Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0005310

Physical Location & Seq

Genomic Coordinates Reverse (-)

52502859 .. 52503832

Gene Structure 974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000029974

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCTCCGGTAGATCATGTCATAAGGTTAAGATCAACCATCAAGGTGAATGGAATGTTGGAAGCTGAAGAGTATTTTGAGCATTTGACTGATACTGCATCACGAAAAGCAGCTTGTGTTGCTCTTCTACATGGTTATGTTGTCGAAAGGGACGTTGAGAAGGCCAAGGCTTTGATGCAGAAGCTTGGTGGGATGGAGCTGGTAGTGAGCCCTCATTTGTATAATGAGATGATGAAGTTGTATATGGCCACGGCACAGTTTGGGAAGGTACCGCTTGTTATACAGCAAATGCGGAGTAACAAGATACCTCTGACTGGTCTTTTGTATAATCTTTGTATGAATGCGTGTGCAGAGCTATCTAGGGTTGCTTCGGTTGAGATGGTTTATAGAGAAATGGTGAGTGATGAGATGTTCAGGTATGATGTTCGAGTCTCCAATGTCCTTCTAGGTGTATACATGCGGAATAGGATGGTGGAAAAAGCCGAGTCATTACATCAGCACCCATTGGATAGAGGCGTTTGCCCAAATTATAAGACATGGGAGATTCTTATGGAAGGAAGGCTGAAAAACCAAAACATGGATGAAGCAGTTGAAGCAATGAAACAAGGATTTGCAAGGTTGCAAGACTGTCATTGGAGGCCATCAGATGATACTGTTATGGCCTTTGCTTATTATTTGAAAGGCAAGGAAAATTTGAATATTAAACTATATACATATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_3

Protein Analysis

241

Amino Acids

27.72

Weight (kDa)

