Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004327

Physical Location & Seq

Genomic Coordinates Reverse (-)

20353771 .. 20356653

Gene Structure 2883 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g18250.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGCTGGACATCAATCTGTTCAGGGAGGAGAAGGGCAACAACCCCGAAATCATCCGGGAATCTCAACGACGCCGTTTCAAAGGCGTTGAGATCGTCGACGAGGTCATCCAGCTCGACAAAGAATGGCGCCAGCGTCAATTCGAGCTCGAAAGCCTTCGGAAAGAGTTCAACAAGATCAACAAGCGAGTTGCTCAGCTCAGGATTGCGGGAGAGGATGCAACTGAGGTGATAAAGGACACAGAGGACAATAAGAGGTTGGCGGCAGAGAAAGAAGTTGAAGTGCGAGAAGCTTTAACACAGTTGAATTCAAAATTGGAAATCGTTGGAAACCTTGTGCATGATTCAGTTCCCATTAGCAAAGATGAGGAGAATAATGCTGTGGTTAGATCATGGGGTGACAAACGAGTGGAGCCAAAACTTAAAAACCATGTTGAGCTTGTTGAGCTTCTTGGGATCGCAGACTTGAAGAAAGGCGCTGAAGTGGCGGGAGGTAGAGGTTTTTACCTGAAAGGTGCTGGTGTACGCCTTAATCAAGCTCTGATAAACTTCGGTCTTGATTTTCTTGAGAAAAGAGGATATACAGAACTGCAGACCCCATTTTTCATGAGAAAAGATATCATGGGAAAGTGCGCTCAATTAGCCCAATTTGATGAGGAACTTTACAAGGTTACCGGTGAAGGTGATGACAAATATCTGATTGCTACAGCTGAACAGCCACTTTGTGCATATCATCTAGATGATTGGATCCATCCATCCCAGCTACCCTTAAGATATGCTGGATACTCATCCTGTTTCCGTAAAGAAGCTGGTTCACATGGTCGAGATACCTTGGGAATTTTCAGGGTTCATCAGTTCGAGAAAGTTGAACAATTCTGTATTACAAGCCCAAATGGCAATGACTCTTGGGAAATGCATGAGGAAATGATCAAAAACTCCGAGGAATTTTATCAAGCGTTAGGGCTCCCCTATCATATTGTGTCCATTGTTTCTGGTGCTTTGAATGATGCCGCAGCAAAGAAGTATGATCGATGGAAGGATGGTTTCCTGCATCGCAGACATATAGAGAGCTGGTTTCTTGTTCAAACTGTACTGACTACCAGTCAAGAAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

371

Amino Acids

42.63

Weight (kDa)

