RchiOBHm_Chr2g0115881

Serine--tRNA

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
28086460 .. 28088632
2173 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48899

Sequence Viewer

Length: 1410 bp
ATGCTTTGCTTGTTCTCTGCGTTTTTCTCCGGCAAAGTCTTCAACTTTTCATCAATAATGTTGGACATCAATCTATTCAGAGAAGAGAAGGGCAACAACCCACAAATCATTCGCGAATCTCAGAAGCGTCGTTTCAAAAGCGTCAAGATCGTCGACGAGGTCATTCAGCTTGATAAACAATGGCGTCAACGTAAATTCGAGCTCGAGAGTCTCCAGAAAGAGTTCAACAAGATCAACACGATCAACAAGAAAGTTGCTCAGTTCAGGATTTCAGGTCAGGATGCAACCGAGGAGTTTAAGGACACAGATGAAATCAAGAGGTTGATCGCAGAAAAAGAAATTGAAGTTCGAGAGGCTTTAAACCTTTTGAATTCGAAACTGGAAGTCATTGGAAACCTTGTGCATGATAGTGTTCCCTTGCATGATGATGAGGCCAATAATGTTGTGGTTAGGTCGGTGGGTGAGAAACGGTTGGAGCCAAAACTCAAATATCACGTTGAGCTTGTTGAGCTTGTGGGTATTGCTGACTTGAAGAAAGGTGCTCAAGTAGCAGGAGGTAGAGGTTATTACTTGAAAGGTGCTGGCGTCCGCCTCAATCAAGCTCTGATAAATTTTGGTCTTGATTTCCTTGAGAAAAGGGGATACACTGCATTGCAGACTCCATTTTTTATGAGGAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTCGATGAGGAGCTTTATAAGGTTACCGGAGAGGGTGATGACAAATATCTGATTGCTACAGCTGAGCAGCCACTATGTGCATATCATGTGGACGATTGGATTCATCCTTCACAGCTGCCCATAAGATATGCTGGATATTCATCTTGTTTCCGCAAGGAAGCTGGTTCACATGGTCGAGATACCTTGGGAATTTTTAGGGTTCATCAGTTTGAAAAAGTTGAACAGTTTTGTATGACAAGCCCAAATGGCCAGGACTCTTGGGAAATGCTAGAGGAAATGATCAAGAACTCTGAGGAATTTTATCAGCAGCTCAAACTTCCTTATCGTGTTGTGTCCATCGTTTCTGGTGCTTTGAATGATGCGGCAGCAAAGAAGTATGATCTGGAAGGGTGGTTTCCTGCATCTCAGACATACAGGGAGCTCGTCTCATGTTCAAACTGTACAGACTACCAATCAAGAAAATTAGGAATTCGATTTGGGCAGAAAAAGAGCAATGAGCAGACGAAGCAATACGTTCACTTGTTGAACTCCACTCTTACAGCAACTGAGAGAACAATTTGCTGCATTCTTGAAAACTATCAGAGGGAAGATGGTGTTGAGGTACCAGAAGTCTTACGAAACTACATGGGTGGAGTGTCCTTCCTACCATTCAAGAACAAACCAGCCCCTGAAGTCAAAGGGAAGAAATCAAAGGCCTAA

Protein Analysis

469

Amino Acids

53.8

Weight (kDa)

