Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0004327

Physical Location & Seq

Genomic Coordinates Forward (+)

8416984 .. 8418657

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031813

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGTTGGACTTAAATCTGTTTAGAGAAAGGAAGGTGATCGACCTCGACCAAGAATGGTGCCAAAGAAAATTCGAGCTCGTGAATCTCAGGAAAGAGTTCAACCAGACCAACAAGAAAATTGGTCAGCTCAGAATTAAAGAAGGTGAGTTGATTAAAAAGGCAGAGGAAAAGAAGAGGTTGATCGCAGAGAAAGAAGCCGAAGTTCAAGAAGCTTTAGCACAACTGAATTCAAGCGGGAACCTTGTCCATGATTCAGTTCCAGTCAGCGAAGATGAGGCAAACAATGAAGTGGTTAGATCATGGGGAGAGAACCGGGTGGAGCCAGCACTGAAAAATCATGTCGAGCTTTGTAAGCTTCTTGGGACTGCTGACTTTGAGAAAGGTGCTAAAGTGGCTGGATCCAGAGAACAGCCTCTATGTGCTCATCACAAGGATGGATGGTTCCATCCCTCCCAGCTACCCATAAAATATGCTGGGTTTTCATATTGCTTCCGGACAGAAGCTGGCTCACATGGAAAAGATACGTTGGGGCTTTTTAGGACTCATGAGTTTGCCAAAGTAGAACAATTCTGTATTACCAGCCCAAATGAAAATGACTCTTGGGATATGCATGAGGAGATGATCAGAAACTCAGAGGAGTTCTATGAAGCTCTCAAGATTCCATATCGTGTAGTCAATATTGTTTCTGGTGCTTTGAATGGTGCAGCAGCAAAGAAGTATGACTTAGAAGGTTGGTTTCCTGCATCTCAGACATATAGGGAACTAGTCTCATGTTCAAACTGTACAGACTATCAGTCCAGAAAATTAGAAATTCGATATGGACAGACAGGCAATGAGAAGAAAAAGCAGTACGTACGTTCACATGATGAACTCCACTCTCACTGCAATTGGGAGAACCATGTGCTGCATTCTCGAAAACTACCAAATGAAAGATGGTGTCGAGGTACCAGAAGTTTTACAACAGTACATGCGTGGAAAAACCTTCTTACCTTTCAAAAATTAATAAACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

338

Amino Acids

39.1

Weight (kDa)

7.63

Isoelectric Point (pI)

