AT5G27470

seryl-tRNA synthetase serine--tRNA ligase

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
9694938 .. 9697389
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G27470.1

Sequence Viewer

Length: 1356 bp
ATGTTGGATATCAATCTATTTCGTGAAGAGAAAGGTAACAATCCGGAGATTATCCGAGAATCGCAACGCCGGAGATTTGCCAGCGTTGAAATCGTCGATGAGATCATTAAGCTGGACAAGGAATGGCGTCAGCGTCAATTTGAAGTTGATAGCTTCAGAAAGGAGTTCAACAAGCTCAATAAGCAAGTGGCGCAGCTCAAAATTAAAAAAGAAGATGCGAGTGAGATTATTCAACAAACTGAGAAAAACAAACAAGATTCTACTGCAAAGGAGGCTGAAGTTCGTGAAGCTTATGCTGCTTTGAAAGCCAAGTTGGAGCAAGTTGGTAATTTGGTCCATGATTCTGTTCCAGTTGATAAGGACGAGGCTAATAATCTTGTGATTAAACTGTGGGGTGAAAAGCGGTTTTCTACGCCTGGTCTGAAGCTGAAAAACCATGTGGATCTTGTTGAGCTTCTCGGTATTGCAGATACCAAAAGAGGTGCTGAAATCGCTGGAGCAAGAGGCTTTTTCTTGAAAGGAGATGGTTTGATGCTTAACCAAGCTCTTATCAACTTTGGGTTAACTTTCTTGAAAAAGAGAGGATTCACAGGATTGCAACCTCCTTTTTTCATGAGGAAGGATGTTATGGCCAAGTGCGCACAATTGGCACAGTTCGATGAAGAGCTTTACAAGGTGACTGGTGAAGGAGATGACAAATACCTCATTGCAACTGCTGAGCAGCCTCTTTGTGCGTACCATATTGATGAATGGATTCATCCGACTGAGCTTCCCCTAAGATATGCTGGTTACTCATCCTGCTTTAGAAAAGAAGCCGGTTCACATGGAAGAGACACCCTTGGTATTTTCCGTGTTCACCAGTTTGAGAAAATTGAACAGTTTTGCATCACCGGCCCTAACGAGAATGCCTCGTGGGAAATGCTCGATGAGATGATGAAGAACTCTGAAGATTTTTACCAAGCGCTAAAACTTCCATACCAAATCGTCTCGATCGTCTCTGGAGCATTGAATGATGCAGCTGCGAAAAAGTACGATTTGGAAGCTTGGTTTCCTTCGTCCGAGACATTCAGGGAGCTTGTGTCTTGTTCCAACTGTACAGACTACCAGGCTCGCAGGCTTGAGATCAGATACGGTCAGAAAAAGAGCAATGAGCAGACAAAGCAGTATGTGCATATGCTGAATTCGACACTTACTGCAACAGAGAGGACCATTTGCTGCATTCTCGAGAACTACCAGCGAGAGGATGGTGTCGACATTCCTGAGGTTCTGCAGCCGTTTATGGGCGGAGAGACGTTTTTGCCTTTCAAGGCCAAGCCCGTAGTTGCTGATACCAAAGGGAAGAAATCGAAAGCTTGA

Protein Analysis

451

Amino Acids

51.63

Weight (kDa)

6.27

Isoelectric Point (pI)