8.19

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seryl_tRNA_N PF02403 20 - 134 1.4e-20 Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b PF00587 243 - 430 8.1e-43 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 729
Acc65I GGTACC 1 cut(s) 1312
AccB1I GGYRCC 1 cut(s) 1312
AccI GTMKAC 1 cut(s) 153
AccII CGCG 1 cut(s) 114
AciI CCGC 3 cut(s) 589, 862, 1073
AcoI YGGCCR 1 cut(s) 958
AcsI RAATTY 6 cut(s) 194, 370, 610, 900, 1007, 1179
AcuI CTGAAG 1 cut(s) 1401
AcyI GRCGYC 2 cut(s) 184, 585
AdeI CACNNNGTG 1 cut(s) 788
AfaI GTAC 2 cut(s) 1153, 1314
AjnI CCWGG 1 cut(s) 960
Alw21I GWGCWC 4 cut(s) 204, 544, 700, 1134
Alw26I GTCTC 2 cut(s) 215, 1141
AlwNI CAGNNNCTG 2 cut(s) 1256, 1379
Ama87I CYCGRG 1 cut(s) 203
AoxI GGCC 3 cut(s) 432, 958, 1404
ApeKI GCWGC 5 cut(s) 778, 826, 1018, 1076, 1272
ApoI RAATTY 6 cut(s) 194, 370, 610, 900, 1007, 1179
Asp700I GAANNNNTTC 1 cut(s) 221
Asp718I GGTACC 1 cut(s) 1312
AsuHPI GGTGA 2 cut(s) 473, 758
AsuII TTCGAA 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 203
BalI TGGCCA 1 cut(s) 960
BanI GGYRCC 1 cut(s) 1312
BanII GRGCYC 2 cut(s) 204, 1134
BbsI GAAGAC 1 cut(s) 31
Bbv12I GWGCWC 4 cut(s) 204, 544, 700, 1134
BbvI GCAGC 5 cut(s) 790, 813, 1030, 1088, 1259
BccI CCATC 2 cut(s) 1055, 1295
BciT130I CCWGG 1 cut(s) 962
BciVI GTATCC 1 cut(s) 635
BclI TGATCA 1 cut(s) 990
BcoDI GTCTC 2 cut(s) 215, 1141
BfaI CTAG 1 cut(s) 980
BfmI CTRYAG 1 cut(s) 768
BfuI GTATCC 1 cut(s) 635
BglI GCCNNNNNGGC 1 cut(s) 957
BisI GCNGC 6 cut(s) 779, 827, 1019, 1074, 1077, 1273
BlpI GCTNAGC 1 cut(s) 774
BlsI GCNGC 6 cut(s) 780, 828, 1020, 1075, 1078, 1274
Bme1390I CCNGG 1 cut(s) 962
BmeT110I CYCGRG 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 477, 1314
BmrFI CCNGG 1 cut(s) 962
BmsI GCATC 3 cut(s) 271, 1060, 1121
BpiI GAAGAC 1 cut(s) 31
BplI GAGNNNNNCTC 2 cut(s) 1121, 1153
BpmI CTGGAG 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 774
Bpu14I TTCGAA 1 cut(s) 374
BpuEI CTTGAG 2 cut(s) 528, 650
BsaBI GATNNNNATC 1 cut(s) 850
BsaHI GRCGYC 2 cut(s) 184, 585
BsaJI CCNNGG 2 cut(s) 288, 894
BsaWI WCCGGW 1 cut(s) 737
Bse1I ACTGG 1 cut(s) 384
Bse3DI GCAATG 2 cut(s) 650, 1210
Bse8I GATNNNNATC 1 cut(s) 850
BseBI CCWGG 1 cut(s) 962
BseDI CCNNGG 2 cut(s) 288, 894
BseGI GGATG 2 cut(s) 286, 814
BseJI GATNNNNATC 1 cut(s) 850
BseMI GCAATG 2 cut(s) 650, 1210
BseMII CTCAG 6 cut(s) 134, 272, 765, 993, 1130, 1248
BseNI ACTGG 1 cut(s) 384
BseRI GAGGAG 2 cut(s) 305, 734
BseXI GCAGC 5 cut(s) 790, 813, 1030, 1088, 1259
Bsh1236I CGCG 1 cut(s) 114
BshFI GGCC 3 cut(s) 434, 960, 1406
BshNI GGYRCC 1 cut(s) 1312