36.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Seryl_tRNA_N	PF02403	11 - 76	2.4e-06	Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b	PF00587	135 - 284	2.5e-30	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27470
fragaria_vesca	FvH4_3g37770 FvH4_6g05710
malus_domestica	MD04G1206100.v1.1 MD04G1206400.v1.1 MD12G1220200.v1.1
prunus_persica	Prupe.6G327000_v2.0.a1
pyrus_communis	pycom04g18250 pycom12g20570
rosa_chinensis	RchiOBHm_Chr2g0115881 RchiOBHm_Chr3g0454601
rosa_laevigata	RLG00000018221 RLG00000019452 RLG00000025430 RLG00000031813
rosa_multiflora	Rmu_co8405619.1_g000001 Rmu_sc0001792.1_g000036 Rmu_ssc0000197.1_g000016
rosa_roxburghii	Rroxscaffold_1G00065260 Rroxscaffold_6G00424940
rosa_rugosa	Rorug02G0200700 Rorug03G0000500 Rorug04G0455300 Rorug05G0211400
rosa_samantha	Rh2BG268600 Rh2CG264100 Rh3AG060400 Rh3BG062500 Rh3CG061300 Rh3DG062100
rosa_wichuraiana	Rw2G020190 Rw3G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	944
AccB1I	GGYRCC	2 cut(s)	57, 944
AccIII	TCCGGA	1 cut(s)	492
AciI	CCGC	1 cut(s)	234
AclWI	GGATC	2 cut(s)	393, 406
AcsI	RAATTY	3 cut(s)	68, 226, 810
AfaI	GTAC	5 cut(s)	784, 851, 855, 946, 966
AgsI	TTSAA	6 cut(s)	100, 206, 231, 697, 777, 995
AhdI	GACNNNNNGTC	1 cut(s)	793
AhlI	ACTAGT	1 cut(s)	763
AloI	GAACNNNNNNTCC	2 cut(s)	425, 457
AluBI	AGCT	8 cut(s)	76, 127, 212, 346, 355, 457, 503, 650
AluI	AGCT	8 cut(s)	76, 127, 212, 346, 355, 457, 503, 650
Alw21I	GWGCWC	2 cut(s)	78, 424
Alw26I	GTCTC	1 cut(s)	772
AlwI	GGATC	2 cut(s)	393, 406
AlwNI	CAGNNNCTG	1 cut(s)	503
Aor13HI	TCCGGA	1 cut(s)	492
ApeKI	GCWGC	3 cut(s)	704, 707, 904
ApoI	RAATTY	3 cut(s)	68, 226, 810
AseI	ATTAAT	1 cut(s)	1001
Asp700I	GAANNNNTTC	1 cut(s)	95
Asp718I	GGTACC	1 cut(s)	944
AsuC2I	CCSGG	1 cut(s)	314
AsuHPI	GGTGA	2 cut(s)	46, 155
BamHI	GGATCC	1 cut(s)	398
BanI	GGYRCC	2 cut(s)	57, 944
BanII	GRGCYC	1 cut(s)	78
BauI	CACGAG	1 cut(s)	77
Bbv12I	GWGCWC	2 cut(s)	78, 424
BbvI	GCAGC	3 cut(s)	716, 719, 891
BccI	CCATC	4 cut(s)	428, 432, 453, 927
BclI	TGATCA	1 cut(s)	621
BcnI	CCSGG	1 cut(s)	314
BcoDI	GTCTC	1 cut(s)	772
BcuI	ACTAGT	1 cut(s)	763
BfaI	CTAG	1 cut(s)	764
BisI	GCNGC	3 cut(s)	705, 708, 905
BlsI	GCNGC	3 cut(s)	706, 709, 906
Bme1390I	CCNGG	1 cut(s)	314
BmeRI	GACNNNNNGTC	1 cut(s)	793
BmiI	GGNNCC	6 cut(s)	59, 239, 321, 400, 443, 946
BmrFI	CCNGG	1 cut(s)	314
BmsI	GCATC	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	1 cut(s)	314
BsaAI	YACGTR	1 cut(s)	853
BsaWI	WCCGGW	1 cut(s)	492
Bse1I	ACTGG	1 cut(s)	260
Bse3DI	GCAATG	1 cut(s)	838
BseAI	TCCGGA	1 cut(s)	492
BseGI	GGATG	3 cut(s)	439, 443, 445
BseMI	GCAATG	1 cut(s)	838
BseMII	CTCAG	4 cut(s)	100, 142, 645, 761
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	629, 650
BseXI	GCAGC	3 cut(s)	716, 719, 891
BseYI	CCCAGC	2 cut(s)	453, 473
BsgI	GTGCAG	1 cut(s)	723
BshNI	GGYRCC	2 cut(s)	57, 944
BsiHKAI	GWGCWC	2 cut(s)	78, 424
BsiSI	CCGG	2 cut(s)	313, 493
BsiWI	CGTACG	1 cut(s)	853
BslFI	GGGAC	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	772
