Rh2BG268600

Serine--tRNA

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
28921014 .. 28922686
1673 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG268600.1

Sequence Viewer

Length: 1353 bp
ATGTTGGACATCAATCTATTCAGAGAAGAGAAGGGCAACAACCCACAAATCATTCGCGAATCTCAGAAGCGTCGTTTCAAAAGCGTCGAGATCGTCGACGAGGTCATTCAGCTTGATAAACAATGGCGTCAACGTCAATTCGAGCTCGAGAATCTCAAGAAAGAGTTCAACAAGATCAACACGATCAACAAGAAAGTTGCTCAGTTCAGGATTTCAGGTCAGGATGCAACCGAGGTGTTTAAGGACACAGATGAAATCAAGAGGTTGATCGCAGAAAAAGAAATTGAAGTTCGAGAGGCTTTAAACCTTTTGCATTCGAAACTGGAAGTCATTGGAAACCTTGTGCATGATAGTGTTCCCTTGCATGATGATGAGGCCAATAATGTTGTGGTTAGATCGGTGGGTGAGAAACGGTTGGAGCCAAAACTCAAATATCACGTTGAGCTTGTTGAGCTTGTGGGTATTGCTGACTTGAAGAAAGGTGCTCAAGTAGCAGGAGGTAGAGGTTATTACTTGAAAGGTGCTGGCGTCCGCCTCAATCAAGCTCTGATAAATTTTGGTCTTGATTTCCTTGAGAAAAGGGGATACACTGCATTGCAGACTCCATTTTTTATGAGGAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTCGATGAGGAGCTTTATAAGGTTACCGGAGAGGGTGATGACAAATATCTGATTGCTACAGCTGAGCAGCCACTATGTGCATATCATGTGGACAATTGGATTCATCCTTCACAGCTGCCCATAAGATATGCTGGATATTCATCTTGTTTCCGCAAGGAAGCTGGTTCACATGGTCGAGATACCTTGGGAATTTTTAGGGTTCATCAGTTTGAAAAAGTTGAACAGTTTTGTATGACAAGCCCAAATGGCCAGGACTCTTGGGAAATGCTCGAGGAAATGATCAAGAACTCTGAGGAATTTTATCAGCAGCTCAAACTTCCTTATCGTGTTGTGTCCATCGTTTCTGGTGCTTTGAATGATGCGGCAGCAAAGAAGTATGATCTGGAAGGGTGGTTTCCTGCATCTCAGACATACAGGGAGCTCGTCTCATGTTCAAACTGTACAGACTACCAATCAAGAAAATTAGGAATTCGATTTGGGCAGAAAAAGGGCAATGAGCAGACTAAGCAATACGTTCACTTGTTGAACTCCACTCTTACAGCAACTGAGAGAACCATTTGCTGCATTCTTGAAAACTATCAGAGGGAAGATGGTGTTGAGGTACCAGAAGTCTTACGAAACTACATGGGTGGAGTGTCCTTCCTACCATTCAAGAACAAACCAGCCCCTGAAGTCAAAGGGAAGAAATCAAAGGCCTAA

Protein Analysis

450

Amino Acids

51.66

Weight (kDa)

