Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004327

Physical Location & Seq

Genomic Coordinates Forward (+)

3258605 .. 3262888

Gene Structure 4284 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g05710.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1344 bp

ATGTTGGACATCAATCTCTTCAGAGAAGAGAAGGGCGGCAACCCCGAGATCATCCGAGAGTCTCAGCGCCGTCGATTCAAAAGCGTCGAGATCGTCGACGAGGTCATCCAGCTCGATAAAGAATGGCGTCAACGTCAATTTGAGCTCGATAGTCTCAGGAAGGAGTTTAACAAGATCAACAAGAAGGTTGCTCAGCTCAGGATTTCAGGTCAGGATGCAACCGATGTGATTAAGGACACAGAAGAAAACAAGAAGTTGACCGCAGAAAAAGAAGTTGAAGTGCGTGAGGCTTCAAACGTTGTGAATTCAAAATTGGAAGGCATTGGAAACCTTGTGCATGATAGTGTTCCCATCCATGATGACGAGGCCAATAATGCTGTGGTTAGGTCGTGGGGTGAGAAACGGATGGAGCCAAAACTCAAAAATCACGTTGAGCTTGTTGAGCTACTGGGTATTGCTGACTTGAAGAAAGGTGCTGAAGTAGCAGGAGGTAGAGGTTATTACTTGAAAGGTGCTGGTGTCCGCCTCAATCAAGCTCTGATTAATTTTGGTCTTGATTTCCTTGAGAAAAGGGGATACACGGCATTGCAGACTCCATTTTTTATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAGGAGCTTTATAAGGTAACTGGAGAGGGTGATGACAAATATCTCATTGCTACAGCTGAACAGCCACTTTGTGCATATCATGTGGACGACTGGATTCATCCCTCACAGCTGCCCATAAGATATGCTGGATATTCATCTTGTTTCCGCAAGGAAGCTGGTTCACATGGTCGAGATACCTTGGGAATTTTCAGAGTACATCAGTTTGAAAAAGTTGAACAGTTCTGTATGACAAGCCCAAATGGCCAGGACTCCTGGGAAATGCATGAGGAAATGTTGAAGAACTCTGAGGAATTTTATCAGCAGCTCAAACTTCCTTATCATGTTGTGTCCATCGTTTCTGGTGCTCTGAATGATGCGGCAGCAAAGAAATATGATCTGGAAGCATGGTTTCCTGCATCTAAGACGTACAGAGAGCTCGTCTCATGCTCGAACTGTACAGACTACCAATCAAGAAAGTTAGAAATTCGATTTGGGCAGAAAAAGAGCAATGAGCAGACGAAGCAATACGTTCACTTGTTGAACTCCACCCTTACAGCAACTGAGAGAACCATTTGCTGCATTCTAGAAAATTATCAGAGGGAAGATGGTGTAGAGGTGCCAGAAGTCTTACGAAACTTCATGGGTGGAGTGGCCTTCCTACCTTTCAAGAACAAACCAGCCCCTGAAGTCAAAGGGAAGAAATCAAAGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

448

Amino Acids

51.19

Weight (kDa)

6.42

Isoelectric Point (pI)

