MD04G1206400.v1.1

Serine--tRNA

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
Physical Location & Seq
Reverse (-)
29215321 .. 29219010
3690 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1206400.v1.1.491

Sequence Viewer

Length: 1344 bp
ATGCTGGACATCAATCTGTTCAGAGAGGAGAAGGGCAACAACCCCGAAATCATCCGGGAATCTCAACGACGCCGGTTCAAAGACGTTGAGATCGTCGACGAGGTCATCCAGCTCGACATAGAATGGCGCCAGCGTCAATTCGAGCTCGAGAGCCTTCGGAAAGAGTTCAACAAGATCAACAAGCGAGTTGCTCAGCTCAGGATTGCGGGAGAGGATGCAACTGAGGTGATAAAGGACACAGAGGACAATAAAAGGTTGGCGGCAGAGAAAGAAGTTGAAGTGCGAGAAGCTTTAACACAGTTGAATTCAAAATTGGAAATCGTTGGAAACCTTGTGCATGATTCGGTTCCCATCAGCAAAGATGAGGAGAATAATGCTGTGGTTAGATCATGGGGTGACAAACGAGTGGAGCCAAAACTAAAAAACCATGTTGAGCTTGTTGAGCTTCTTGGGATCGCAGACTTGAAGAAAGGCGCTGAAGTGGCTGGAGGTAGAGGTTTTTACCTGAAAGGTGCTGGTGTACGCCTTAATCAAGCTCTAATAAACTTCGGTCTTGATTTTCTTGAGAAAAGAGGATATACAGAACTGCAGACCCCATTTTTCATGAGAAAAGATATCATGGGGAAGTGCGCTCAATTAGCCCAATTTGATGAGGAACTTTACAAGGTTACTGGTGAAGGTGATGACAAATATCTGATTGCTACAGCTGAACAGCCACTTTGTGCATATCATCTAGATGATTGGATTCATCCATCCCAGCTACCCTTAAGATATGCTGGATACTCATCCTGCTTCCGTAAAGAAGCTGGTTCACATGGTCGAGATACCTTGGGAATTTTTAGGGTTCATCAGTTCGAGAAAGTTGAACAATTCTGTATTACAAGCCCAAATGGCAATGACTCTTGGGAAATGCATGAGGAAATGATCAAAAACTCAGAGGAATTTTATCAAGCGTTAGGGCTCCCCTATCATATTGTGTCCATCGTTTCTGGTGCTTTGAATGATGCCGCAGCAAAGAAGTATGATCTGGAAGGATGGTTTCCTGCATCTCAGACATACAGAGAGCTGGTTTCTTGTTCAAACTGTACGGACTACCAGTCAAGAAAGTTAGAAATTCGATATGGGCAGAAAAAGAGCAACGAGCAGACAAAGCAATATGTTCACTTATTGAACTCGACTCTTACAGCGACTGAGAGAACTGTATGCTGCATTCTCGAGAACTACCAGACTGAAGAGGGTGTAAACGTACCGAAAGTTCTTCAACCCTTCATGGGTGGAAAGGAGTTCTTACCATTCAAGGCCAAACCAGCCCCTGAAGTCAAAGGGAAGAAATCGAAGGCCTAA

Protein Analysis

448

Amino Acids

51.18

Weight (kDa)

5.88

Isoelectric Point (pI)