7.97

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seryl_tRNA_N PF02403 1 - 115 1.6e-21 Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b PF00587 224 - 411 6.4e-43 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 672
Acc65I GGTACC 1 cut(s) 1255
AccB1I GGYRCC 1 cut(s) 1255
AccI GTMKAC 1 cut(s) 96
AccII CGCG 1 cut(s) 57
AciI CCGC 3 cut(s) 532, 805, 1016
AcoI YGGCCR 1 cut(s) 901
AcsI RAATTY 4 cut(s) 553, 843, 950, 1122
AcuI CTGAAG 1 cut(s) 1344
AcyI GRCGYC 2 cut(s) 127, 528
AdeI CACNNNGTG 1 cut(s) 731
AfaI GTAC 2 cut(s) 1096, 1257
AjnI CCWGG 1 cut(s) 903
Alw21I GWGCWC 4 cut(s) 147, 487, 643, 1077
Alw26I GTCTC 1 cut(s) 1084
AlwNI CAGNNNCTG 2 cut(s) 1199, 1322
Ama87I CYCGRG 2 cut(s) 146, 923
AoxI GGCC 3 cut(s) 375, 901, 1347
ApeKI GCWGC 5 cut(s) 721, 769, 961, 1019, 1215
ApoI RAATTY 4 cut(s) 553, 843, 950, 1122
Asp700I GAANNNNTTC 1 cut(s) 164
Asp718I GGTACC 1 cut(s) 1255
AsuHPI GGTGA 2 cut(s) 416, 701
AsuII TTCGAA 1 cut(s) 317
AvaI CYCGRG 2 cut(s) 146, 923
BalI TGGCCA 1 cut(s) 903
BanI GGYRCC 1 cut(s) 1255
BanII GRGCYC 2 cut(s) 147, 1077
Bbv12I GWGCWC 4 cut(s) 147, 487, 643, 1077
BbvI GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
BccI CCATC 2 cut(s) 998, 1238
BciT130I CCWGG 1 cut(s) 905
BciVI GTATCC 1 cut(s) 578
BclI TGATCA 1 cut(s) 933
BcoDI GTCTC 1 cut(s) 1084
BfmI CTRYAG 1 cut(s) 711
BfuI GTATCC 1 cut(s) 578
BglI GCCNNNNNGGC 1 cut(s) 900
BisI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
BlpI GCTNAGC 1 cut(s) 717
BlsI GCNGC 6 cut(s) 723, 771, 963, 1018, 1021, 1217
Bme1390I CCNGG 1 cut(s) 905
BmeT110I CYCGRG 2 cut(s) 146, 923
BmiI GGNNCC 2 cut(s) 420, 1257
BmrFI CCNGG 1 cut(s) 905
BmsI GCATC 3 cut(s) 214, 1003, 1064
BplI GAGNNNNNCTC 2 cut(s) 1064, 1096
Bpu1102I GCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 317
BpuEI CTTGAG 3 cut(s) 140, 471, 593
BsaBI GATNNNNATC 1 cut(s) 793
BsaHI GRCGYC 2 cut(s) 127, 528
BsaJI CCNNGG 2 cut(s) 231, 837
BsaWI WCCGGW 1 cut(s) 680
Bse1I ACTGG 1 cut(s) 327
Bse3DI GCAATG 2 cut(s) 593, 1153
Bse8I GATNNNNATC 1 cut(s) 793
BseBI CCWGG 1 cut(s) 905
BseDI CCNNGG 2 cut(s) 231, 837
BseGI GGATG 2 cut(s) 229, 757
BseJI GATNNNNATC 1 cut(s) 793
BseMI GCAATG 2 cut(s) 593, 1153
BseMII CTCAG 6 cut(s) 77, 215, 708, 936, 1073, 1191
BseNI ACTGG 1 cut(s) 327
BseRI GAGGAG 1 cut(s) 677
BseXI GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
Bsh1236I CGCG 1 cut(s) 57
BshFI GGCC 3 cut(s) 377, 903, 1349
BshNI GGYRCC 1 cut(s) 1255
BsiHKAI GWGCWC 4 cut(s) 147, 487, 643, 1077
BsiHKCI CYCGRG 2 cut(s) 146, 923
BsiSI CCGG 1 cut(s) 681