37.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seryl_tRNA_N	PF02403	1 - 112	3.9e-25	Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b	PF00587	221 - 408	8.4e-43	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27470
fragaria_vesca	FvH4_3g37770 FvH4_6g05710
malus_domestica	MD04G1206100.v1.1 MD04G1206400.v1.1 MD12G1220200.v1.1
prunus_persica	Prupe.6G327000_v2.0.a1
pyrus_communis	pycom04g18250 pycom12g20570
rosa_chinensis	RchiOBHm_Chr2g0115881 RchiOBHm_Chr3g0454601
rosa_laevigata	RLG00000018221 RLG00000019452 RLG00000025430 RLG00000031813
rosa_multiflora	Rmu_co8405619.1_g000001 Rmu_sc0001792.1_g000036 Rmu_ssc0000197.1_g000016
rosa_roxburghii	Rroxscaffold_1G00065260 Rroxscaffold_6G00424940
rosa_rugosa	Rorug02G0200700 Rorug03G0000500 Rorug04G0455300 Rorug05G0211400
rosa_samantha	Rh2BG268600 Rh2CG264100 Rh3AG060400 Rh3BG062500 Rh3CG061300 Rh3DG062100
rosa_wichuraiana	Rw2G020190 Rw3G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	663
AccB1I	GGYRCC	1 cut(s)	1246
AccI	GTMKAC	1 cut(s)	96
AciI	CCGC	5 cut(s)	36, 261, 523, 796, 1007
AclI	AACGTT	1 cut(s)	297
AcoI	YGGCCR	1 cut(s)	892
AcsI	RAATTY	4 cut(s)	304, 834, 941, 1113
AcuI	CTGAAG	3 cut(s)	4, 498, 1335
AcyI	GRCGYC	1 cut(s)	127
AdeI	CACNNNGTG	1 cut(s)	722
AfaI	GTAC	3 cut(s)	846, 1058, 1087
AjnI	CCWGG	2 cut(s)	894, 902
AjuI	GAANNNNNNNTTGG	4 cut(s)	296, 328, 1104, 1136
Alw21I	GWGCWC	4 cut(s)	147, 634, 997, 1068
Alw26I	GTCTC	3 cut(s)	66, 158, 1075
AlwNI	CAGNNNCTG	2 cut(s)	1190, 1313
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	4 cut(s)	366, 892, 1281, 1338
ApeKI	GCWGC	4 cut(s)	760, 952, 1010, 1206
ApoI	RAATTY	4 cut(s)	304, 834, 941, 1113
AseI	ATTAAT	1 cut(s)	543
AspLEI	GCGC	1 cut(s)	69
AsuHPI	GGTGA	2 cut(s)	407, 692
AvaI	CYCGRG	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	894
BanI	GGYRCC	1 cut(s)	1246
BanII	GRGCYC	2 cut(s)	147, 1068
Bbv12I	GWGCWC	4 cut(s)	147, 634, 997, 1068
BbvI	GCAGC	4 cut(s)	747, 964, 1022, 1193
BccI	CCATC	4 cut(s)	359, 400, 989, 1229
BceAI	ACGGC	2 cut(s)	54, 597
BciT130I	CCWGG	2 cut(s)	896, 904
BciVI	GTATCC	1 cut(s)	569
BcoDI	GTCTC	3 cut(s)	66, 158, 1075
BfaI	CTAG	1 cut(s)	1214
BfmI	CTRYAG	1 cut(s)	702
BfoI	RGCGCY	1 cut(s)	70
BfuI	GTATCC	1 cut(s)	569
BglI	GCCNNNNNGGC	1 cut(s)	891
BisI	GCNGC	6 cut(s)	37, 761, 953, 1008, 1011, 1207
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	6 cut(s)	38, 762, 954, 1009, 1012, 1208
Bme1390I	CCNGG	2 cut(s)	896, 904
BmeT110I	CYCGRG	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	411, 1248
BmrFI	CCNGG	2 cut(s)	896, 904
BmrI	ACTGGG	1 cut(s)	458
