pycom12g20570

Serine--tRNA

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
22036044 .. 22039354
3311 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g20570.7

Sequence Viewer

Length: 1344 bp
ATGCTGGACATCAATCTGTTCAGAGAGGAGAAGGGCCACAACCCCGAAATAATCCGGGAATCTCAACGGCGACGTTTCAAAGGCGTCGAGATCGTCGACGAGGTCATCCAGCTCGACAAAGAATGGCGCCAGCGTCAATTCGAGCTTGAGAGCCTTCGGAAAGAGTTCAACAAGATCAACAAGCGAGTTGCTCAGCTGAGGATTGCAGGAGAGGATGCAACTGAGGTGATTAAGGACACAGAGGAAAATAAAAGGTTGGCAGCAGAGAAAGAAGTTGAAGTGCGAGAAGCTTTAACACAGTTGAATTCAAAACTGGAAATCATTGGAAACCTTGTGCATGATTCGGTTCCCTTTAGCAATGATGAGGAAAATAATGCTGTGATTAGATCATGGGGTGACAAACGAGTGGAGCCAAAACTCAAAAATCATGTTGAACTTGTTGAGCTTCTTGGGATTGCAGACTTGAAGAAAGGCGCTGAAGTGGCAGGAGGTAGAGGTTTTTACCTGAAGGGTGCTGGTGTACGCCTTAATCAAGCTCTGATAAACTTTGGTCTTGATTTTCTTGAGGAAAGGGGATATACAGAACTGCATACCCCATTTTTCATGAGAAAAGATATCATGGGAAAGTGTGCTCAATTAGCACAATTTGATGAGGAACTTTACAAGGTTACCGGTGAAGGTGATGACAAATATCTGATTGCTACATCTGAACAGCCACTTTGTGCATATCATATAGACGATTCGATCCATCCATCCCAGTTACCCTTAAGATATGCGGGATATTCATCTTGTTTTCGTAAAGAAGTTGGTTCACACGGTCGAGATACCTTGGGAATTTTTAGGGTCCATCAGTTTGAGAAAGTTGAACAGTTCTGTATTACAACCCCAAATGGCAATGACTCTTGGGAAATGCACGAGGAAATGATAAAAAACTCTGAGGAATTTTATCAAGCGTTAGGGCTCCCCTATCGTATTGTGTCCATCGTTTCTGGTGCTTTGAATGATGCCGCAGCAAAGAAGTATGATCTGGAAGGATGGTTTCCTGCGTCTCAGACATATAGAGAGCTGGTTTCTTGTTCAAACTGTACGGACTACCAGTCAAGAAAGTTAGAAATTCGATATGGGCAGAAAAAGGGCAACGAGCAGACAAAGCAATATGTTCACTTATTGAACTCAACTCTTACTGCGACAGAGAGAACCATGTGCTGCATTCTCGAGAACTACCAGACCGAAGAGGGTGTAAATGTACCAAAAGTTCTTCAACCTTTCATGGGTGGAAAGGAGTTCCTACCGTTCAAGGAGAAACCGGTCCCTGAAGTCAAAGGGAAGAAATCGAAGGCCTAA

Protein Analysis

448

Amino Acids

51.3

Weight (kDa)