35.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seryl_tRNA_N PF02403 1 - 112 1.3e-26 Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b PF00587 224 - 411 2.5e-44 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 640
AccI GTMKAC 1 cut(s) 1251
AccIII TCCGGA 1 cut(s) 43
AciI CCGC 2 cut(s) 403, 1284
AclWI GGATC 1 cut(s) 450
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 1 cut(s) 1180
AcuI CTGAAG 4 cut(s) 139, 297, 443, 966
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 3 cut(s) 737, 1031, 1096
AfeI AGCGCT 1 cut(s) 963
AfiI CCNNNNNNNGG 2 cut(s) 1240, 1280
AjnI CCWGG 2 cut(s) 415, 1104
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
Alw26I GTCTC 5 cut(s) 825, 991, 1000, 1055, 1283
AlwI GGATC 1 cut(s) 450
Ama87I CYCGRG 1 cut(s) 1223
Aor13HI TCCGGA 1 cut(s) 43
Aor51HI AGCGCT 1 cut(s) 963
AoxI GGCC 3 cut(s) 630, 892, 1308
ApeKI GCWGC 7 cut(s) 193, 296, 721, 1016, 1019, 1215, 1270
ApoI RAATTY 1 cut(s) 1180
Asp700I GAANNNNTTC 1 cut(s) 753
AspLEI GCGC 3 cut(s) 193, 641, 964
AspS9I GGNCC 3 cut(s) 334, 893, 1206
AsuHPI GGTGA 5 cut(s) 407, 688, 695, 848, 880
AvaI CYCGRG 1 cut(s) 1223
AvaII GGWCC 2 cut(s) 334, 1206
AxyI CCTNAGG 1 cut(s) 1260
BalI TGGCCA 1 cut(s) 632
BauI CACGAG 1 cut(s) 910
BbvI GCAGC 7 cut(s) 205, 283, 733, 1006, 1028, 1202, 1282
BccI CCATC 2 cut(s) 518, 1238
BceAI ACGGC 1 cut(s) 1258
BciT130I CCWGG 2 cut(s) 417, 1106
BcoDI GTCTC 5 cut(s) 825, 991, 1000, 1055, 1283
BfmI CTRYAG 1 cut(s) 1268
BfoI RGCGCY 1 cut(s) 965
BisI GCNGC 7 cut(s) 194, 297, 722, 1017, 1020, 1216, 1271
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 7 cut(s) 195, 298, 723, 1018, 1021, 1217, 1272
Bme1390I CCNGG 2 cut(s) 417, 1106
Bme18I GGWCC 2 cut(s) 334, 1206
BmeT110I CYCGRG 1 cut(s) 1223
BmgT120I GGNCC 3 cut(s) 334, 893, 1206
BmrFI CCNGG 2 cut(s) 417, 1106
BmsI GCATC 4 cut(s) 205, 522, 894, 1003
BplI GAGNNNNNCTC 2 cut(s) 893, 925
BpmI CTGGAG 2 cut(s) 516, 1020
Bpu1102I GCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 1139
BsaBI GATNNNNATC 1 cut(s) 12
BsaHI GRCGYC 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 838
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 1064, 1094
Bsc4I CCNNNNNNNGG 2 cut(s) 1240, 1280
Bse118I RCCGGY 2 cut(s) 815, 890
Bse1I ACTGG 3 cut(s) 350, 685, 859
Bse21I CCTNAGG 1 cut(s) 1260
Bse3DI GCAATG 2 cut(s) 705, 1153
Bse8I GATNNNNATC 1 cut(s) 12
BseAI TCCGGA 1 cut(s) 43
BseBI CCWGG 2 cut(s) 417, 1106
BseDI CCNNGG 1 cut(s) 838
BseGI GGATG 4 cut(s) 628, 757, 794, 1249
BseJI GATNNNNATC 1 cut(s) 12
BseLI CCNNNNNNNGG 2 cut(s) 1240, 1280
BseMI GCAATG 2 cut(s) 705, 1153
BseMII CTCAG 4 cut(s) 231, 708, 756, 1251