5.71

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27470
fragaria_vesca	FvH4_3g37770 FvH4_6g05710
malus_domestica	MD04G1206100.v1.1 MD04G1206400.v1.1 MD12G1220200.v1.1
prunus_persica	Prupe.6G327000_v2.0.a1
pyrus_communis	pycom04g18250 pycom12g20570
rosa_chinensis	RchiOBHm_Chr2g0115881 RchiOBHm_Chr3g0454601
rosa_laevigata	RLG00000018221 RLG00000019452 RLG00000025430 RLG00000031813
rosa_multiflora	Rmu_co8405619.1_g000001 Rmu_sc0001792.1_g000036 Rmu_ssc0000197.1_g000016
rosa_roxburghii	Rroxscaffold_1G00065260 Rroxscaffold_6G00424940
rosa_rugosa	Rorug02G0200700 Rorug03G0000500 Rorug04G0455300 Rorug05G0211400
rosa_samantha	Rh2BG268600 Rh2CG264100 Rh3AG060400 Rh3BG062500 Rh3CG061300 Rh3DG062100
rosa_wichuraiana	Rw2G020190 Rw3G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	126
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	4 cut(s)	206, 260, 485, 1008
AclWI	GGATC	3 cut(s)	461, 739, 752
AcsI	RAATTY	3 cut(s)	304, 834, 941
AcuI	CTGAAG	1 cut(s)	498
AcyI	GRCGYC	2 cut(s)	70, 127
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	2 cut(s)	522, 1089
AflII	CTTAAG	1 cut(s)	766
AgeI	ACCGGT	1 cut(s)	671
AgsI	TTSAA	9 cut(s)	79, 169, 278, 304, 309, 466, 866, 1000, 1082
AhdI	GACNNNNNGTC	1 cut(s)	1098
AjuI	GAANNNNNNNTTGG	2 cut(s)	296, 328
Alw21I	GWGCWC	1 cut(s)	147
AlwI	GGATC	3 cut(s)	461, 739, 752
ApeKI	GCWGC	1 cut(s)	1010
ApoI	RAATTY	3 cut(s)	304, 834, 941
AsiGI	ACCGGT	1 cut(s)	671
Asp700I	GAANNNNTTC	2 cut(s)	153, 164
AspLEI	GCGC	3 cut(s)	129, 476, 632
AsuC2I	CCSGG	1 cut(s)	56
AsuHPI	GGTGA	4 cut(s)	238, 407, 686, 692
BamHI	GGATCC	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	126
BanII	GRGCYC	2 cut(s)	147, 963
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	1 cut(s)	1022
BccI	CCATC	4 cut(s)	756, 760, 1023, 1031
BceAI	ACGGC	1 cut(s)	57
BciVI	GTATCC	1 cut(s)	773
BclI	TGATCA	1 cut(s)	924
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	734
BfmI	CTRYAG	2 cut(s)	587, 702
BfoI	RGCGCY	2 cut(s)	130, 477
BfrI	CTTAAG	1 cut(s)	766
BfuI	GTATCC	1 cut(s)	773
BglI	GCCNNNNNGGC	1 cut(s)	891
BisI	GCNGC	3 cut(s)	261, 1008, 1011
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	3 cut(s)	262, 1009, 1012
Bme1390I	CCNGG	1 cut(s)	56
BmeRI	GACNNNNNGTC	1 cut(s)	1098
BmiI	GGNNCC	4 cut(s)	128, 411, 746, 962
BmrFI	CCNGG	1 cut(s)	56
BmsI	GCATC	3 cut(s)	205, 994, 1057
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	584
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	2 cut(s)	70, 127
BsaJI	CCNNGG	2 cut(s)	828, 936
BsaWI	WCCGGW	1 cut(s)	671
Bse118I	RCCGGY	1 cut(s)	671
Bse1I	ACTGG	1 cut(s)	1098
Bse3DI	GCAATG	1 cut(s)	901