5.85

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 96
AciI CCGC 2 cut(s) 776, 1008
AclWI GGATC 1 cut(s) 739
AcsI RAATTY 4 cut(s) 304, 834, 941, 1113
AcuI CTGAAG 3 cut(s) 498, 527, 1335
AcyI GRCGYC 2 cut(s) 84, 127
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 3 cut(s) 522, 1087, 1248
AfiI CCNNNNNNNGG 1 cut(s) 1271
AflII CTTAAG 1 cut(s) 766
AgeI ACCGGT 2 cut(s) 671, 1306
AhdI GACNNNNNGTC 1 cut(s) 1096
AluBI AGCT 7 cut(s) 112, 145, 196, 290, 445, 536, 1066
AluI AGCT 7 cut(s) 112, 145, 196, 290, 445, 536, 1066
Alw21I GWGCWC 1 cut(s) 634
Alw26I GTCTC 1 cut(s) 1053
AlwI GGATC 1 cut(s) 739
Ama87I CYCGRG 1 cut(s) 1214
AoxI GGCC 2 cut(s) 34, 1338
ApeKI GCWGC 3 cut(s) 260, 1010, 1206
ApoI RAATTY 4 cut(s) 304, 834, 941, 1113
AsiGI ACCGGT 2 cut(s) 671, 1306
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 2 cut(s) 129, 476
AspS9I GGNCC 3 cut(s) 34, 844, 1309
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 238, 407, 686, 692
AvaI CYCGRG 1 cut(s) 1214
AvaII GGWCC 2 cut(s) 844, 1309
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 1 cut(s) 963
BauI CACGAG 1 cut(s) 914
Bbv12I GWGCWC 1 cut(s) 634
BbvCI CCTCAGC 1 cut(s) 197
BbvI GCAGC 3 cut(s) 272, 1022, 1193
BccI CCATC 5 cut(s) 756, 760, 855, 989, 1029
BceAI ACGGC 1 cut(s) 83
BcnI CCSGG 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 1053
BfoI RGCGCY 2 cut(s) 130, 477
BfrI CTTAAG 1 cut(s) 766
BisI GCNGC 4 cut(s) 261, 1008, 1011, 1207
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 4 cut(s) 262, 1009, 1012, 1208
Bme1390I CCNGG 1 cut(s) 56
Bme18I GGWCC 2 cut(s) 844, 1309
BmeRI GACNNNNNGTC 1 cut(s) 1096
BmeT110I CYCGRG 1 cut(s) 1214
BmgT120I GGNCC 3 cut(s) 34, 844, 1309
BmiI GGNNCC 6 cut(s) 128, 348, 411, 845, 962, 1311
BmrFI CCNGG 1 cut(s) 56
BmrI ACTGGG 1 cut(s) 751
BmsI GCATC 2 cut(s) 205, 994
BmuI ACTGGG 1 cut(s) 751
Bpu10I CCTNAGC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 2 cut(s) 167, 584
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 784
BsaHI GRCGYC 2 cut(s) 84, 127
BsaJI CCNNGG 1 cut(s) 828
BsaWI WCCGGW 2 cut(s) 671, 1306
Bsc4I CCNNNNNNNGG 1 cut(s) 1271
Bse118I RCCGGY 2 cut(s) 671, 1306
Bse1I ACTGG 3 cut(s) 318, 757, 1096
Bse3DI GCAATG 2 cut(s) 364, 901
Bse8I GATNNNNATC 1 cut(s) 784
BseDI CCNNGG 1 cut(s) 828
BseGI GGATG 5 cut(s) 105, 220, 748, 752, 1040
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 1 cut(s) 1271
BseMI GCAATG 2 cut(s) 364, 901
BseMII CTCAG 5 cut(s) 188, 206, 213, 927, 1064
BseNI ACTGG 3 cut(s) 318, 757, 1096
BseRI GAGGAG 1 cut(s) 41
BseXI GCAGC 3 cut(s) 272, 1022, 1193
Bsh1285I CGRYCG 1 cut(s) 820
BshFI GGCC 2 cut(s) 36, 1340
BshNI GGYRCC 1 cut(s) 126
BshTI ACCGGT 2 cut(s) 671, 1306
BsiEI CGRYCG 1 cut(s) 820
BsiHKAI GWGCWC 1 cut(s) 634
BsiHKCI CYCGRG 1 cut(s) 1214
BsiSI CCGG 3 cut(s) 55, 672, 1307
BslFI GGGAC 1 cut(s) 1295
BslI CCNNNNNNNGG 1 cut(s) 1271
BsmAI GTCTC 1 cut(s) 1053
BsmBI CGTCTC 1 cut(s) 1053
BsmFI GGGAC 1 cut(s) 1295
BsmI GAATGC 1 cut(s) 1209
BsnI GGCC 2 cut(s) 36, 1340
BsoBI CYCGRG 1 cut(s) 1214
Bsp1286I GDGCHC 2 cut(s) 634, 963
Bsp143I GATC 5 cut(s) 90, 174, 386, 744, 1024
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 2 cut(s) 776, 1008
BspANI GGCC 2 cut(s) 36, 1340
BspCNI CTCAG 5 cut(s) 189, 205, 214, 928, 1063
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 6 cut(s) 128, 348, 411, 845, 962, 1311
BspPI GGATC 1 cut(s) 739
BspT107I GGYRCC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 766
BsrDI GCAATG 2 cut(s) 364, 901