42.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Seryl_tRNA_N PF02403 1 - 112 1.6e-23 Seryl-tRNA synthetase N-terminal domain
tRNA-synt_2b PF00587 221 - 408 1.9e-43 tRNA synthetase class II core domain (G, H, P, S and T)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 126
AccI GTMKAC 1 cut(s) 96
AciI CCGC 3 cut(s) 206, 260, 1008
AclWI GGATC 1 cut(s) 461
AcsI RAATTY 4 cut(s) 304, 834, 941, 1113
AcuI CTGAAG 3 cut(s) 498, 1251, 1335
AcyI GRCGYC 2 cut(s) 70, 127
AdeI CACNNNGTG 1 cut(s) 722
AfaI GTAC 3 cut(s) 522, 1087, 1248
AfiI CCNNNNNNNGG 1 cut(s) 1271
AflII CTTAAG 1 cut(s) 766
AhdI GACNNNNNGTC 1 cut(s) 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 296, 328
Alw21I GWGCWC 1 cut(s) 147
AlwI GGATC 1 cut(s) 461
AlwNI CAGNNNCTG 2 cut(s) 1190, 1313
Ama87I CYCGRG 2 cut(s) 146, 1214
AoxI GGCC 2 cut(s) 1299, 1338
ApeKI GCWGC 2 cut(s) 1010, 1206
ApoI RAATTY 4 cut(s) 304, 834, 941, 1113
Asp700I GAANNNNTTC 1 cut(s) 164
AspLEI GCGC 3 cut(s) 129, 476, 632
AsuC2I CCSGG 1 cut(s) 56
AsuHPI GGTGA 4 cut(s) 238, 407, 686, 692
AvaI CYCGRG 2 cut(s) 146, 1214
BanI GGYRCC 1 cut(s) 126
BanII GRGCYC 2 cut(s) 147, 963
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 2 cut(s) 1022, 1193
BccI CCATC 4 cut(s) 359, 760, 989, 1029
BciVI GTATCC 1 cut(s) 773
BclI TGATCA 1 cut(s) 924
BcnI CCSGG 1 cut(s) 56
BfaI CTAG 1 cut(s) 734
BfmI CTRYAG 2 cut(s) 587, 702
BfoI RGCGCY 2 cut(s) 130, 477
BfrI CTTAAG 1 cut(s) 766
BfuI GTATCC 1 cut(s) 773
BglI GCCNNNNNGGC 1 cut(s) 891
BisI GCNGC 4 cut(s) 261, 1008, 1011, 1207
BlpI GCTNAGC 1 cut(s) 192
BlsI GCNGC 4 cut(s) 262, 1009, 1012, 1208
Bme1390I CCNGG 1 cut(s) 56
BmeRI GACNNNNNGTC 1 cut(s) 1096
BmeT110I CYCGRG 2 cut(s) 146, 1214
BmiI GGNNCC 4 cut(s) 128, 348, 411, 962
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 3 cut(s) 205, 994, 1055
BpmI CTGGAG 1 cut(s) 507
Bpu10I CCTNAGC 1 cut(s) 197
Bpu1102I GCTNAGC 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 56
BsaBI GATNNNNATC 1 cut(s) 784
BsaHI GRCGYC 2 cut(s) 70, 127
BsaJI CCNNGG 1 cut(s) 828
Bsc4I CCNNNNNNNGG 1 cut(s) 1271
Bse118I RCCGGY 1 cut(s) 72
Bse1I ACTGG 2 cut(s) 676, 1096
Bse3DI GCAATG 1 cut(s) 901
Bse8I GATNNNNATC 1 cut(s) 784
BseDI CCNNGG 1 cut(s) 828
BseGI GGATG 7 cut(s) 51, 105, 220, 748, 752, 785, 1040
BseJI GATNNNNATC 1 cut(s) 784
BseLI CCNNNNNNNGG 1 cut(s) 1271
BseMI GCAATG 1 cut(s) 901
BseMII CTCAG 6 cut(s) 206, 211, 213, 948, 1064, 1182
BseNI ACTGG 2 cut(s) 676, 1096
BseRI GAGGAG 2 cut(s) 41, 380
BseXI GCAGC 2 cut(s) 1022, 1193
BseYI CCCAGC 1 cut(s) 756
BshFI GGCC 2 cut(s) 1301, 1340
BshNI GGYRCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 147
BsiHKCI CYCGRG 2 cut(s) 146, 1214
BsiSI CCGG 2 cut(s) 55, 73