Bse8I	GATNNNNATC	1 cut(s)	784
BseCI	ATCGAT	1 cut(s)	1027
BseDI	CCNNGG	2 cut(s)	828, 936
BseGI	GGATG	7 cut(s)	51, 105, 220, 748, 752, 785, 1042
BseJI	GATNNNNATC	1 cut(s)	784
BseMI	GCAATG	1 cut(s)	901
BseMII	CTCAG	3 cut(s)	206, 211, 213
BseNI	ACTGG	1 cut(s)	1098
BseRI	GAGGAG	2 cut(s)	41, 380
BseXI	GCAGC	1 cut(s)	1022
BseYI	CCCAGC	1 cut(s)	756
BshNI	GGYRCC	1 cut(s)	126
BshTI	ACCGGT	1 cut(s)	671
BshVI	ATCGAT	1 cut(s)	1027
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	2 cut(s)	55, 672
Bsp1286I	GDGCHC	2 cut(s)	147, 963
Bsp143I	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	4 cut(s)	206, 260, 485, 1008
BspCNI	CTCAG	3 cut(s)	205, 210, 214
BspDI	ATCGAT	1 cut(s)	1027
BspHI	TCATGA	1 cut(s)	603
BspLI	GGNNCC	4 cut(s)	128, 411, 746, 962
BspMAI	CTGCAG	1 cut(s)	591
BspPI	GGATC	3 cut(s)	461, 739, 752
BspT107I	GGYRCC	1 cut(s)	126
BspTI	CTTAAG	1 cut(s)	766
BsrDI	GCAATG	1 cut(s)	901
BsrFI	RCCGGY	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	1098
BssAI	RCCGGY	1 cut(s)	671
BssECI	CCNNGG	2 cut(s)	828, 936
BssMI	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
BssNI	GRCGYC	2 cut(s)	70, 127
BssT1I	CCWWGG	1 cut(s)	828
Bst4CI	ACNGT	2 cut(s)	300, 1087
BstACI	GRCGYC	2 cut(s)	70, 127
BstAFI	CTTAAG	1 cut(s)	766
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	3 cut(s)	192, 197, 222
BstEII	GGTNACC	1 cut(s)	667
BstF5I	GGATG	7 cut(s)	51, 105, 220, 748, 752, 785, 1042
BstH2I	RGCGCY	2 cut(s)	130, 477
BstHHI	GCGC	3 cut(s)	129, 476, 632
BstKTI	GATC	7 cut(s)	93, 177, 389, 456, 747, 927, 1027
BstMBI	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
BstMWI	GCNNNNNNNGC	4 cut(s)	442, 482, 638, 891
BstPI	GGTNACC	1 cut(s)	667
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	587, 702
BstV1I	GCAGC	1 cut(s)	1022
BstX2I	RGATCY	1 cut(s)	744
BstYI	RGATCY	1 cut(s)	744
Bsu15I	ATCGAT	1 cut(s)	1027
BsuI	GTATCC	1 cut(s)	773
BsuTUI	ATCGAT	1 cut(s)	1027
BtgZI	GCGATG	1 cut(s)	1034
BtsCI	GGATG	7 cut(s)	51, 105, 220, 748, 752, 785, 1042
Cac8I	GCNNGC	1 cut(s)	131
CciI	TCATGA	1 cut(s)	603
CfoI	GCGC	3 cut(s)	129, 476, 632
Cfr10I	RCCGGY	1 cut(s)	671
ClaI	ATCGAT	1 cut(s)	1027
CseI	GACGC	2 cut(s)	78, 122
Csp6I	GTAC	2 cut(s)	521, 1088
CspAI	ACCGGT	1 cut(s)	671
CviAII	CATG	7 cut(s)	338, 390, 428, 604, 619, 815, 914
CviQI	GTAC	2 cut(s)	521, 1088
DdeI	CTNAG	3 cut(s)	192, 197, 222
DinI	GGCGCC	1 cut(s)	128
DpnI	GATC	7 cut(s)	92, 176, 388, 455, 746, 926, 1026
DpnII	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
DraIII	CACNNNGTG	1 cut(s)	722
DriI	GACNNNNNGTC	1 cut(s)	1098
Eam1105I	GACNNNNNGTC	1 cut(s)	1098
Ecl136II	GAGCTC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	828