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	907
Bsp1286I	GDGCHC	2 cut(s)	78, 424
Bsp13I	TCCGGA	1 cut(s)	492
Bsp1407I	TGTACA	1 cut(s)	782
Bsp143I	GATC	5 cut(s)	36, 180, 296, 398, 621
BspACI	CCGC	1 cut(s)	234
BspCNI	CTCAG	4 cut(s)	99, 141, 644, 760
BspEI	TCCGGA	1 cut(s)	492
BspHI	TCATGA	1 cut(s)	544
BspLI	GGNNCC	6 cut(s)	59, 239, 321, 400, 443, 946
BspPI	GGATC	2 cut(s)	393, 406
BspT107I	GGYRCC	2 cut(s)	57, 944
BsrDI	GCAATG	1 cut(s)	838
BsrGI	TGTACA	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	260
BssMI	GATC	5 cut(s)	36, 180, 296, 398, 621
BssSI	CACGAG	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	77
Bst4CI	ACNGT	2 cut(s)	782, 964
Bst6I	CTCTTC	1 cut(s)	167
BstAUI	TGTACA	1 cut(s)	782
BstBAI	YACGTR	1 cut(s)	853
BstC8I	GCNNGC	2 cut(s)	324, 505
BstDEI	CTNAG	5 cut(s)	86, 128, 631, 724, 747
BstF5I	GGATG	3 cut(s)	439, 443, 445
BstKTI	GATC	5 cut(s)	39, 183, 299, 401, 624
BstMAI	GTCTC	1 cut(s)	772
BstMBI	GATC	5 cut(s)	36, 180, 296, 398, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	352, 392
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	1 cut(s)	312
BstSNI	TACGTA	1 cut(s)	853
BstV1I	GCAGC	3 cut(s)	716, 719, 891
BstX2I	RGATCY	1 cut(s)	398
BstYI	RGATCY	1 cut(s)	398
BtsCI	GGATG	3 cut(s)	439, 443, 445
BtsI	GCAGTG	1 cut(s)	880
BtsIMutI	CAGTG	2 cut(s)	326, 880
Cac8I	GCNNGC	2 cut(s)	324, 505
CaiI	CAGNNNCTG	1 cut(s)	503
CciI	TCATGA	1 cut(s)	544
Csp6I	GTAC	5 cut(s)	783, 850, 854, 945, 965
CviQI	GTAC	5 cut(s)	783, 850, 854, 945, 965
DdeI	CTNAG	5 cut(s)	86, 128, 631, 724, 747
DpnI	GATC	5 cut(s)	38, 182, 298, 400, 623
DpnII	GATC	5 cut(s)	36, 180, 296, 398, 621
DriI	GACNNNNNGTC	1 cut(s)	793
Eam1104I	CTCTTC	1 cut(s)	167
Eam1105I	GACNNNNNGTC	1 cut(s)	793
EarI	CTCTTC	1 cut(s)	167
Ecl136II	GAGCTC	1 cut(s)	76
Eco105I	TACGTA	1 cut(s)	853
Eco24I	GRGCYC	1 cut(s)	78
Eco53kI	GAGCTC	1 cut(s)	76
EcoICRI	GAGCTC	1 cut(s)	76
EcoRI	GAATTC	1 cut(s)	226
EcoT22I	ATGCAT	1 cut(s)	612
EcoT38I	GRGCYC	1 cut(s)	78
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	1 cut(s)	376
FauI	CCCGC	1 cut(s)	227
FbaI	TGATCA	1 cut(s)	621
Fnu4HI	GCNGC	3 cut(s)	705, 708, 905
FokI	GGATG	3 cut(s)	432, 446, 450
FriOI	GRGCYC	1 cut(s)	78
Fsp4HI	GCNGC	3 cut(s)	705, 708, 905
FspBI	CTAG	1 cut(s)	764
GluI	GCNGC	3 cut(s)	705, 708, 905
GsaI	CCCAGC	2 cut(s)	457, 477
HapII	CCGG	2 cut(s)	313, 493
HindIII	AAGCTT	2 cut(s)	210, 353
HinfI	GANTC	5 cut(s)	82, 251, 541, 596, 658
HpaII	CCGG	2 cut(s)	313, 493
HphI	GGTGA	2 cut(s)	46, 155
Hpy166II	GTNNAC	1 cut(s)	860
Hpy188I	TCNGA	4 cut(s)	131, 626, 634, 750
Hpy188III	TCNNGA	9 cut(s)	79, 88, 206, 402, 493, 545, 655, 798, 912
Hpy8I	GTNNAC	1 cut(s)	860
HpyAV	CCTTC	4 cut(s)	25, 134, 722, 992
HpyCH4III	ACNGT	2 cut(s)	782, 964
HpyCH4IV	ACGT	3 cut(s)	524, 852, 856
HpyCH4V	TGCA	5 cut(s)	610, 704, 743, 885, 907
HpyF10VI	GCNNNNNNNGC	2 cut(s)	352, 392
HpyF3I	CTNAG	5 cut(s)	86, 128, 631, 724, 747
HpySE526I	ACGT	3 cut(s)	524, 852, 856
Kpn2I	TCCGGA	1 cut(s)	492
KpnI	GGTACC	1 cut(s)	948
Ksp22I	TGATCA	1 cut(s)	621