BslI CCNNNNNNNGG 1 cut(s) 1271
BsmI GAATGC 1 cut(s) 1209
BsnI GGCC 2 cut(s) 1301, 1340
BsoBI CYCGRG 2 cut(s) 146, 1214
Bsp1286I GDGCHC 2 cut(s) 147, 963
Bsp143I GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
Bsp1720I GCTNAGC 1 cut(s) 192
BspACI CCGC 3 cut(s) 206, 260, 1008
BspANI GGCC 2 cut(s) 1301, 1340
BspCNI CTCAG 6 cut(s) 205, 210, 214, 947, 1063, 1183
BspHI TCATGA 1 cut(s) 603
BspLI GGNNCC 4 cut(s) 128, 348, 411, 962
BspMAI CTGCAG 1 cut(s) 591
BspPI GGATC 1 cut(s) 461
BspT107I GGYRCC 1 cut(s) 126
BspTI CTTAAG 1 cut(s) 766
BsrDI GCAATG 1 cut(s) 901
BsrFI RCCGGY 1 cut(s) 72
BsrI ACTGG 2 cut(s) 676, 1096
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 828
BssMI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
BssNI GRCGYC 2 cut(s) 70, 127
BssT1I CCWWGG 1 cut(s) 828
Bst4CI ACNGT 3 cut(s) 300, 1085, 1201
Bst6I CTCTTC 1 cut(s) 1227
BstACI GRCGYC 2 cut(s) 70, 127
BstAFI CTTAAG 1 cut(s) 766
BstC8I GCNNGC 1 cut(s) 131
BstDEI CTNAG 6 cut(s) 192, 197, 222, 934, 1050, 1191
BstF5I GGATG 7 cut(s) 51, 105, 220, 748, 752, 785, 1040
BstH2I RGCGCY 2 cut(s) 130, 477
BstHHI GCGC 3 cut(s) 129, 476, 632
BstKTI GATC 6 cut(s) 93, 177, 389, 456, 927, 1027
BstMBI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
BstMWI GCNNNNNNNGC 6 cut(s) 442, 482, 638, 891, 1150, 1307
BstSCI CCNGG 1 cut(s) 54
BstSFI CTRYAG 2 cut(s) 587, 702
BstV1I GCAGC 2 cut(s) 1022, 1193
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 2 cut(s) 1301, 1340
BtsCI GGATG 7 cut(s) 51, 105, 220, 748, 752, 785, 1040
Cac8I GCNNGC 1 cut(s) 131
CaiI CAGNNNCTG 2 cut(s) 1190, 1313
CciI TCATGA 1 cut(s) 603
CfoI GCGC 3 cut(s) 129, 476, 632
Cfr10I RCCGGY 1 cut(s) 72
CseI GACGC 2 cut(s) 78, 122
Csp6I GTAC 3 cut(s) 521, 1086, 1247
CviAII CATG 8 cut(s) 338, 390, 428, 604, 619, 815, 914, 1270
CviQI GTAC 3 cut(s) 521, 1086, 1247
DdeI CTNAG 6 cut(s) 192, 197, 222, 934, 1050, 1191
DinI GGCGCC 1 cut(s) 128
DpnI GATC 6 cut(s) 92, 176, 388, 455, 926, 1026
DpnII GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
DraIII CACNNNGTG 1 cut(s) 722
DriI GACNNNNNGTC 1 cut(s) 1096
Eam1104I CTCTTC 1 cut(s) 1227
Eam1105I GACNNNNNGTC 1 cut(s) 1096
EarI CTCTTC 1 cut(s) 1227
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 828
Eco147I AGGCCT 1 cut(s) 1340
Eco24I GRGCYC 2 cut(s) 147, 963
Eco32I GATATC 1 cut(s) 616
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 3 cut(s) 498, 1251, 1335
Eco88I CYCGRG 2 cut(s) 146, 1214
EcoICRI GAGCTC 1 cut(s) 145
EcoRI GAATTC 1 cut(s) 304
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 828
EcoT22I ATGCAT 1 cut(s) 915
EcoT38I GRGCYC 2 cut(s) 147, 963
EgeI GGCGCC 1 cut(s) 128
EheI GGCGCC 1 cut(s) 128