BsiHKAI GWGCWC 4 cut(s) 204, 544, 700, 1134
BsiHKCI CYCGRG 1 cut(s) 203
BsiSI CCGG 2 cut(s) 30, 738
BsmAI GTCTC 2 cut(s) 215, 1141
BsmBI CGTCTC 1 cut(s) 1141
BsmI GAATGC 1 cut(s) 1275
BsnI GGCC 3 cut(s) 434, 960, 1406
BsoBI CYCGRG 1 cut(s) 203
Bsp119I TTCGAA 1 cut(s) 374
Bsp1286I GDGCHC 4 cut(s) 204, 544, 700, 1134
Bsp1407I TGTACA 1 cut(s) 1151
Bsp143I GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
Bsp1720I GCTNAGC 1 cut(s) 774
Bsp68I TCGCGA 1 cut(s) 114
BspACI CCGC 3 cut(s) 589, 862, 1073
BspANI GGCC 3 cut(s) 434, 960, 1406
BspCNI CTCAG 6 cut(s) 133, 271, 766, 994, 1129, 1249
BspFNI CGCG 1 cut(s) 114
BspLI GGNNCC 2 cut(s) 477, 1314
BspT104I TTCGAA 1 cut(s) 374
BspT107I GGYRCC 1 cut(s) 1312
BsrDI GCAATG 2 cut(s) 650, 1210
BsrGI TGTACA 1 cut(s) 1151
BsrI ACTGG 1 cut(s) 384
BssECI CCNNGG 2 cut(s) 288, 894
BssMI GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
BssNI GRCGYC 2 cut(s) 184, 585
BssT1I CCWWGG 1 cut(s) 894
Bst2UI CCWGG 1 cut(s) 962
Bst4CI ACNGT 3 cut(s) 471, 936, 1151
Bst6I CTCTTC 1 cut(s) 78
BstACI GRCGYC 2 cut(s) 184, 585
BstAPI GCANNNNNTGC 1 cut(s) 695
BstAUI TGTACA 1 cut(s) 1151
BstBI TTCGAA 1 cut(s) 374
BstC8I GCNNGC 1 cut(s) 583
BstDEI CTNAG 6 cut(s) 120, 258, 774, 1002, 1116, 1257
BstEII GGTNACC 1 cut(s) 733
BstF5I GGATG 2 cut(s) 286, 814
BstFNI CGCG 1 cut(s) 114
BstKTI GATC 6 cut(s) 150, 234, 243, 327, 993, 1093
BstMAI GTCTC 2 cut(s) 215, 1141
BstMBI GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
BstMWI GCNNNNNNNGC 6 cut(s) 508, 548, 695, 704, 957, 1216
BstNI CCWGG 1 cut(s) 962
BstPI GGTNACC 1 cut(s) 733
BstSCI CCNGG 1 cut(s) 960
BstSFI CTRYAG 1 cut(s) 768
BstUI CGCG 1 cut(s) 114
BstV1I GCAGC 5 cut(s) 790, 813, 1030, 1088, 1259
BstV2I GAAGAC 1 cut(s) 31
BsuI GTATCC 1 cut(s) 635
BsuRI GGCC 3 cut(s) 434, 960, 1406
BtsCI GGATG 2 cut(s) 286, 814
BtsI GCAGTG 1 cut(s) 645
BtsIMutI CAGTG 1 cut(s) 645
BtuMI TCGCGA 1 cut(s) 114
Cac8I GCNNGC 1 cut(s) 583
CaiI CAGNNNCTG 2 cut(s) 1256, 1379
CseI GACGC 4 cut(s) 116, 130, 173, 574
Csp6I GTAC 2 cut(s) 1152, 1313
CviAII CATG 7 cut(s) 404, 422, 685, 797, 881, 1140, 1336
CviQI GTAC 2 cut(s) 1152, 1313
DdeI CTNAG 6 cut(s) 120, 258, 774, 1002, 1116, 1257
DpnI GATC 6 cut(s) 149, 233, 242, 326, 992, 1092
DpnII GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
DraI TTTAAA 1 cut(s) 360
DraIII CACNNNGTG 1 cut(s) 788
EaeI YGGCCR 1 cut(s) 958
Eam1104I CTCTTC 1 cut(s) 78
EarI CTCTTC 1 cut(s) 78
EciI GGCGGA 1 cut(s) 578
Ecl136II GAGCTC 2 cut(s) 202, 1132
Eco130I CCWWGG 1 cut(s) 894
Eco147I AGGCCT 1 cut(s) 1406
Eco24I GRGCYC 2 cut(s) 204, 1134
Eco32I GATATC 1 cut(s) 682