Eco24I	GRGCYC	2 cut(s)	147, 963
Eco32I	GATATC	1 cut(s)	616
Eco53kI	GAGCTC	1 cut(s)	145
Eco57I	CTGAAG	1 cut(s)	498
Eco91I	GGTNACC	1 cut(s)	667
EcoICRI	GAGCTC	1 cut(s)	145
EcoO65I	GGTNACC	1 cut(s)	667
EcoRI	GAATTC	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	828
EcoT22I	ATGCAT	1 cut(s)	915
EcoT38I	GRGCYC	2 cut(s)	147, 963
EgeI	GGCGCC	1 cut(s)	128
EheI	GGCGCC	1 cut(s)	128
ErhI	CCWWGG	1 cut(s)	828
FaeI	CATG	7 cut(s)	341, 393, 431, 607, 622, 818, 917
FatI	CATG	7 cut(s)	337, 389, 427, 603, 618, 814, 913
FauI	CCCGC	2 cut(s)	199, 478
FbaI	TGATCA	1 cut(s)	924
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	3 cut(s)	261, 1008, 1011
FokI	GGATG	7 cut(s)	38, 92, 227, 735, 739, 772, 1049
FriOI	GRGCYC	2 cut(s)	147, 963
Fsp4HI	GCNGC	3 cut(s)	261, 1008, 1011
FspBI	CTAG	1 cut(s)	734
GlaI	GCGC	3 cut(s)	128, 475, 631
GluI	GCNGC	3 cut(s)	261, 1008, 1011
GsaI	CCCAGC	1 cut(s)	760
HaeII	RGCGCY	2 cut(s)	130, 477
HapII	CCGG	2 cut(s)	55, 672
HgaI	GACGC	2 cut(s)	78, 122
HhaI	GCGC	3 cut(s)	129, 476, 632
Hin1I	GRCGYC	2 cut(s)	70, 127
Hin1II	CATG	7 cut(s)	341, 393, 431, 607, 622, 818, 917
Hin6I	GCGC	3 cut(s)	127, 474, 630
HinP1I	GCGC	3 cut(s)	127, 474, 630
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	1 cut(s)	288
HinfI	GANTC	3 cut(s)	59, 341, 899
HpaII	CCGG	2 cut(s)	55, 672
HphI	GGTGA	4 cut(s)	238, 407, 686, 692
Hpy166II	GTNNAC	3 cut(s)	97, 521, 812
Hpy188I	TCNGA	4 cut(s)	159, 540, 696, 937
Hpy188III	TCNNGA	8 cut(s)	199, 554, 563, 604, 734, 821, 856, 1103
Hpy8I	GTNNAC	3 cut(s)	97, 521, 812
Hpy99I	CGWCG	3 cut(s)	72, 98, 101
HpyAV	CCTTC	4 cut(s)	25, 164, 671, 1027
HpyCH4III	ACNGT	2 cut(s)	300, 1087
HpyCH4V	TGCA	6 cut(s)	218, 337, 589, 725, 913, 1048
HpyF10VI	GCNNNNNNNGC	4 cut(s)	442, 482, 638, 891
HpyF3I	CTNAG	3 cut(s)	192, 197, 222
Hsp92I	GRCGYC	2 cut(s)	70, 127
Hsp92II	CATG	7 cut(s)	341, 393, 431, 607, 622, 818, 917
HspAI	GCGC	3 cut(s)	127, 474, 630
KasI	GGCGCC	1 cut(s)	126
Ksp22I	TGATCA	1 cut(s)	924
Kzo9I	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
LmnI	GCTCC	2 cut(s)	409, 966
Lsp1109I	GCAGC	1 cut(s)	1022
LweI	GCATC	3 cut(s)	205, 994, 1057
MaeI	CTAG	1 cut(s)	734
MaeIII	GTNAC	2 cut(s)	395, 667
MalI	GATC	7 cut(s)	92, 176, 388, 455, 746, 926, 1026
MboI	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
MboII	GAAGA	1 cut(s)	478
MflI	RGATCY	1 cut(s)	744
MhlI	GDGCHC	2 cut(s)	147, 963
MluCI	AATT	8 cut(s)	137, 304, 311, 635, 644, 834, 869, 941
Mly113I	GGCGCC	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	893
MmeI	TCCRAC	1 cut(s)	304
Mph1103I	ATGCAT	1 cut(s)	915
MroXI	GAANNNNTTC	2 cut(s)	153, 164