Kzo9I	GATC	5 cut(s)	36, 180, 296, 398, 621
LmnI	GCTCC	1 cut(s)	319
Lsp1109I	GCAGC	3 cut(s)	716, 719, 891
LweI	GCATC	1 cut(s)	752
MaeI	CTAG	1 cut(s)	764
MaeII	ACGT	3 cut(s)	524, 852, 856
MalI	GATC	5 cut(s)	38, 182, 298, 400, 623
MboI	GATC	5 cut(s)	36, 180, 296, 398, 621
MboII	GAAGA	3 cut(s)	184, 281, 850
MfeI	CAATTG	1 cut(s)	886
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	2 cut(s)	78, 424
MluCI	AATT	9 cut(s)	68, 117, 132, 226, 566, 803, 810, 886, 998
MlyI	GAGTC	2 cut(s)	535, 590
MnlI	CCTC	9 cut(s)	53, 157, 168, 268, 423, 460, 607, 628, 935
Mph1103I	ATGCAT	1 cut(s)	612
MroI	TCCGGA	1 cut(s)	492
MroXI	GAANNNNTTC	1 cut(s)	95
MseI	TTAA	5 cut(s)	11, 135, 153, 1001, 1012
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	2 cut(s)	313, 493
MspR9I	CCNGG	1 cut(s)	314
MunI	CAATTG	1 cut(s)	886
Mva1269I	GAATGC	1 cut(s)	907
MwoI	GCNNNNNNNGC	2 cut(s)	352, 392
NciI	CCSGG	1 cut(s)	314
NdeII	GATC	5 cut(s)	36, 180, 296, 398, 621
NlaIV	GGNNCC	6 cut(s)	59, 239, 321, 400, 443, 946
NsiI	ATGCAT	1 cut(s)	612
NspI	RCATGY	1 cut(s)	971
PagI	TCATGA	1 cut(s)	544
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	3 cut(s)	82, 251, 658
Pfl23II	CGTACG	1 cut(s)	853
PkrI	GCNGC	3 cut(s)	706, 709, 906
PleI	GAGTC	2 cut(s)	535, 590
PpsI	GAGTC	2 cut(s)	535, 590
Ppu21I	YACGTR	1 cut(s)	853
PshBI	ATTAAT	1 cut(s)	1001
Psp124BI	GAGCTC	1 cut(s)	78
PspFI	CCCAGC	2 cut(s)	453, 473
PspLI	CGTACG	1 cut(s)	853
PspN4I	GGNNCC	6 cut(s)	59, 239, 321, 400, 443, 946
PstNI	CAGNNNCTG	1 cut(s)	503
PsuI	RGATCY	1 cut(s)	398
RsaI	GTAC	5 cut(s)	784, 851, 855, 946, 966
RsaNI	GTAC	5 cut(s)	783, 850, 854, 945, 965
RseI	CAYNNNNRTG	1 cut(s)	432
SacI	GAGCTC	1 cut(s)	78
SaqAI	TTAA	5 cut(s)	11, 135, 153, 1001, 1012
SatI	GCNGC	3 cut(s)	705, 708, 905
Sau3AI	GATC	5 cut(s)	36, 180, 296, 398, 621
SchI	GAGTC	2 cut(s)	535, 590
ScrFI	CCNGG	1 cut(s)	314
SduI	GDGCHC	2 cut(s)	78, 424
SfaNI	GCATC	1 cut(s)	752
SmiMI	CAYNNNNRTG	1 cut(s)	432
SmlI	CTYRAG	1 cut(s)	653
SmoI	CTYRAG	1 cut(s)	653
SnaBI	TACGTA	1 cut(s)	853
SpeI	ACTAGT	1 cut(s)	763
Sse9I	AATT	9 cut(s)	68, 117, 132, 226, 566, 803, 810, 886, 998
SsiI	CCGC	1 cut(s)	234
SspI	AATATT	1 cut(s)	679
SspMI	CTAG	1 cut(s)	764
SstI	GAGCTC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	312
TaaI	ACNGT	2 cut(s)	782, 964
TaiI	ACGT	3 cut(s)	527, 855, 859
TaqI	TCGA	7 cut(s)	39, 45, 72, 342, 814, 913, 940
TasI	AATT	9 cut(s)	68, 117, 132, 226, 566, 803, 810, 886, 998
TatI	WGTACW	2 cut(s)	782, 964
TfiI	GAWTC	3 cut(s)	82, 251, 658
Tru1I	TTAA	5 cut(s)	11, 135, 153, 1001, 1012
Tru9I	TTAA	5 cut(s)	11, 135, 153, 1001, 1012
TscAI	CASTG	2 cut(s)	333, 887
TseI	GCWGC	3 cut(s)	704, 707, 904
TspDTI	ATGAA	6 cut(s)	300, 471, 603, 660, 882, 942
TspRI	CASTG	2 cut(s)	333, 887
VspI	ATTAAT	1 cut(s)	1001
XapI	RAATTY	3 cut(s)	68, 226, 810
XceI	RCATGY	1 cut(s)	971
XcmI	CCANNNNNNNNNTGG	1 cut(s)	930
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	1 cut(s)	764
Zsp2I	ATGCAT	1 cut(s)	612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.