BmsI	GCATC	3 cut(s)	205, 994, 1055
BmuI	ACTGGG	1 cut(s)	458
BplI	GAGNNNNNCTC	2 cut(s)	1055, 1087
BpmI	CTGGAG	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	197
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	584
BsaBI	GATNNNNATC	1 cut(s)	784
BsaHI	GRCGYC	1 cut(s)	127
BsaJI	CCNNGG	2 cut(s)	828, 903
Bse1I	ACTGG	3 cut(s)	453, 676, 746
Bse3DI	GCAATG	3 cut(s)	584, 696, 1144
Bse8I	GATNNNNATC	1 cut(s)	784
BseBI	CCWGG	2 cut(s)	896, 904
BseDI	CCNNGG	2 cut(s)	828, 903
BseGI	GGATG	6 cut(s)	51, 105, 220, 351, 411, 748
BseJI	GATNNNNATC	1 cut(s)	784
BseMI	GCAATG	3 cut(s)	584, 696, 1144
BseMII	CTCAG	6 cut(s)	77, 169, 206, 211, 927, 1182
BseNI	ACTGG	3 cut(s)	453, 676, 746
BseRI	GAGGAG	1 cut(s)	668
BseXI	GCAGC	4 cut(s)	747, 964, 1022, 1193
BshFI	GGCC	4 cut(s)	368, 894, 1283, 1340
BshNI	GGYRCC	1 cut(s)	1246
BsiHKAI	GWGCWC	4 cut(s)	147, 634, 997, 1068
BsiHKCI	CYCGRG	1 cut(s)	44
BsmAI	GTCTC	3 cut(s)	66, 158, 1075
BsmBI	CGTCTC	1 cut(s)	1075
BsmI	GAATGC	1 cut(s)	1209
BsnI	GGCC	4 cut(s)	368, 894, 1283, 1340
BsoBI	CYCGRG	1 cut(s)	44
Bsp1286I	GDGCHC	4 cut(s)	147, 634, 997, 1068
Bsp1407I	TGTACA	1 cut(s)	1085
Bsp143I	GATC	4 cut(s)	48, 90, 174, 1024
Bsp1720I	GCTNAGC	1 cut(s)	192
BspACI	CCGC	5 cut(s)	36, 261, 523, 796, 1007
BspANI	GGCC	4 cut(s)	368, 894, 1283, 1340
BspCNI	CTCAG	6 cut(s)	76, 168, 205, 210, 928, 1183
BspLI	GGNNCC	2 cut(s)	411, 1248
BspT107I	GGYRCC	1 cut(s)	1246
BsrDI	GCAATG	3 cut(s)	584, 696, 1144
BsrGI	TGTACA	1 cut(s)	1085
BsrI	ACTGG	3 cut(s)	453, 676, 746
BssECI	CCNNGG	2 cut(s)	828, 903
BssMI	GATC	4 cut(s)	48, 90, 174, 1024
BssNI	GRCGYC	1 cut(s)	127
BssT1I	CCWWGG	1 cut(s)	828
Bst2UI	CCWGG	2 cut(s)	896, 904
Bst4CI	ACNGT	2 cut(s)	870, 1085
Bst6I	CTCTTC	2 cut(s)	21, 23
BstACI	GRCGYC	1 cut(s)	127
BstAPI	GCANNNNNTGC	1 cut(s)	629
BstAUI	TGTACA	1 cut(s)	1085
BstDEI	CTNAG	7 cut(s)	63, 155, 192, 197, 936, 1050, 1191
BstF5I	GGATG	6 cut(s)	51, 105, 220, 351, 411, 748
BstH2I	RGCGCY	1 cut(s)	70
BstHHI	GCGC	1 cut(s)	69
BstKTI	GATC	4 cut(s)	51, 93, 177, 1027
BstMAI	GTCTC	3 cut(s)	66, 158, 1075
BstMBI	GATC	4 cut(s)	48, 90, 174, 1024
BstMWI	GCNNNNNNNGC	7 cut(s)	374, 442, 482, 629, 638, 891, 1150
BstNI	CCWGG	2 cut(s)	896, 904
BstSCI	CCNGG	2 cut(s)	894, 902
BstSFI	CTRYAG	1 cut(s)	702
BstV1I	GCAGC	4 cut(s)	747, 964, 1022, 1193
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	4 cut(s)	368, 894, 1283, 1340
BtsCI	GGATG	6 cut(s)	51, 105, 220, 351, 411, 748
CaiI	CAGNNNCTG	2 cut(s)	1190, 1313
CfoI	GCGC	1 cut(s)	69
CseI	GACGC	2 cut(s)	73, 116
Csp6I	GTAC	3 cut(s)	845, 1057, 1086
CviQI	GTAC	3 cut(s)	845, 1057, 1086