BseNI ACTGG 3 cut(s) 350, 685, 859
BseXI GCAGC 7 cut(s) 205, 283, 733, 1006, 1028, 1202, 1282
Bsh1285I CGRYCG 1 cut(s) 993
BshFI GGCC 3 cut(s) 632, 894, 1310
BsiEI CGRYCG 1 cut(s) 993
BsiHKCI CYCGRG 1 cut(s) 1223
BsiSI CCGG 4 cut(s) 44, 70, 816, 891
BslI CCNNNNNNNGG 2 cut(s) 1240, 1280
BsmAI GTCTC 5 cut(s) 825, 991, 1000, 1055, 1283
BsmBI CGTCTC 3 cut(s) 991, 1000, 1283
BsmI GAATGC 2 cut(s) 910, 1218
BsnI GGCC 3 cut(s) 632, 894, 1310
BsoBI CYCGRG 1 cut(s) 1223
Bsp13I TCCGGA 1 cut(s) 43
Bsp1407I TGTACA 1 cut(s) 1094
Bsp143I GATC 4 cut(s) 102, 442, 990, 1122
Bsp1720I GCTNAGC 1 cut(s) 717
BspACI CCGC 2 cut(s) 403, 1284
BspANI GGCC 3 cut(s) 632, 894, 1310
BspCNI CTCAG 4 cut(s) 232, 709, 757, 1252
BspEI TCCGGA 1 cut(s) 43
BspHI TCATGA 1 cut(s) 612
BspMAI CTGCAG 1 cut(s) 1272
BspPI GGATC 1 cut(s) 450
BspQI GCTCTTC 1 cut(s) 657
BsrDI GCAATG 2 cut(s) 705, 1153
BsrFI RCCGGY 2 cut(s) 815, 890
BsrGI TGTACA 1 cut(s) 1094
BsrI ACTGG 3 cut(s) 350, 685, 859
BssAI RCCGGY 2 cut(s) 815, 890
BssECI CCNNGG 1 cut(s) 838
BssMI GATC 4 cut(s) 102, 442, 990, 1122
BssNI GRCGYC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 910
BssT1I CCWWGG 1 cut(s) 838
Bst2BI CACGAG 1 cut(s) 910
Bst2UI CCWGG 2 cut(s) 417, 1106
Bst4CI ACNGT 5 cut(s) 390, 654, 879, 1094, 1133
Bst6I CTCTTC 3 cut(s) 21, 657, 823
BstACI GRCGYC 1 cut(s) 127
BstAPI GCANNNNNTGC 1 cut(s) 1168
BstAUI TGTACA 1 cut(s) 1094
BstC8I GCNNGC 3 cut(s) 82, 1111, 1115
BstDEI CTNAG 5 cut(s) 240, 717, 765, 776, 1260
BstF5I GGATG 4 cut(s) 628, 757, 794, 1249
BstH2I RGCGCY 1 cut(s) 965
BstHHI GCGC 3 cut(s) 193, 641, 964
BstKTI GATC 4 cut(s) 105, 445, 993, 1125
BstMAI GTCTC 5 cut(s) 825, 991, 1000, 1055, 1283
BstMBI GATC 4 cut(s) 102, 442, 990, 1122
BstMCI CGRYCG 1 cut(s) 993
BstNI CCWGG 2 cut(s) 417, 1106
BstSCI CCNGG 2 cut(s) 415, 1104
BstSFI CTRYAG 1 cut(s) 1268
BstV1I GCAGC 7 cut(s) 205, 283, 733, 1006, 1028, 1202, 1282
BstX2I RGATCY 1 cut(s) 442
BstYI RGATCY 1 cut(s) 442
Bsu36I CCTNAGG 1 cut(s) 1260
BsuRI GGCC 3 cut(s) 632, 894, 1310
BtsCI GGATG 4 cut(s) 628, 757, 794, 1249
Cac8I GCNNGC 3 cut(s) 82, 1111, 1115
CciI TCATGA 1 cut(s) 612
CfoI GCGC 3 cut(s) 193, 641, 964
Cfr10I RCCGGY 2 cut(s) 815, 890
Cfr13I GGNCC 3 cut(s) 334, 893, 1206
CseI GACGC 2 cut(s) 116, 122
Csp6I GTAC 3 cut(s) 736, 1030, 1095
CviAII CATG 4 cut(s) 338, 437, 613, 824
CviQI GTAC 3 cut(s) 736, 1030, 1095
DdeI CTNAG 5 cut(s) 240, 717, 765, 776, 1260
DpnI GATC 4 cut(s) 104, 444, 992, 1124
DpnII GATC 4 cut(s) 102, 442, 990, 1122
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 3 cut(s) 21, 657, 823
EarI CTCTTC 3 cut(s) 21, 657, 823