Eco53kI GAGCTC 2 cut(s) 202, 1132
Eco57I CTGAAG 1 cut(s) 1401
Eco88I CYCGRG 1 cut(s) 203
Eco91I GGTNACC 1 cut(s) 733
EcoICRI GAGCTC 2 cut(s) 202, 1132
EcoO65I GGTNACC 1 cut(s) 733
EcoRI GAATTC 2 cut(s) 370, 1179
EcoRII CCWGG 1 cut(s) 960
EcoRV GATATC 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 894
EcoT38I GRGCYC 2 cut(s) 204, 1134
ErhI CCWWGG 1 cut(s) 894
Esp3I CGTCTC 1 cut(s) 1141
FaeI CATG 7 cut(s) 407, 425, 688, 800, 884, 1143, 1339
FatI CATG 7 cut(s) 403, 421, 684, 796, 880, 1139, 1335
FbaI TGATCA 1 cut(s) 990
FblI GTMKAC 1 cut(s) 153
Fnu4HI GCNGC 6 cut(s) 779, 827, 1019, 1074, 1077, 1273
FokI GGATG 2 cut(s) 293, 801
FriOI GRGCYC 2 cut(s) 204, 1134
Fsp4HI GCNGC 6 cut(s) 779, 827, 1019, 1074, 1077, 1273
FspBI CTAG 1 cut(s) 980
GluI GCNGC 6 cut(s) 779, 827, 1019, 1074, 1077, 1273
GsuI CTGGAG 1 cut(s) 197
HaeIII GGCC 3 cut(s) 434, 960, 1406
HapII CCGG 2 cut(s) 30, 738
HgaI GACGC 4 cut(s) 116, 130, 173, 574
Hin1I GRCGYC 2 cut(s) 184, 585
Hin1II CATG 7 cut(s) 407, 425, 688, 800, 884, 1143, 1339
HincII GTYRAC 2 cut(s) 154, 188
HindII GTYRAC 2 cut(s) 154, 188
HinfI GANTC 5 cut(s) 116, 208, 658, 811, 965
HpaII CCGG 2 cut(s) 30, 738
HphI GGTGA 2 cut(s) 473, 758
Hpy166II GTNNAC 5 cut(s) 154, 188, 802, 878, 1228
Hpy188I TCNGA 7 cut(s) 80, 123, 606, 762, 1003, 1119, 1293
Hpy8I GTNNAC 5 cut(s) 154, 188, 802, 878, 1228
Hpy99I CGWCG 3 cut(s) 132, 155, 158
HpyAV CCTTC 4 cut(s) 82, 828, 1091, 1360
HpyCH4III ACNGT 3 cut(s) 471, 936, 1151
HpyCH4IV ACGT 3 cut(s) 190, 495, 1224
HpyCH4V TGCA 8 cut(s) 284, 403, 421, 650, 655, 791, 1112, 1275
HpyF10VI GCNNNNNNNGC 6 cut(s) 508, 548, 695, 704, 957, 1216
HpyF3I CTNAG 6 cut(s) 120, 258, 774, 1002, 1116, 1257
HpySE526I ACGT 3 cut(s) 190, 495, 1224
Hsp92I GRCGYC 2 cut(s) 184, 585
Hsp92II CATG 7 cut(s) 407, 425, 688, 800, 884, 1143, 1339
KpnI GGTACC 1 cut(s) 1316
Ksp22I TGATCA 1 cut(s) 990
Kzo9I GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
LmnI GCTCC 3 cut(s) 475, 721, 1129
Lsp1109I GCAGC 5 cut(s) 790, 813, 1030, 1088, 1259
LweI GCATC 3 cut(s) 271, 1060, 1121
MaeI CTAG 1 cut(s) 980
MaeII ACGT 3 cut(s) 190, 495, 1224
MaeIII GTNAC 1 cut(s) 733
MalI GATC 6 cut(s) 149, 233, 242, 326, 992, 1092
MboI GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
MboII GAAGA 5 cut(s) 31, 95, 544, 1310, 1405
MhlI GDGCHC 4 cut(s) 204, 544, 700, 1134
MlsI TGGCCA 1 cut(s) 960
MluNI TGGCCA 1 cut(s) 960
MlyI GAGTC 3 cut(s) 217, 652, 959
MmeI TCCRAC 2 cut(s) 42, 453
Mox20I TGGCCA 1 cut(s) 960
MroXI GAANNNNTTC 1 cut(s) 221
MscI TGGCCA 1 cut(s) 960
MseI TTAA 2 cut(s) 297, 359
MslI CAYNNNNRTG 2 cut(s) 408, 426