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 8 cut(s) 341, 393, 431, 607, 622, 818, 917, 1273
FalI AAGNNNNNCTT 2 cut(s) 1271, 1303
FatI CATG 8 cut(s) 337, 389, 427, 603, 618, 814, 913, 1269
FauI CCCGC 1 cut(s) 199
FbaI TGATCA 1 cut(s) 924
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 4 cut(s) 261, 1008, 1011, 1207
FokI GGATG 7 cut(s) 38, 92, 227, 735, 739, 772, 1047
FriOI GRGCYC 2 cut(s) 147, 963
Fsp4HI GCNGC 4 cut(s) 261, 1008, 1011, 1207
FspBI CTAG 1 cut(s) 734
GlaI GCGC 3 cut(s) 128, 475, 631
GluI GCNGC 4 cut(s) 261, 1008, 1011, 1207
GsaI CCCAGC 1 cut(s) 760
GsuI CTGGAG 1 cut(s) 507
HaeII RGCGCY 2 cut(s) 130, 477
HaeIII GGCC 2 cut(s) 1301, 1340
HapII CCGG 2 cut(s) 55, 73
HgaI GACGC 2 cut(s) 78, 122
HhaI GCGC 3 cut(s) 129, 476, 632
Hin1I GRCGYC 2 cut(s) 70, 127
Hin1II CATG 8 cut(s) 341, 393, 431, 607, 622, 818, 917, 1273
Hin6I GCGC 3 cut(s) 127, 474, 630
HinP1I GCGC 3 cut(s) 127, 474, 630
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 5 cut(s) 59, 341, 745, 899, 1177
HpaII CCGG 2 cut(s) 55, 73
HphI GGTGA 4 cut(s) 238, 407, 686, 692
Hpy166II GTNNAC 5 cut(s) 97, 521, 812, 1162, 1243
Hpy188I TCNGA 5 cut(s) 23, 159, 696, 937, 1053
Hpy8I GTNNAC 5 cut(s) 97, 521, 812, 1162, 1243
Hpy99I CGWCG 3 cut(s) 72, 98, 101
HpyAV CCTTC 6 cut(s) 25, 164, 671, 1025, 1276, 1330
HpyCH4III ACNGT 3 cut(s) 300, 1085, 1201
HpyCH4IV ACGT 2 cut(s) 84, 1245
HpyCH4V TGCA 7 cut(s) 218, 337, 589, 725, 913, 1046, 1209
HpyF10VI GCNNNNNNNGC 6 cut(s) 442, 482, 638, 891, 1150, 1307
HpyF3I CTNAG 6 cut(s) 192, 197, 222, 934, 1050, 1191
HpySE526I ACGT 2 cut(s) 84, 1245
Hsp92I GRCGYC 2 cut(s) 70, 127
Hsp92II CATG 8 cut(s) 341, 393, 431, 607, 622, 818, 917, 1273
HspAI GCGC 3 cut(s) 127, 474, 630
KasI GGCGCC 1 cut(s) 126
Ksp22I TGATCA 1 cut(s) 924
Kzo9I GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
LmnI GCTCC 2 cut(s) 409, 966
Lsp1109I GCAGC 2 cut(s) 1022, 1193
LweI GCATC 3 cut(s) 205, 994, 1055
MaeI CTAG 1 cut(s) 734
MaeII ACGT 2 cut(s) 84, 1245
MaeIII GTNAC 2 cut(s) 395, 667
MalI GATC 6 cut(s) 92, 176, 388, 455, 926, 1026
MboI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
MboII GAAGA 4 cut(s) 478, 1244, 1250, 1339
MhlI GDGCHC 2 cut(s) 147, 963
MluCI AATT 9 cut(s) 137, 304, 311, 635, 644, 834, 869, 941, 1113
Mly113I GGCGCC 1 cut(s) 127
MlyI GAGTC 2 cut(s) 893, 1171
MmeI TCCRAC 1 cut(s) 304
Mph1103I ATGCAT 1 cut(s) 915
MroXI GAANNNNTTC 1 cut(s) 164
MseI TTAA 3 cut(s) 293, 528, 767
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 1 cut(s) 707
MspCI CTTAAG 1 cut(s) 766
MspI CCGG 2 cut(s) 55, 73
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 1209
MwoI GCNNNNNNNGC 6 cut(s) 442, 482, 638, 891, 1150, 1307
NarI GGCGCC 1 cut(s) 127