BsmAI GTCTC 1 cut(s) 1084
BsmBI CGTCTC 1 cut(s) 1084
BsmI GAATGC 2 cut(s) 313, 1218
BsnI GGCC 3 cut(s) 377, 903, 1349
BsoBI CYCGRG 2 cut(s) 146, 923
Bsp119I TTCGAA 1 cut(s) 317
Bsp1286I GDGCHC 4 cut(s) 147, 487, 643, 1077
Bsp1407I TGTACA 1 cut(s) 1094
Bsp143I GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
Bsp1720I GCTNAGC 1 cut(s) 717
Bsp68I TCGCGA 1 cut(s) 57
BspACI CCGC 3 cut(s) 532, 805, 1016
BspANI GGCC 3 cut(s) 377, 903, 1349
BspCNI CTCAG 6 cut(s) 76, 214, 709, 937, 1072, 1192
BspFNI CGCG 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 420, 1257
BspT104I TTCGAA 1 cut(s) 317
BspT107I GGYRCC 1 cut(s) 1255
BsrDI GCAATG 2 cut(s) 593, 1153
BsrGI TGTACA 1 cut(s) 1094
BsrI ACTGG 1 cut(s) 327
BssECI CCNNGG 2 cut(s) 231, 837
BssMI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
BssNI GRCGYC 2 cut(s) 127, 528
BssT1I CCWWGG 1 cut(s) 837
Bst2UI CCWGG 1 cut(s) 905
Bst4CI ACNGT 3 cut(s) 414, 879, 1094
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 2 cut(s) 127, 528
BstAPI GCANNNNNTGC 1 cut(s) 638
BstAUI TGTACA 1 cut(s) 1094
BstBI TTCGAA 1 cut(s) 317
BstC8I GCNNGC 1 cut(s) 526
BstDEI CTNAG 7 cut(s) 63, 201, 717, 945, 1059, 1158, 1200
BstEII GGTNACC 1 cut(s) 676
BstF5I GGATG 2 cut(s) 229, 757
BstFNI CGCG 1 cut(s) 57
BstKTI GATC 7 cut(s) 93, 177, 186, 270, 398, 936, 1036
BstMAI GTCTC 1 cut(s) 1084
BstMBI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
BstMWI GCNNNNNNNGC 6 cut(s) 451, 491, 638, 647, 900, 1159
BstNI CCWGG 1 cut(s) 905
BstPI GGTNACC 1 cut(s) 676
BstSCI CCNGG 1 cut(s) 903
BstSFI CTRYAG 1 cut(s) 711
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
BsuI GTATCC 1 cut(s) 578
BsuRI GGCC 3 cut(s) 377, 903, 1349
BtsCI GGATG 2 cut(s) 229, 757
BtsI GCAGTG 1 cut(s) 588
BtsIMutI CAGTG 1 cut(s) 588
BtuMI TCGCGA 1 cut(s) 57
Cac8I GCNNGC 1 cut(s) 526
CaiI CAGNNNCTG 2 cut(s) 1199, 1322
CseI GACGC 4 cut(s) 59, 73, 116, 517
Csp6I GTAC 2 cut(s) 1095, 1256
CviAII CATG 7 cut(s) 347, 365, 628, 740, 824, 1083, 1279
CviQI GTAC 2 cut(s) 1095, 1256
DdeI CTNAG 7 cut(s) 63, 201, 717, 945, 1059, 1158, 1200
DpnI GATC 7 cut(s) 92, 176, 185, 269, 397, 935, 1035
DpnII GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
DraI TTTAAA 1 cut(s) 303
DraIII CACNNNGTG 1 cut(s) 731
EaeI YGGCCR 1 cut(s) 901
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 521
Ecl136II GAGCTC 2 cut(s) 145, 1075
Eco130I CCWWGG 1 cut(s) 837
Eco147I AGGCCT 1 cut(s) 1349
Eco24I GRGCYC 2 cut(s) 147, 1077
Eco32I GATATC 1 cut(s) 625
Eco53kI GAGCTC 2 cut(s) 145, 1075
Eco57I CTGAAG 1 cut(s) 1344
Eco88I CYCGRG 2 cut(s) 146, 923