EciI GGCGGA 1 cut(s) 1299
Eco130I CCWWGG 1 cut(s) 838
Eco32I GATATC 1 cut(s) 10
Eco47I GGWCC 2 cut(s) 334, 1206
Eco47III AGCGCT 1 cut(s) 963
Eco57I CTGAAG 4 cut(s) 139, 297, 443, 966
Eco81I CCTNAGG 1 cut(s) 1260
Eco88I CYCGRG 1 cut(s) 1223
EcoRI GAATTC 1 cut(s) 1180
EcoRII CCWGG 2 cut(s) 415, 1104
EcoRV GATATC 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 838
ErhI CCWWGG 1 cut(s) 838
Esp3I CGTCTC 3 cut(s) 991, 1000, 1283
FaeI CATG 4 cut(s) 341, 440, 616, 827
FatI CATG 4 cut(s) 337, 436, 612, 823
FauNDI CATATG 1 cut(s) 1173
FblI GTMKAC 1 cut(s) 1251
Fnu4HI GCNGC 7 cut(s) 194, 297, 722, 1017, 1020, 1216, 1271
FokI GGATG 4 cut(s) 635, 744, 781, 1256
Fsp4HI GCNGC 7 cut(s) 194, 297, 722, 1017, 1020, 1216, 1271
FspAI RTGCGCAY 1 cut(s) 640
FspI TGCGCA 1 cut(s) 640
GlaI GCGC 3 cut(s) 192, 640, 963
GluI GCNGC 7 cut(s) 194, 297, 722, 1017, 1020, 1216, 1271
GsuI CTGGAG 2 cut(s) 516, 1020
HaeII RGCGCY 1 cut(s) 965
HaeIII GGCC 3 cut(s) 632, 894, 1310
HapII CCGG 4 cut(s) 44, 70, 816, 891
HgaI GACGC 2 cut(s) 116, 122
HhaI GCGC 3 cut(s) 193, 641, 964
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 4 cut(s) 341, 440, 616, 827
Hin6I GCGC 3 cut(s) 191, 639, 962
HinP1I GCGC 3 cut(s) 191, 639, 962
HincII GTYRAC 2 cut(s) 564, 1252
HindII GTYRAC 2 cut(s) 564, 1252
HindIII AAGCTT 3 cut(s) 288, 1041, 1350
HinfI GANTC 5 cut(s) 59, 257, 341, 585, 754
HpaI GTTAAC 1 cut(s) 564
HpaII CCGG 4 cut(s) 44, 70, 816, 891
HphI GGTGA 5 cut(s) 407, 688, 695, 848, 880
Hpy166II GTNNAC 4 cut(s) 564, 821, 856, 1252
Hpy188I TCNGA 8 cut(s) 56, 158, 423, 762, 946, 1060, 1127, 1137
Hpy8I GTNNAC 4 cut(s) 564, 821, 856, 1252
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 3 cut(s) 613, 680, 1062
HpyCH4III ACNGT 5 cut(s) 390, 654, 879, 1094, 1133
HpyCH4IV ACGT 1 cut(s) 1292
HpyF3I CTNAG 5 cut(s) 240, 717, 765, 776, 1260
HpySE526I ACGT 1 cut(s) 1292
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 4 cut(s) 341, 440, 616, 827
HspAI GCGC 3 cut(s) 191, 639, 962
Kpn2I TCCGGA 1 cut(s) 43
KspAI GTTAAC 1 cut(s) 564
Kzo9I GATC 4 cut(s) 102, 442, 990, 1122
LguI GCTCTTC 1 cut(s) 657
LmnI GCTCC 4 cut(s) 316, 497, 1001, 1072
Lsp1109I GCAGC 7 cut(s) 205, 283, 733, 1006, 1028, 1202, 1282
LweI GCATC 4 cut(s) 205, 522, 894, 1003
MaeII ACGT 1 cut(s) 1292
MaeIII GTNAC 3 cut(s) 35, 676, 788
MalI GATC 4 cut(s) 104, 444, 992, 1124
MboI GATC 4 cut(s) 102, 442, 990, 1122
MboII GAAGA 7 cut(s) 38, 224, 674, 840, 949, 959, 1351
MfeI CAATTG 1 cut(s) 644
MflI RGATCY 1 cut(s) 442
MlsI TGGCCA 1 cut(s) 632
MluCI AATT 6 cut(s) 137, 201, 328, 644, 870, 1180
MluNI TGGCCA 1 cut(s) 632