Msp20I TGGCCA 1 cut(s) 960
MspA1I CMGCKG 2 cut(s) 773, 826
MspI CCGG 2 cut(s) 30, 738
MspR9I CCNGG 1 cut(s) 962
Mva1269I GAATGC 1 cut(s) 1275
MvaI CCWGG 1 cut(s) 962
MvnI CGCG 1 cut(s) 114
MwoI GCNNNNNNNGC 6 cut(s) 508, 548, 695, 704, 957, 1216
NdeII GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
NlaIII CATG 7 cut(s) 407, 425, 688, 800, 884, 1143, 1339
NlaIV GGNNCC 2 cut(s) 477, 1314
NruI TCGCGA 1 cut(s) 114
NspV TTCGAA 1 cut(s) 374
PaeR7I CTCGAG 1 cut(s) 203
PceI AGGCCT 1 cut(s) 1406
PctI GAATGC 1 cut(s) 1275
PdmI GAANNNNTTC 1 cut(s) 221
PfeI GAWTC 2 cut(s) 116, 811
PflFI GACNNNGTC 1 cut(s) 158
PkrI GCNGC 6 cut(s) 780, 828, 1020, 1075, 1078, 1274
PleI GAGTC 3 cut(s) 216, 652, 959
PpsI GAGTC 3 cut(s) 216, 652, 959
PsiI TTATAA 1 cut(s) 729
Psp124BI GAGCTC 2 cut(s) 204, 1134
Psp6I CCWGG 1 cut(s) 960
PspEI GGTNACC 1 cut(s) 733
PspGI CCWGG 1 cut(s) 960
PspN4I GGNNCC 2 cut(s) 477, 1314
PstNI CAGNNNCTG 2 cut(s) 1256, 1379
PsyI GACNNNGTC 1 cut(s) 158
PvuII CAGCTG 2 cut(s) 773, 826
RruI TCGCGA 1 cut(s) 114
RsaI GTAC 2 cut(s) 1153, 1314
RsaNI GTAC 2 cut(s) 1152, 1313
RseI CAYNNNNRTG 2 cut(s) 408, 426
SacI GAGCTC 2 cut(s) 204, 1134
SalI GTCGAC 1 cut(s) 152
SaqAI TTAA 2 cut(s) 297, 359
SatI GCNGC 6 cut(s) 779, 827, 1019, 1074, 1077, 1273
Sau3AI GATC 6 cut(s) 147, 231, 240, 324, 990, 1090
SchI GAGTC 3 cut(s) 217, 652, 959
ScrFI CCNGG 1 cut(s) 962
SduI GDGCHC 4 cut(s) 204, 544, 700, 1134
SfaNI GCATC 3 cut(s) 271, 1060, 1121
SfcI CTRYAG 1 cut(s) 768
Sfr274I CTCGAG 1 cut(s) 203
SfuI TTCGAA 1 cut(s) 374
SgrDI CGTCGACG 1 cut(s) 152
SlaI CTCGAG 1 cut(s) 203
SmiMI CAYNNNNRTG 2 cut(s) 408, 426
SmlI CTYRAG 3 cut(s) 203, 543, 629
SmoI CTYRAG 3 cut(s) 203, 543, 629
SseBI AGGCCT 1 cut(s) 1406
SsiI CCGC 3 cut(s) 589, 862, 1073
SspMI CTAG 1 cut(s) 980
SstI GAGCTC 2 cut(s) 204, 1134
StuI AGGCCT 1 cut(s) 1406
StyD4I CCNGG 1 cut(s) 960
StyI CCWWGG 1 cut(s) 894
TaaI ACNGT 3 cut(s) 471, 936, 1151
TaiI ACGT 3 cut(s) 193, 498, 1227
TaqI TCGA 8 cut(s) 153, 198, 204, 349, 374, 714, 886, 1183
TatI WGTACW 1 cut(s) 1151
TauI GCSGC 1 cut(s) 1076
TfiI GAWTC 2 cut(s) 116, 811
Tru1I TTAA 2 cut(s) 297, 359
Tru9I TTAA 2 cut(s) 297, 359
TscAI CASTG 1 cut(s) 652
TseI GCWGC 5 cut(s) 778, 826, 1018, 1076, 1272
TspDTI ATGAA 5 cut(s) 39, 324, 803, 840, 902
TspRI CASTG 1 cut(s) 652
Tth111I GACNNNGTC 1 cut(s) 158
XapI RAATTY 6 cut(s) 194, 370, 610, 900, 1007, 1179
XcmI CCANNNNNNNNNTGG 1 cut(s) 442
XhoI CTCGAG 1 cut(s) 203
XmiI GTMKAC 1 cut(s) 153
XmnI GAANNNNTTC 1 cut(s) 221
XspI CTAG 1 cut(s) 980
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.