Eco91I GGTNACC 1 cut(s) 676
EcoICRI GAGCTC 2 cut(s) 145, 1075
EcoO65I GGTNACC 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 1122
EcoRII CCWGG 1 cut(s) 903
EcoRV GATATC 1 cut(s) 625
EcoT14I CCWWGG 1 cut(s) 837
EcoT38I GRGCYC 2 cut(s) 147, 1077
ErhI CCWWGG 1 cut(s) 837
Esp3I CGTCTC 1 cut(s) 1084
FaeI CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
FatI CATG 7 cut(s) 346, 364, 627, 739, 823, 1082, 1278
FbaI TGATCA 1 cut(s) 933
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
FokI GGATG 2 cut(s) 236, 744
FriOI GRGCYC 2 cut(s) 147, 1077
Fsp4HI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
GluI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
HaeIII GGCC 3 cut(s) 377, 903, 1349
HapII CCGG 1 cut(s) 681
HgaI GACGC 4 cut(s) 59, 73, 116, 517
Hin1I GRCGYC 2 cut(s) 127, 528
Hin1II CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
HincII GTYRAC 2 cut(s) 97, 131
HindII GTYRAC 2 cut(s) 97, 131
HinfI GANTC 5 cut(s) 59, 151, 601, 754, 908
HpaII CCGG 1 cut(s) 681
HphI GGTGA 2 cut(s) 416, 701
Hpy166II GTNNAC 5 cut(s) 97, 131, 745, 821, 1171
Hpy188I TCNGA 7 cut(s) 23, 66, 549, 705, 946, 1062, 1236
Hpy8I GTNNAC 5 cut(s) 97, 131, 745, 821, 1171
Hpy99I CGWCG 4 cut(s) 75, 89, 98, 101
HpyAV CCTTC 4 cut(s) 25, 771, 1034, 1303
HpyCH4III ACNGT 3 cut(s) 414, 879, 1094
HpyCH4IV ACGT 3 cut(s) 133, 438, 1167
HpyCH4V TGCA 9 cut(s) 227, 313, 346, 364, 593, 598, 734, 1055, 1218
HpyF10VI GCNNNNNNNGC 6 cut(s) 451, 491, 638, 647, 900, 1159
HpyF3I CTNAG 7 cut(s) 63, 201, 717, 945, 1059, 1158, 1200
HpySE526I ACGT 3 cut(s) 133, 438, 1167
Hsp92I GRCGYC 2 cut(s) 127, 528
Hsp92II CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
KpnI GGTACC 1 cut(s) 1259
Ksp22I TGATCA 1 cut(s) 933
Kzo9I GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
LmnI GCTCC 3 cut(s) 418, 664, 1072
Lsp1109I GCAGC 5 cut(s) 733, 756, 973, 1031, 1202
LweI GCATC 3 cut(s) 214, 1003, 1064
MaeII ACGT 3 cut(s) 133, 438, 1167
MaeIII GTNAC 1 cut(s) 676
MalI GATC 7 cut(s) 92, 176, 185, 269, 397, 935, 1035
MboI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
MboII GAAGA 4 cut(s) 38, 487, 1253, 1348
MfeI CAATTG 1 cut(s) 748
MhlI GDGCHC 4 cut(s) 147, 487, 643, 1077
MlsI TGGCCA 1 cut(s) 903
MluNI TGGCCA 1 cut(s) 903
MlyI GAGTC 2 cut(s) 595, 902
MmeI TCCRAC 1 cut(s) 396
Mox20I TGGCCA 1 cut(s) 903
MroXI GAANNNNTTC 1 cut(s) 164
MscI TGGCCA 1 cut(s) 903
MseI TTAA 2 cut(s) 240, 302
MslI CAYNNNNRTG 2 cut(s) 351, 369
Msp20I TGGCCA 1 cut(s) 903
MspA1I CMGCKG 2 cut(s) 716, 769
MspI CCGG 1 cut(s) 681
MspR9I CCNGG 1 cut(s) 905