DdeI	CTNAG	7 cut(s)	63, 155, 192, 197, 936, 1050, 1191
DpnI	GATC	4 cut(s)	50, 92, 176, 1026
DpnII	GATC	4 cut(s)	48, 90, 174, 1024
DraIII	CACNNNGTG	1 cut(s)	722
EaeI	YGGCCR	1 cut(s)	892
Eam1104I	CTCTTC	2 cut(s)	21, 23
EarI	CTCTTC	2 cut(s)	21, 23
EciI	GGCGGA	1 cut(s)	512
Ecl136II	GAGCTC	2 cut(s)	145, 1066
Eco130I	CCWWGG	1 cut(s)	828
Eco147I	AGGCCT	1 cut(s)	1340
Eco24I	GRGCYC	2 cut(s)	147, 1068
Eco32I	GATATC	1 cut(s)	616
Eco53kI	GAGCTC	2 cut(s)	145, 1066
Eco57I	CTGAAG	3 cut(s)	4, 498, 1335
Eco88I	CYCGRG	1 cut(s)	44
EcoICRI	GAGCTC	2 cut(s)	145, 1066
EcoRI	GAATTC	1 cut(s)	304
EcoRII	CCWGG	2 cut(s)	894, 902
EcoRV	GATATC	1 cut(s)	616
EcoT14I	CCWWGG	1 cut(s)	828
EcoT22I	ATGCAT	1 cut(s)	915
EcoT38I	GRGCYC	2 cut(s)	147, 1068
ErhI	CCWWGG	1 cut(s)	828
Esp3I	CGTCTC	1 cut(s)	1075
FblI	GTMKAC	1 cut(s)	96
Fnu4HI	GCNGC	6 cut(s)	37, 761, 953, 1008, 1011, 1207
FokI	GGATG	6 cut(s)	38, 92, 227, 338, 418, 735
FriOI	GRGCYC	2 cut(s)	147, 1068
Fsp4HI	GCNGC	6 cut(s)	37, 761, 953, 1008, 1011, 1207
FspBI	CTAG	1 cut(s)	1214
GlaI	GCGC	1 cut(s)	68
GluI	GCNGC	6 cut(s)	37, 761, 953, 1008, 1011, 1207
GsuI	CTGGAG	1 cut(s)	693
HaeII	RGCGCY	1 cut(s)	70
HaeIII	GGCC	4 cut(s)	368, 894, 1283, 1340
HgaI	GACGC	2 cut(s)	73, 116
HhaI	GCGC	1 cut(s)	69
Hin1I	GRCGYC	1 cut(s)	127
Hin6I	GCGC	1 cut(s)	67
HinP1I	GCGC	1 cut(s)	67
HincII	GTYRAC	3 cut(s)	97, 131, 258
HindII	GTYRAC	3 cut(s)	97, 131, 258
HinfI	GANTC	5 cut(s)	59, 75, 592, 745, 899
HphI	GGTGA	2 cut(s)	407, 692
Hpy166II	GTNNAC	6 cut(s)	97, 131, 258, 736, 812, 1162
Hpy188I	TCNGA	7 cut(s)	23, 56, 540, 842, 937, 999, 1227
Hpy8I	GTNNAC	6 cut(s)	97, 131, 258, 736, 812, 1162
Hpy99I	CGWCG	4 cut(s)	75, 89, 98, 101
HpyAV	CCTTC	5 cut(s)	25, 154, 178, 311, 1294
HpyCH4III	ACNGT	2 cut(s)	870, 1085
HpyCH4IV	ACGT	5 cut(s)	133, 297, 429, 1055, 1158
HpyCH4V	TGCA	7 cut(s)	218, 337, 589, 725, 913, 1046, 1209
HpyF10VI	GCNNNNNNNGC	7 cut(s)	374, 442, 482, 629, 638, 891, 1150
HpyF3I	CTNAG	7 cut(s)	63, 155, 192, 197, 936, 1050, 1191
HpySE526I	ACGT	5 cut(s)	133, 297, 429, 1055, 1158
Hsp92I	GRCGYC	1 cut(s)	127
HspAI	GCGC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	48, 90, 174, 1024
LmnI	GCTCC	2 cut(s)	409, 655
Lsp1109I	GCAGC	4 cut(s)	747, 964, 1022, 1193
LweI	GCATC	3 cut(s)	205, 994, 1055
MaeI	CTAG	1 cut(s)	1214
MaeII	ACGT	5 cut(s)	133, 297, 429, 1055, 1158
MaeIII	GTNAC	1 cut(s)	667
MalI	GATC	4 cut(s)	50, 92, 176, 1026
MboI	GATC	4 cut(s)	48, 90, 174, 1024
MboII	GAAGA	7 cut(s)	10, 38, 254, 478, 940, 1244, 1339
MhlI	GDGCHC	4 cut(s)	147, 634, 997, 1068
MlsI	TGGCCA	1 cut(s)	894