BsrFI RCCGGY 2 cut(s) 671, 1306
BsrI ACTGG 3 cut(s) 318, 757, 1096
BssAI RCCGGY 2 cut(s) 671, 1306
BssECI CCNNGG 1 cut(s) 828
BssMI GATC 5 cut(s) 90, 174, 386, 744, 1024
BssNI GRCGYC 2 cut(s) 84, 127
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 828
Bst2BI CACGAG 1 cut(s) 914
Bst4CI ACNGT 5 cut(s) 300, 818, 870, 1085, 1293
Bst6I CTCTTC 1 cut(s) 1227
BstACI GRCGYC 2 cut(s) 84, 127
BstAFI CTTAAG 1 cut(s) 766
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 5 cut(s) 192, 197, 222, 936, 1050
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 5 cut(s) 105, 220, 748, 752, 1040
BstH2I RGCGCY 2 cut(s) 130, 477
BstHHI GCGC 2 cut(s) 129, 476
BstKTI GATC 5 cut(s) 93, 177, 389, 747, 1027
BstMAI GTCTC 1 cut(s) 1053
BstMBI GATC 5 cut(s) 90, 174, 386, 744, 1024
BstMCI CGRYCG 1 cut(s) 820
BstMWI GCNNNNNNNGC 3 cut(s) 482, 638, 1150
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 54
BstV1I GCAGC 3 cut(s) 272, 1022, 1193
BsuRI GGCC 2 cut(s) 36, 1340
BtsCI GGATG 5 cut(s) 105, 220, 748, 752, 1040
Cac8I GCNNGC 1 cut(s) 131
CciI TCATGA 1 cut(s) 603
CfoI GCGC 2 cut(s) 129, 476
Cfr10I RCCGGY 2 cut(s) 671, 1306
Cfr13I GGNCC 3 cut(s) 34, 844, 1309
CseI GACGC 3 cut(s) 73, 122, 1035
Csp6I GTAC 3 cut(s) 521, 1086, 1247
CspAI ACCGGT 2 cut(s) 671, 1306
CviAII CATG 7 cut(s) 338, 390, 428, 604, 619, 1201, 1270
CviQI GTAC 3 cut(s) 521, 1086, 1247
DdeI CTNAG 5 cut(s) 192, 197, 222, 936, 1050
DinI GGCGCC 1 cut(s) 128
DpnI GATC 5 cut(s) 92, 176, 388, 746, 1026
DpnII GATC 5 cut(s) 90, 174, 386, 744, 1024
DraIII CACNNNGTG 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 1096
Eam1104I CTCTTC 1 cut(s) 1227
Eam1105I GACNNNNNGTC 1 cut(s) 1096
EarI CTCTTC 1 cut(s) 1227
Eco130I CCWWGG 1 cut(s) 828
Eco147I AGGCCT 1 cut(s) 1340
Eco24I GRGCYC 1 cut(s) 963
Eco32I GATATC 1 cut(s) 616
Eco47I GGWCC 2 cut(s) 844, 1309
Eco57I CTGAAG 3 cut(s) 498, 527, 1335
Eco88I CYCGRG 1 cut(s) 1214
Eco91I GGTNACC 1 cut(s) 667
EcoO65I GGTNACC 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 304
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 963
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 828
Esp3I CGTCTC 1 cut(s) 1053
FaeI CATG 7 cut(s) 341, 393, 431, 607, 622, 1204, 1273
FaqI GGGAC 1 cut(s) 1295
FatI CATG 7 cut(s) 337, 389, 427, 603, 618, 1200, 1269
FauI CCCGC 1 cut(s) 769
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 261, 1008, 1011, 1207
FokI GGATG 5 cut(s) 92, 227, 735, 739, 1047
FriOI GRGCYC 1 cut(s) 963
Fsp4HI GCNGC 4 cut(s) 261, 1008, 1011, 1207
GlaI GCGC 2 cut(s) 128, 475
GluI GCNGC 4 cut(s) 261, 1008, 1011, 1207
HaeII RGCGCY 2 cut(s) 130, 477
HaeIII GGCC 2 cut(s) 36, 1340
HapII CCGG 3 cut(s) 55, 672, 1307
HgaI GACGC 3 cut(s) 73, 122, 1035
HhaI GCGC 2 cut(s) 129, 476
Hin1I GRCGYC 2 cut(s) 84, 127
Hin1II CATG 7 cut(s) 341, 393, 431, 607, 622, 1204, 1273
Hin6I GCGC 2 cut(s) 127, 474
HinP1I GCGC 2 cut(s) 127, 474
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 4 cut(s) 59, 341, 740, 899
HpaII CCGG 3 cut(s) 55, 672, 1307
HphI GGTGA 4 cut(s) 238, 407, 686, 692
Hpy166II GTNNAC 4 cut(s) 97, 521, 812, 1162
Hpy188I TCNGA 7 cut(s) 23, 159, 540, 696, 709, 937, 1053
Hpy188III TCNNGA 9 cut(s) 88, 554, 563, 604, 821, 1028, 1101, 1214, 1216
Hpy8I GTNNAC 4 cut(s) 97, 521, 812, 1162
Hpy99I CGWCG 4 cut(s) 75, 89, 98, 101
HpyAV CCTTC 6 cut(s) 25, 164, 502, 671, 1025, 1330
HpyCH4III ACNGT 5 cut(s) 300, 818, 870, 1085, 1293
HpyCH4IV ACGT 1 cut(s) 73
HpyCH4V TGCA 8 cut(s) 206, 218, 337, 458, 589, 725, 913, 1209