MunI CAATTG 1 cut(s) 748
Mva1269I GAATGC 2 cut(s) 313, 1218
MvaI CCWGG 1 cut(s) 905
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 6 cut(s) 451, 491, 638, 647, 900, 1159
NdeII GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
NlaIII CATG 7 cut(s) 350, 368, 631, 743, 827, 1086, 1282
NlaIV GGNNCC 2 cut(s) 420, 1257
NruI TCGCGA 1 cut(s) 57
NspV TTCGAA 1 cut(s) 317
PaeR7I CTCGAG 2 cut(s) 146, 923
PceI AGGCCT 1 cut(s) 1349
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 2 cut(s) 313, 1218
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 59, 151, 754
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 6 cut(s) 723, 771, 963, 1018, 1021, 1217
PleI GAGTC 2 cut(s) 595, 902
PpsI GAGTC 2 cut(s) 595, 902
PsiI TTATAA 1 cut(s) 672
Psp124BI GAGCTC 2 cut(s) 147, 1077
Psp6I CCWGG 1 cut(s) 903
PspEI GGTNACC 1 cut(s) 676
PspGI CCWGG 1 cut(s) 903
PspN4I GGNNCC 2 cut(s) 420, 1257
PspXI VCTCGAGB 1 cut(s) 923
PstNI CAGNNNCTG 2 cut(s) 1199, 1322
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 2 cut(s) 716, 769
RruI TCGCGA 1 cut(s) 57
RsaI GTAC 2 cut(s) 1096, 1257
RsaNI GTAC 2 cut(s) 1095, 1256
RseI CAYNNNNRTG 2 cut(s) 351, 369
SacI GAGCTC 2 cut(s) 147, 1077
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 2 cut(s) 240, 302
SatI GCNGC 6 cut(s) 722, 770, 962, 1017, 1020, 1216
Sau3AI GATC 7 cut(s) 90, 174, 183, 267, 395, 933, 1033
SchI GAGTC 2 cut(s) 595, 902
ScrFI CCNGG 1 cut(s) 905
SduI GDGCHC 4 cut(s) 147, 487, 643, 1077
SfaNI GCATC 3 cut(s) 214, 1003, 1064
SfcI CTRYAG 1 cut(s) 711
Sfr274I CTCGAG 2 cut(s) 146, 923
SfuI TTCGAA 1 cut(s) 317
SgrDI CGTCGACG 1 cut(s) 95
SlaI CTCGAG 2 cut(s) 146, 923
SmiMI CAYNNNNRTG 2 cut(s) 351, 369
SmlI CTYRAG 5 cut(s) 146, 155, 486, 572, 923
SmoI CTYRAG 5 cut(s) 146, 155, 486, 572, 923
SseBI AGGCCT 1 cut(s) 1349
SsiI CCGC 3 cut(s) 532, 805, 1016
SstI GAGCTC 2 cut(s) 147, 1077
StuI AGGCCT 1 cut(s) 1349
StyD4I CCNGG 1 cut(s) 903
StyI CCWWGG 1 cut(s) 837
TaaI ACNGT 3 cut(s) 414, 879, 1094
TaiI ACGT 3 cut(s) 136, 441, 1170
TatI WGTACW 1 cut(s) 1094
TauI GCSGC 1 cut(s) 1019
TfiI GAWTC 3 cut(s) 59, 151, 754
Tru1I TTAA 2 cut(s) 240, 302
Tru9I TTAA 2 cut(s) 240, 302
TscAI CASTG 1 cut(s) 595
TseI GCWGC 5 cut(s) 721, 769, 961, 1019, 1215
TspDTI ATGAA 4 cut(s) 267, 746, 783, 845
TspRI CASTG 1 cut(s) 595
Tth111I GACNNNGTC 1 cut(s) 101
XapI RAATTY 4 cut(s) 553, 843, 950, 1122
XcmI CCANNNNNNNNNTGG 1 cut(s) 385
XhoI CTCGAG 2 cut(s) 146, 923
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 164
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.