NciI CCSGG 1 cut(s) 56
NdeII GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
NlaIII CATG 8 cut(s) 341, 393, 431, 607, 622, 818, 917, 1273
NlaIV GGNNCC 4 cut(s) 128, 348, 411, 962
NmuCI GTSAC 1 cut(s) 395
NsiI ATGCAT 1 cut(s) 915
PaeR7I CTCGAG 2 cut(s) 146, 1214
PagI TCATGA 1 cut(s) 603
PceI AGGCCT 1 cut(s) 1340
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PctI GAATGC 1 cut(s) 1209
PdmI GAANNNNTTC 1 cut(s) 164
PfeI GAWTC 3 cut(s) 59, 341, 745
PflFI GACNNNGTC 1 cut(s) 101
PfoI TCCNGGA 1 cut(s) 54
PkrI GCNGC 4 cut(s) 262, 1009, 1012, 1208
PleI GAGTC 2 cut(s) 893, 1171
PluTI GGCGCC 1 cut(s) 130
PpsI GAGTC 2 cut(s) 893, 1171
Psp124BI GAGCTC 1 cut(s) 147
PspFI CCCAGC 1 cut(s) 756
PspN4I GGNNCC 4 cut(s) 128, 348, 411, 962
PsrI GAACNNNNNNTAC 2 cut(s) 1239, 1271
PstI CTGCAG 1 cut(s) 591
PstNI CAGNNNCTG 2 cut(s) 1190, 1313
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 707
RsaI GTAC 3 cut(s) 522, 1087, 1248
RsaNI GTAC 3 cut(s) 521, 1086, 1247
RseI CAYNNNNRTG 1 cut(s) 735
SacI GAGCTC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 3 cut(s) 293, 528, 767
SatI GCNGC 4 cut(s) 261, 1008, 1011, 1207
Sau3AI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
SchI GAGTC 2 cut(s) 893, 1171
ScrFI CCNGG 1 cut(s) 56
SduI GDGCHC 2 cut(s) 147, 963
SfaNI GCATC 3 cut(s) 205, 994, 1055
SfcI CTRYAG 2 cut(s) 587, 702
SfoI GGCGCC 1 cut(s) 128
Sfr274I CTCGAG 2 cut(s) 146, 1214
SgrDI CGTCGACG 1 cut(s) 95
SlaI CTCGAG 2 cut(s) 146, 1214
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 4 cut(s) 146, 563, 766, 1214
SmoI CTYRAG 4 cut(s) 146, 563, 766, 1214
Sse9I AATT 9 cut(s) 137, 304, 311, 635, 644, 834, 869, 941, 1113
SseBI AGGCCT 1 cut(s) 1340
SsiI CCGC 3 cut(s) 206, 260, 1008
SspDI GGCGCC 1 cut(s) 126
SspMI CTAG 1 cut(s) 734
SstI GAGCTC 1 cut(s) 147
StuI AGGCCT 1 cut(s) 1340
StyD4I CCNGG 1 cut(s) 54
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 3 cut(s) 300, 1085, 1201
TaiI ACGT 2 cut(s) 87, 1248
TaqII GACCGA 1 cut(s) 539
TasI AATT 9 cut(s) 137, 304, 311, 635, 644, 834, 869, 941, 1113
TauI GCSGC 2 cut(s) 263, 1010
TfiI GAWTC 3 cut(s) 59, 341, 745
Tru1I TTAA 3 cut(s) 293, 528, 767
Tru9I TTAA 3 cut(s) 293, 528, 767
TseFI GTSAC 1 cut(s) 395
TseI GCWGC 2 cut(s) 1010, 1206
Tsp45I GTSAC 1 cut(s) 395
TspDTI ATGAA 4 cut(s) 592, 737, 836, 1258
TspGWI ACGGA 2 cut(s) 785, 1103
Tth111I GACNNNGTC 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 766
XapI RAATTY 4 cut(s) 304, 834, 941, 1113
XbaI TCTAGA 1 cut(s) 733
XhoI CTCGAG 2 cut(s) 146, 1214
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 1 cut(s) 164
XspI CTAG 1 cut(s) 734
Zsp2I ATGCAT 1 cut(s) 915
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.