MluNI	TGGCCA	1 cut(s)	894
MlyI	GAGTC	3 cut(s)	68, 586, 893
Mox20I	TGGCCA	1 cut(s)	894
Mph1103I	ATGCAT	1 cut(s)	915
MscI	TGGCCA	1 cut(s)	894
MseI	TTAA	3 cut(s)	168, 231, 543
MslI	CAYNNNNRTG	1 cut(s)	342
Msp20I	TGGCCA	1 cut(s)	894
MspA1I	CMGCKG	2 cut(s)	707, 760
MspR9I	CCNGG	2 cut(s)	896, 904
Mva1269I	GAATGC	1 cut(s)	1209
MvaI	CCWGG	2 cut(s)	896, 904
MwoI	GCNNNNNNNGC	7 cut(s)	374, 442, 482, 629, 638, 891, 1150
NdeII	GATC	4 cut(s)	48, 90, 174, 1024
NlaIV	GGNNCC	2 cut(s)	411, 1248
NsiI	ATGCAT	1 cut(s)	915
PceI	AGGCCT	1 cut(s)	1340
PcsI	WCGNNNNNNNCGW	1 cut(s)	93
PctI	GAATGC	1 cut(s)	1209
PfeI	GAWTC	2 cut(s)	75, 745
PflFI	GACNNNGTC	1 cut(s)	101
PkrI	GCNGC	6 cut(s)	38, 762, 954, 1009, 1012, 1208
PleI	GAGTC	3 cut(s)	67, 586, 893
PpsI	GAGTC	3 cut(s)	67, 586, 893
PshBI	ATTAAT	1 cut(s)	543
PsiI	TTATAA	1 cut(s)	663
Psp124BI	GAGCTC	2 cut(s)	147, 1068
Psp1406I	AACGTT	1 cut(s)	297
Psp6I	CCWGG	2 cut(s)	894, 902
PspGI	CCWGG	2 cut(s)	894, 902
PspN4I	GGNNCC	2 cut(s)	411, 1248
PstNI	CAGNNNCTG	2 cut(s)	1190, 1313
PsyI	GACNNNGTC	1 cut(s)	101
PvuII	CAGCTG	2 cut(s)	707, 760
RsaI	GTAC	3 cut(s)	846, 1058, 1087
RsaNI	GTAC	3 cut(s)	845, 1057, 1086
RseI	CAYNNNNRTG	1 cut(s)	342
SacI	GAGCTC	2 cut(s)	147, 1068
SalI	GTCGAC	1 cut(s)	95
SaqAI	TTAA	3 cut(s)	168, 231, 543
SatI	GCNGC	6 cut(s)	37, 761, 953, 1008, 1011, 1207
Sau3AI	GATC	4 cut(s)	48, 90, 174, 1024
SchI	GAGTC	3 cut(s)	68, 586, 893
ScrFI	CCNGG	2 cut(s)	896, 904
SduI	GDGCHC	4 cut(s)	147, 634, 997, 1068
SfaNI	GCATC	3 cut(s)	205, 994, 1055
SfcI	CTRYAG	1 cut(s)	702
SgrDI	CGTCGACG	1 cut(s)	95
SmiMI	CAYNNNNRTG	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	563
SmoI	CTYRAG	1 cut(s)	563
SseBI	AGGCCT	1 cut(s)	1340
SsiI	CCGC	5 cut(s)	36, 261, 523, 796, 1007
SspMI	CTAG	1 cut(s)	1214
SstI	GAGCTC	2 cut(s)	147, 1068
StuI	AGGCCT	1 cut(s)	1340
StyD4I	CCNGG	2 cut(s)	894, 902
StyI	CCWWGG	1 cut(s)	828
TaaI	ACNGT	2 cut(s)	870, 1085
TaiI	ACGT	5 cut(s)	136, 300, 432, 1058, 1161
TaqI	TCGA	8 cut(s)	73, 87, 96, 114, 147, 820, 1079, 1117
TatI	WGTACW	2 cut(s)	844, 1085
TauI	GCSGC	2 cut(s)	39, 1010
TfiI	GAWTC	2 cut(s)	75, 745
Tru1I	TTAA	3 cut(s)	168, 231, 543
Tru9I	TTAA	3 cut(s)	168, 231, 543
TseI	GCWGC	4 cut(s)	760, 952, 1010, 1206
TspDTI	ATGAA	3 cut(s)	737, 774, 1258
TspGWI	ACGGA	1 cut(s)	418
Tth111I	GACNNNGTC	1 cut(s)	101
VspI	ATTAAT	1 cut(s)	543
XapI	RAATTY	4 cut(s)	304, 834, 941, 1113
XbaI	TCTAGA	1 cut(s)	1213
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	96
XspI	CTAG	1 cut(s)	1214
Zsp2I	ATGCAT	1 cut(s)	915

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.