MseI	TTAA	4 cut(s)	293, 420, 528, 767
MslI	CAYNNNNRTG	1 cut(s)	735
MspA1I	CMGCKG	1 cut(s)	707
MspCI	CTTAAG	1 cut(s)	766
MspI	CCGG	2 cut(s)	55, 672
MspR9I	CCNGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	4 cut(s)	442, 482, 638, 891
NarI	GGCGCC	1 cut(s)	127
NciI	CCSGG	1 cut(s)	56
NdeII	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
NlaIII	CATG	7 cut(s)	341, 393, 431, 607, 622, 818, 917
NlaIV	GGNNCC	4 cut(s)	128, 411, 746, 962
NmuCI	GTSAC	1 cut(s)	395
NsiI	ATGCAT	1 cut(s)	915
PagI	TCATGA	1 cut(s)	603
PdmI	GAANNNNTTC	2 cut(s)	153, 164
PfeI	GAWTC	2 cut(s)	59, 341
PflFI	GACNNNGTC	1 cut(s)	101
PfoI	TCCNGGA	1 cut(s)	54
PinAI	ACCGGT	1 cut(s)	671
PkrI	GCNGC	3 cut(s)	262, 1009, 1012
PleI	GAGTC	1 cut(s)	893
PluTI	GGCGCC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	893
Psp124BI	GAGCTC	1 cut(s)	147
PspEI	GGTNACC	1 cut(s)	667
PspFI	CCCAGC	1 cut(s)	756
PspN4I	GGNNCC	4 cut(s)	128, 411, 746, 962
PstI	CTGCAG	1 cut(s)	591
PsuI	RGATCY	1 cut(s)	744
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	1 cut(s)	707
RsaI	GTAC	2 cut(s)	522, 1089
RsaNI	GTAC	2 cut(s)	521, 1088
RseI	CAYNNNNRTG	1 cut(s)	735
SacI	GAGCTC	1 cut(s)	147
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	4 cut(s)	293, 420, 528, 767
SatI	GCNGC	3 cut(s)	261, 1008, 1011
Sau3AI	GATC	7 cut(s)	90, 174, 386, 453, 744, 924, 1024
SchI	GAGTC	1 cut(s)	893
ScrFI	CCNGG	1 cut(s)	56
SduI	GDGCHC	2 cut(s)	147, 963
SfaNI	GCATC	3 cut(s)	205, 994, 1057
SfcI	CTRYAG	2 cut(s)	587, 702
SfoI	GGCGCC	1 cut(s)	128
SgrDI	CGTCGACG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	735
SmlI	CTYRAG	2 cut(s)	563, 766
SmoI	CTYRAG	2 cut(s)	563, 766
Sse9I	AATT	8 cut(s)	137, 304, 311, 635, 644, 834, 869, 941
SsiI	CCGC	4 cut(s)	206, 260, 485, 1008
SspDI	GGCGCC	1 cut(s)	126
SspMI	CTAG	1 cut(s)	734
SstI	GAGCTC	1 cut(s)	147
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	2 cut(s)	300, 1087
TaqI	TCGA	7 cut(s)	96, 114, 141, 147, 820, 855, 1027
TaqII	GACCGA	1 cut(s)	539
TasI	AATT	8 cut(s)	137, 304, 311, 635, 644, 834, 869, 941
TatI	WGTACW	1 cut(s)	1087
TauI	GCSGC	2 cut(s)	263, 1010
TfiI	GAWTC	2 cut(s)	59, 341
Tru1I	TTAA	4 cut(s)	293, 420, 528, 767
Tru9I	TTAA	4 cut(s)	293, 420, 528, 767
TseFI	GTSAC	1 cut(s)	395
TseI	GCWGC	1 cut(s)	1010
Tsp45I	GTSAC	1 cut(s)	395
TspDTI	ATGAA	2 cut(s)	592, 836
TspGWI	ACGGA	1 cut(s)	785
Tth111I	GACNNNGTC	1 cut(s)	101
Vha464I	CTTAAG	1 cut(s)	766
XapI	RAATTY	3 cut(s)	304, 834, 941
XbaI	TCTAGA	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	96
XmnI	GAANNNNTTC	2 cut(s)	153, 164
XspI	CTAG	1 cut(s)	734
Zsp2I	ATGCAT	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.