MmeI TCCRAC 3 cut(s) 294, 785, 1113
Mox20I TGGCCA 1 cut(s) 632
MroI TCCGGA 1 cut(s) 43
MroXI GAANNNNTTC 1 cut(s) 753
MscI TGGCCA 1 cut(s) 632
MseI TTAA 5 cut(s) 108, 204, 384, 537, 563
MslI CAYNNNNRTG 1 cut(s) 744
Msp20I TGGCCA 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 1019
MspI CCGG 4 cut(s) 44, 70, 816, 891
MspR9I CCNGG 2 cut(s) 417, 1106
MunI CAATTG 1 cut(s) 644
Mva1269I GAATGC 2 cut(s) 910, 1218
MvaI CCWGG 2 cut(s) 417, 1106
NdeI CATATG 1 cut(s) 1173
NdeII GATC 4 cut(s) 102, 442, 990, 1122
NlaIII CATG 4 cut(s) 341, 440, 616, 827
NmuCI GTSAC 1 cut(s) 676
NsbI TGCGCA 1 cut(s) 640
PaeR7I CTCGAG 1 cut(s) 1223
PagI TCATGA 1 cut(s) 612
PciSI GCTCTTC 1 cut(s) 657
PcsI WCGNNNNNNNCGW 1 cut(s) 990
PctI GAATGC 2 cut(s) 910, 1218
PdmI GAANNNNTTC 1 cut(s) 753
PfeI GAWTC 5 cut(s) 59, 257, 341, 585, 754
PkrI GCNGC 7 cut(s) 195, 298, 723, 1018, 1021, 1217, 1272
Ple19I CGATCG 1 cut(s) 993
Psp6I CCWGG 2 cut(s) 415, 1104
PspGI CCWGG 2 cut(s) 415, 1104
PspPI GGNCC 3 cut(s) 334, 893, 1206
PstI CTGCAG 1 cut(s) 1272
PsuI RGATCY 1 cut(s) 442
PvuI CGATCG 1 cut(s) 993
PvuII CAGCTG 1 cut(s) 1019
RsaI GTAC 3 cut(s) 737, 1031, 1096
RsaNI GTAC 3 cut(s) 736, 1030, 1095
RseI CAYNNNNRTG 1 cut(s) 744
SalI GTCGAC 1 cut(s) 1250
SapI GCTCTTC 1 cut(s) 657
SaqAI TTAA 5 cut(s) 108, 204, 384, 537, 563
SatI GCNGC 7 cut(s) 194, 297, 722, 1017, 1020, 1216, 1271
Sau3AI GATC 4 cut(s) 102, 442, 990, 1122
Sau96I GGNCC 3 cut(s) 334, 893, 1206
ScrFI CCNGG 2 cut(s) 417, 1106
SfaNI GCATC 4 cut(s) 205, 522, 894, 1003
SfcI CTRYAG 1 cut(s) 1268
Sfr274I CTCGAG 1 cut(s) 1223
SinI GGWCC 2 cut(s) 334, 1206
SlaI CTCGAG 1 cut(s) 1223
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 1118, 1223
SmoI CTYRAG 2 cut(s) 1118, 1223
Sse9I AATT 6 cut(s) 137, 201, 328, 644, 870, 1180
SsiI CCGC 2 cut(s) 403, 1284
StyD4I CCNGG 2 cut(s) 415, 1104
StyI CCWWGG 1 cut(s) 838
TaaI ACNGT 5 cut(s) 390, 654, 879, 1094, 1133
TaiI ACGT 1 cut(s) 1295
TaqI TCGA 8 cut(s) 96, 657, 924, 989, 1184, 1224, 1251, 1346
TasI AATT 6 cut(s) 137, 201, 328, 644, 870, 1180
TatI WGTACW 1 cut(s) 1094
TfiI GAWTC 5 cut(s) 59, 257, 341, 585, 754
Tru1I TTAA 5 cut(s) 108, 204, 384, 537, 563
Tru9I TTAA 5 cut(s) 108, 204, 384, 537, 563
TseFI GTSAC 1 cut(s) 676
TseI GCWGC 7 cut(s) 193, 296, 721, 1016, 1019, 1215, 1270
Tsp45I GTSAC 1 cut(s) 676
TspDTI ATGAA 5 cut(s) 601, 675, 746, 762, 950
TspGWI ACGGA 1 cut(s) 839
VpaK11BI GGWCC 2 cut(s) 334, 1206
XapI RAATTY 1 cut(s) 1180
XcmI CCANNNNNNNNNTGG 1 cut(s) 1241
XhoI CTCGAG 1 cut(s) 1223
XmiI GTMKAC 1 cut(s) 1251
XmnI GAANNNNTTC 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.