HpyF10VI GCNNNNNNNGC 3 cut(s) 482, 638, 1150
HpyF3I CTNAG 5 cut(s) 192, 197, 222, 936, 1050
HpySE526I ACGT 1 cut(s) 73
Hsp92I GRCGYC 2 cut(s) 84, 127
Hsp92II CATG 7 cut(s) 341, 393, 431, 607, 622, 1204, 1273
HspAI GCGC 2 cut(s) 127, 474
KasI GGCGCC 1 cut(s) 126
Kzo9I GATC 5 cut(s) 90, 174, 386, 744, 1024
LmnI GCTCC 2 cut(s) 409, 966
Lsp1109I GCAGC 3 cut(s) 272, 1022, 1193
LweI GCATC 2 cut(s) 205, 994
MaeII ACGT 1 cut(s) 73
MaeIII GTNAC 3 cut(s) 395, 667, 759
MalI GATC 5 cut(s) 92, 176, 388, 746, 1026
MboI GATC 5 cut(s) 90, 174, 386, 744, 1024
MboII GAAGA 4 cut(s) 478, 1244, 1250, 1339
MhlI GDGCHC 2 cut(s) 634, 963
MluCI AATT 7 cut(s) 137, 304, 635, 644, 834, 941, 1113
Mly113I GGCGCC 1 cut(s) 127
MlyI GAGTC 1 cut(s) 893
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 4 cut(s) 231, 293, 528, 767
MspA1I CMGCKG 1 cut(s) 196
MspCI CTTAAG 1 cut(s) 766
MspI CCGG 3 cut(s) 55, 672, 1307
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 1209
MwoI GCNNNNNNNGC 3 cut(s) 482, 638, 1150
NarI GGCGCC 1 cut(s) 127
NciI CCSGG 1 cut(s) 56
NdeII GATC 5 cut(s) 90, 174, 386, 744, 1024
NlaIII CATG 7 cut(s) 341, 393, 431, 607, 622, 1204, 1273
NlaIV GGNNCC 6 cut(s) 128, 348, 411, 845, 962, 1311
NmuCI GTSAC 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 1214
PagI TCATGA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 1340
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1209
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 59, 341, 740
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 54
PinAI ACCGGT 2 cut(s) 671, 1306
PkrI GCNGC 4 cut(s) 262, 1009, 1012, 1208
PleI GAGTC 1 cut(s) 893
PluTI GGCGCC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 893
PspEI GGTNACC 1 cut(s) 667
PspN4I GGNNCC 6 cut(s) 128, 348, 411, 845, 962, 1311
PspPI GGNCC 3 cut(s) 34, 844, 1309
PsrI GAACNNNNNNTAC 2 cut(s) 1239, 1271
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 522, 1087, 1248
RsaNI GTAC 3 cut(s) 521, 1086, 1247
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 4 cut(s) 231, 293, 528, 767
SatI GCNGC 4 cut(s) 261, 1008, 1011, 1207
Sau3AI GATC 5 cut(s) 90, 174, 386, 744, 1024
Sau96I GGNCC 3 cut(s) 34, 844, 1309
SchI GAGTC 1 cut(s) 893
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 634, 963
SfaNI GCATC 2 cut(s) 205, 994
SfoI GGCGCC 1 cut(s) 128
Sfr274I CTCGAG 1 cut(s) 1214
SgrDI CGTCGACG 1 cut(s) 95
SinI GGWCC 2 cut(s) 844, 1309
SlaI CTCGAG 1 cut(s) 1214
SmlI CTYRAG 4 cut(s) 146, 563, 766, 1214
SmoI CTYRAG 4 cut(s) 146, 563, 766, 1214
Sse9I AATT 7 cut(s) 137, 304, 635, 644, 834, 941, 1113
SseBI AGGCCT 1 cut(s) 1340
SsiI CCGC 2 cut(s) 776, 1008
SspDI GGCGCC 1 cut(s) 126
StuI AGGCCT 1 cut(s) 1340
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 5 cut(s) 300, 818, 870, 1085, 1293
TaiI ACGT 1 cut(s) 76
TaqI TCGA 9 cut(s) 87, 96, 114, 141, 743, 820, 1117, 1215, 1334
TaqII GACCGA 1 cut(s) 1244
TasI AATT 7 cut(s) 137, 304, 635, 644, 834, 941, 1113
TauI GCSGC 1 cut(s) 1010
TfiI GAWTC 3 cut(s) 59, 341, 740
Tru1I TTAA 4 cut(s) 231, 293, 528, 767
Tru9I TTAA 4 cut(s) 231, 293, 528, 767
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 3 cut(s) 260, 1010, 1206
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 592, 774, 1258
TspGWI ACGGA 1 cut(s) 1103
Tth111I GACNNNGTC 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 766
VpaK11BI GGWCC 2 cut(s) 844, 1309
XapI RAATTY 4 cut(s) 304, 834, 941, 1113
XhoI CTCGAG 1 cut(s) 1214
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.