7.65

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27460
fragaria_vesca	FvH4_5g36010 FvH4_5g36010 FvH4_5g36010 FvH4_5g36010
malus_domestica	MD00G1136100.v1.1 MD15G1379700.v1.1
prunus_persica	Prupe.1G525900_v2.0.a1
pyrus_communis	pycom15g34030
rosa_chinensis	RchiOBHm_Chr1g0327731 RchiOBHm_Chr7g0237751
rosa_laevigata	RLG00000000970 RLG00000029974
rosa_multiflora	Rmu_ssc0000067.1_g000033
rosa_roxburghii	Rroxscaffold_3G00223780
rosa_rugosa	Rorug01G0070100 Rorug07G0307800
rosa_samantha	Rh1AG086500 Rh1CG084100 Rh1DG091000 Rh1DG091100 Rh4AG105300 Rh4CG113800 Rh7AG463800 Rh7BG433900 Rh7CG480800 Rh7DG449700
rosa_wichuraiana	Rw0G013090 Rw7G038370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	531
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccB7I	CCANNNNNTGG	1 cut(s)	577
AccI	GTMKAC	1 cut(s)	453
AciI	CCGC	3 cut(s)	272, 292, 460
AcoI	YGGCCR	1 cut(s)	246
AcsI	RAATTY	1 cut(s)	691
AcuI	CTGAAG	1 cut(s)	87
AfaI	GTAC	1 cut(s)	270
AfiI	CCNNNNNNNGG	2 cut(s)	314, 577
AgsI	TTSAA	3 cut(s)	593, 679, 697
AjuI	GAANNNNNNNTTGG	2 cut(s)	41, 73
AluBI	AGCT	5 cut(s)	65, 113, 184, 199, 355
AluI	AGCT	5 cut(s)	65, 113, 184, 199, 355
Alw26I	GTCTC	2 cut(s)	9, 436
AoxI	GGCC	4 cut(s)	162, 246, 638, 660
ApeKI	GCWGC	1 cut(s)	110
ApoI	RAATTY	1 cut(s)	691
ArsI	GACNNNNNNTTYG	2 cut(s)	304, 336
Asp718I	GGTACC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	58, 409
BalI	TGGCCA	1 cut(s)	248
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	212
BbvI	GCAGC	1 cut(s)	122
BccI	CCATC	5 cut(s)	47, 187, 373, 463, 649
BceAI	ACGGC	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	9, 436
BfaI	CTAG	2 cut(s)	360, 446
BisI	GCNGC	1 cut(s)	111
BlsI	GCNGC	1 cut(s)	112
BmiI	GGNNCC	1 cut(s)	270
BmsI	GCATC	2 cut(s)	107, 165
BsaJI	CCNNGG	2 cut(s)	165, 249
BsaWI	WCCGGW	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 577
Bse1I	ACTGG	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	603
BseDI	CCNNGG	2 cut(s)	165, 249
BseGI	GGATG	3 cut(s)	198, 474, 586
BseLI	CCNNNNNNNGG	2 cut(s)	314, 577
BseMI	GCAATG	1 cut(s)	603
BseNI	ACTGG	1 cut(s)	319
BseXI	GCAGC	1 cut(s)	122
BsgI	GTGCAG	1 cut(s)	369
BshFI	GGCC	4 cut(s)	164, 248, 640, 662
BshNI	GGYRCC	1 cut(s)	268
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	2 cut(s)	314, 577
BsmAI	GTCTC	2 cut(s)	9, 436
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	346
BsnI	GGCC	4 cut(s)	164, 248, 640, 662
Bsp1286I	GDGCHC	1 cut(s)	212
Bsp143I	GATC	2 cut(s)	13, 32
BspACI	CCGC	3 cut(s)	272, 292, 460
BspANI	GGCC	4 cut(s)	164, 248, 640, 662
BspLI	GGNNCC	1 cut(s)	270
BspQI	GCTCTTC	1 cut(s)	129
BspT107I	GGYRCC	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	603
BsrI	ACTGG	1 cut(s)	319
BssECI	CCNNGG	2 cut(s)	165, 249
BssMI	GATC	2 cut(s)	13, 32
BssNAI	GTATAC	1 cut(s)	454
BssT1I	CCWWGG	1 cut(s)	165
Bst1107I	GTATAC	1 cut(s)	454
Bst4CI	ACNGT	3 cut(s)	258, 629, 655
Bst6I	CTCTTC	2 cut(s)	63, 129
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	3 cut(s)	198, 474, 586
BstKTI	GATC	2 cut(s)	16, 35
BstMAI	GTCTC	2 cut(s)	9, 436
BstMBI	GATC	2 cut(s)	13, 32
BstMWI	GCNNNNNNNGC	2 cut(s)	119, 593
BstNSI	RCATGY	1 cut(s)	460
BstV1I	GCAGC	1 cut(s)	122
BstZ17I	GTATAC	1 cut(s)	454
BsuRI	GGCC	4 cut(s)	164, 248, 640, 662
BtgI	CCRYGG	1 cut(s)	249
BtsCI	GGATG	3 cut(s)	198, 474, 586
Csp6I	GTAC	1 cut(s)	269
CviAII	CATG	5 cut(s)	17, 131, 457, 537, 577
CviQI	GTAC	1 cut(s)	269
DpnI	GATC	2 cut(s)	15, 34
DpnII	GATC	2 cut(s)	13, 32
EaeI	YGGCCR	1 cut(s)	246
Eam1104I	CTCTTC	2 cut(s)	63, 129
