, 185, 279, 502
Hin6I GCGC 4 cut(s) 127, 183, 277, 500
HinP1I GCGC 4 cut(s) 127, 183, 277, 500
HincII GTYRAC 2 cut(s) 211, 1166
HindII GTYRAC 2 cut(s) 211, 1166
HindIII AAGCTT 1 cut(s) 512
HinfI GANTC 3 cut(s) 196, 1046, 1074
HpaII CCGG 6 cut(s) 24, 173, 178, 341, 690, 777
HphI GGTGA 3 cut(s) 356, 1009, 1019
Hpy166II GTNNAC 5 cut(s) 211, 538, 579, 768, 1166
Hpy188I TCNGA 7 cut(s) 147, 201, 586, 1291, 1364, 1437, 1450
Hpy188III TCNNGA 4 cut(s) 236, 265, 1456, 1483
Hpy8I GTNNAC 5 cut(s) 211, 538, 579, 768, 1166
Hpy99I CGWCG 4 cut(s) 118, 140, 215, 746
HpyAV CCTTC 5 cut(s) 464, 784, 1097, 1193, 1528
HpyCH4III ACNGT 6 cut(s) 193, 646, 987, 1015, 1206, 1300
HpyCH4IV ACGT 4 cut(s) 741, 915, 1083, 1372
HpyF10VI GCNNNNNNNGC 6 cut(s) 59, 73, 818, 941, 1238, 1420
HpyF3I CTNAG 8 cut(s) 164, 273, 419, 824, 1119, 1128, 1415, 1434
HpySE526I ACGT 4 cut(s) 741, 915, 1083, 1372
HspAI GCGC 4 cut(s) 127, 183, 277, 500
KflI GGGWCCC 1 cut(s) 40
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 3 cut(s) 346, 1188, 1439
LguI GCTCTTC 1 cut(s) 97
LmnI GCTCC 3 cut(s) 180, 267, 756
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 1147
MaeI CTAG 1 cut(s) 936
MaeII ACGT 4 cut(s) 741, 915, 1083, 1372
MalI GATC 3 cut(s) 348, 1190, 1441
MboI GATC 3 cut(s) 346, 1188, 1439
MboII GAAGA 9 cut(s) 10, 84, 90, 96, 413, 449, 634, 1471, 1505
MfeI CAATTG 1 cut(s) 1051
MflI RGATCY 1 cut(s) 1188
MhlI GDGCHC 3 cut(s) 531, 603, 761
MluCI AATT 7 cut(s) 202, 850, 957, 970, 1051, 1171, 1351
MlyI GAGTC 2 cut(s) 1055, 1083
MmeI TCCRAC 3 cut(s) 372, 730, 1104
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 2 cut(s) 641, 899
MslI CAYNNNNRTG 2 cut(s) 377, 465
MspA1I CMGCKG 2 cut(s) 76, 246
MspI CCGG 6 cut(s) 24, 173, 178, 341, 690, 777
MspR9I CCNGG 2 cut(s) 296, 342
MunI CAATTG 1 cut(s) 1051
Mva1269I GAATGC 3 cut(s) 676, 682, 1425
MvaI CCWGG 1 cut(s) 296
MwoI GCNNNNNNNGC 6 cut(s) 59, 73, 818, 941, 1238, 1420
NaeI GCCGGC 1 cut(s) 25
NciI CCSGG 1 cut(s) 342
NdeII GATC 3 cut(s) 346, 1188, 1439
NgoMIV GCCGGC 1 cut(s) 23
NlaIV GGNNCC 2 cut(s) 41, 42
NmeAIII GCCGAG 3 cut(s) 38, 520, 1048
NspI RCATGY 1 cut(s) 979
NspV TTCGAA 2 cut(s) 331, 1323
PciSI GCTCTTC 1 cut(s) 97
PctI GAATGC 3 cut(s) 676, 682, 1425
PdiI GCCGGC 1 cut(s) 25
PfeI GAWTC 1 cut(s) 196
PflFI GACNNNGTC 1 cut(s) 1478
PflMI CCANNNNNTGG 1 cut(s) 1222
PkrI GCNGC 2 cut(s) 75, 248
PleI GAGTC 2 cut(s) 1054, 1082
PpsI GAGTC 2 cut(s) 1054, 1082
PpuMI RGGWCCY 1 cut(s) 40
PsiI TTATAA 2 cut(s) 717, 1176
Psp5II RGGWCCY 1 cut(s) 40
Psp6I CCWGG 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 950
PspGI CCWGG 1 cut(s) 294
PspN4I GGNNCC 2 cut(s) 41, 42
PspPI GGNCC 2 cut(s) 40, 175
PspPPI RGGWCCY 1 cut(s) 40
PstNI CAGNNNCTG 3 cut(s) 265, 985, 1448
PsuI RGATCY 1 cut(s) 1188
PsyI GACNNNGTC 1 cut(s) 1478
RsaI GTAC 2 cut(s) 612, 967
RsaNI GTAC 2 cut(s) 611, 966
RseI CAYNNNNRTG 2 cut(s) 377, 465
Rsr2I CGGWCCG 1 cut(s) 175
RsrII CGGWCCG 1 cut(s) 175
SalI GTCGAC 1 cut(s) 209
SapI GCTCTTC 1 cut(s) 97
SaqAI TTAA 2 cut(s) 641, 899
SatI GCNGC 2 cut(s) 74, 247
Sau3AI GATC 3 cut(s) 346, 1188, 1439
Sau96I GGNCC 2 cut(s) 40, 175
SchI GAGTC 2 cut(s) 1055, 1083
ScrFI CCNGG 2 cut(s) 296, 342
SduI GDGCHC 3 cut(s) 531, 603, 761
SfaNI GCATC 1 cut(s) 1147
SfuI TTCGAA 2 cut(s) 331, 1323
SinI GGWCC 2 cut(s) 40, 175
SmiMI CAYNNNNRTG 2 cut(s) 377, 465
Sse9I AATT 7 cut(s) 202, 850, 957, 970, 1051, 1171, 1351
SsiI CCGC 9 cut(s) 44, 67, 74, 119, 244, 519, 944, 1105, 1161
SspMI CTAG 1 cut(s) 936
StyD4I CCNGG 2 cut(s) 294, 340
StyI CCWWGG 1 cut(s) 862
TaaI ACNGT 6 cut(s) 193, 646, 987, 1015, 1206, 1300
TaiI ACGT 4 cut(s) 744, 918, 1086, 1375
TaqI TCGA 8 cut(s) 210, 237, 331, 744, 1072, 1323, 1394, 1482
TasI AATT 7 cut(s) 202, 850, 957, 970, 1051, 1171, 1351
TatI WGTACW 1 cut(s) 610
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 2 cut(s) 641, 899
Tru9I TTAA 2 cut(s) 641, 899
TscAI CASTG 3 cut(s) 198, 430, 1416
TseI GCWGC 1 cut(s) 246
TspDTI ATGAA 8 cut(s) 449, 578, 635, 683, 803, 1259, 1365, 1506
TspGWI ACGGA 3 cut(s) 220, 228, 244
TspRI CASTG 3 cut(s) 198, 430, 1416
Tth111I GACNNNGTC 1 cut(s) 1478
Van91I CCANNNNNTGG 1 cut(s) 1222
VpaK11BI GGWCC 2 cut(s) 40, 175
XapI RAATTY 1 cut(s) 957
XceI RCATGY 1 cut(s) 979
XmiI GTMKAC 2 cut(s) 210, 767
XspI CTAG 1 cut(s) 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.