EarI	CTCTTC	2 cut(s)	63, 129
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	212
Eco57I	CTGAAG	1 cut(s)	87
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	212
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	5 cut(s)	20, 134, 460, 540, 580
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	5 cut(s)	16, 130, 456, 536, 576
FblI	GTMKAC	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	111
FokI	GGATG	3 cut(s)	205, 481, 593
FriOI	GRGCYC	1 cut(s)	212
Fsp4HI	GCNGC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	360, 446
GluI	GCNGC	1 cut(s)	111
HaeIII	GGCC	4 cut(s)	164, 248, 640, 662
HapII	CCGG	1 cut(s)	8
Hin1II	CATG	5 cut(s)	20, 134, 460, 540, 580
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	429, 485, 544
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	2 cut(s)	58, 409
Hpy166II	GTNNAC	1 cut(s)	454
Hpy188I	TCNGA	2 cut(s)	312, 646
Hpy188III	TCNNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	454
HpyAV	CCTTC	5 cut(s)	154, 259, 452, 548, 552
HpyCH4III	ACNGT	3 cut(s)	258, 629, 655
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	5 cut(s)	98, 178, 350, 614, 622
HpyF10VI	GCNNNNNNNGC	2 cut(s)	119, 593
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	5 cut(s)	20, 134, 460, 540, 580
KpnI	GGTACC	1 cut(s)	272
Kzo9I	GATC	2 cut(s)	13, 32
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	196
LpnPI	CCDG	4 cut(s)	21, 185, 300, 400
Lsp1109I	GCAGC	1 cut(s)	122
LweI	GCATC	2 cut(s)	107, 165
MaeI	CTAG	2 cut(s)	360, 446
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	2 cut(s)	15, 34
MboI	GATC	2 cut(s)	13, 32
MboII	GAAGA	2 cut(s)	80, 116
MhlI	GDGCHC	1 cut(s)	212
MlsI	TGGCCA	1 cut(s)	248
MluCI	AATT	3 cut(s)	526, 691, 718
MluNI	TGGCCA	1 cut(s)	248
MlyI	GAGTC	2 cut(s)	438, 494
MmeI	TCCRAC	1 cut(s)	39
MnlI	CCTC	4 cut(s)	222, 318, 506, 630
Mox20I	TGGCCA	1 cut(s)	248
MscI	TGGCCA	1 cut(s)	248
MseI	TTAA	3 cut(s)	29, 702, 721
MslI	CAYNNNNRTG	2 cut(s)	44, 135
Msp20I	TGGCCA	1 cut(s)	248
MspI	CCGG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	119, 593
NdeII	GATC	2 cut(s)	13, 32
NlaIII	CATG	5 cut(s)	20, 134, 460, 540, 580
NlaIV	GGNNCC	1 cut(s)	270
NmeAIII	GCCGAG	1 cut(s)	508
NspI	RCATGY	1 cut(s)	460
PciSI	GCTCTTC	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	150
PctI	GAATGC	1 cut(s)	346
PfeI	GAWTC	1 cut(s)	544
PflMI	CCANNNNNTGG	1 cut(s)	577
PkrI	GCNGC	1 cut(s)	112
PleI	GAGTC	2 cut(s)	437, 493
PpsI	GAGTC	2 cut(s)	437, 493
PsiI	TTATAA	1 cut(s)	531
PspN4I	GGNNCC	1 cut(s)	270
RsaI	GTAC	1 cut(s)	270
RsaNI	GTAC	1 cut(s)	269
RseI	CAYNNNNRTG	2 cut(s)	44, 135
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	3 cut(s)	29, 702, 721
SatI	GCNGC	1 cut(s)	111
Sau3AI	GATC	2 cut(s)	13, 32
SchI	GAGTC	2 cut(s)	438, 494
SduI	GDGCHC	1 cut(s)	212
SfaNI	GCATC	2 cut(s)	107, 165
SmiMI	CAYNNNNRTG	2 cut(s)	44, 135
Sse9I	AATT	3 cut(s)	526, 691, 718
SsiI	CCGC	3 cut(s)	272, 292, 460
SspI	AATATT	1 cut(s)	700
SspMI	CTAG	2 cut(s)	360, 446
StyI	CCWWGG	1 cut(s)	165
TaaI	ACNGT	3 cut(s)	258, 629, 655
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	2 cut(s)	144, 427
TasI	AATT	3 cut(s)	526, 691, 718
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	3 cut(s)	29, 702, 721
Tru9I	TTAA	3 cut(s)	29, 702, 721
TseI	GCWGC	1 cut(s)	110
TspDTI	ATGAA	4 cut(s)	248, 353, 597, 614
Van91I	CCANNNNNTGG	1 cut(s)	577
XapI	RAATTY	1 cut(s)	691
XceI	RCATGY	1 cut(s)	460
XmiI	GTMKAC	1 cut(s)	453
XspI	CTAG	2 cut(s)	360, 446

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.