Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0004327

Physical Location & Seq

Genomic Coordinates Reverse (-)

32357780 .. 32359880

Gene Structure 2101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g37770.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTTCAGCTTAAAATTAAAGATGCTGAGTTGAATAAAAAGGCAGAGGAAAAGAAGAGGTTGGTGGCAGAGAAAGAAGCTGAAGTTGGAGAAGATTTAGCACAAAGGAATTCAAGCTTGGAAGAAATTGGGAACATTGTCCATGATTCAGTCCCCATCAGCGAAGATGAGGCAAACAATGAAGTGGTTAGATCATGGGGAGAAAAGCGGGTGGAGGCAGCACTGAAAAATCATGTCGAGCTTTGTAGGCTTCTTGGGATTGCTGACTTTGAGAGAGGTGCTCAAGTGGCTGGATCCAGAGGTTATTACATTGAAGGCGTCGGCTTAGACCTTCATGAAGCTCTCAAAAACTTTGCTCTAGATTTTCTTGAGGACAAGAAATTCAAGAAAATCACTCCTCCATTTTCTATGAAACAAGACGTCAGGGCCAAATGTGCTCAATTACAGGAATTCGACGACGAGCTTTATAAGGTAACTGGTGAAGGAGTTGACAAGTATCTGATTGCTACTGCTGAACAGCCTCTATGTGCTCGTCACAAGGATGAATGGTTCCATCCCTCCCAGCTACCCAAGAAATATGCTGGATTTTCATATTGCTTCAGGACAGAAGCTGGCTCGCATGGACGAGACACATTGGGGCTTTTTAGGACTCATGAGTTCGCCAAAGTAGAACAATTCTGTATTACCAGCCCAAATGGAAATGACTCCTGGGATATGCATGAGGAGATGATCATGAACTCAGAGGAGTTCTACAGAAAGCTTAGCATTCCATATCGCGTAGTGAACATTGTTTCGGGTGCTTTGAATGGTGCAGCTGCAAAGAAGTATGACTTAGAAGGCTGGTTTCCTGCATCACAGACATATAGAGAACTGGTCTCGTGTTCAAACTGTACAGACTTTCAATCCAGAAAATTAGAAATTAGATATATATGGACAGGCAATGAGAAGACGAAGCAATATGTACACATGTTGAACTCCACCCTTTACTGCAATTGGGAGAACTATGTGCTGCATTCTCGAAAACTATCAAAGGGAGGATGGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

349

Amino Acids

39.97

Weight (kDa)

6.0

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2b	PF00587	156 - 327	6.2e-34	tRNA synthetase class II core domain (G, H, P, S and T)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27470
fragaria_vesca	FvH4_3g37770 FvH4_6g05710
malus_domestica	MD04G1206100.v1.1 MD04G1206400.v1.1 MD12G1220200.v1.1
prunus_persica	Prupe.6G327000_v2.0.a1
pyrus_communis	pycom04g18250 pycom12g20570
rosa_chinensis	RchiOBHm_Chr2g0115881 RchiOBHm_Chr3g0454601
rosa_laevigata	RLG00000018221 RLG00000019452 RLG00000025430 RLG00000031813
rosa_multiflora	Rmu_co8405619.1_g000001 Rmu_sc0001792.1_g000036 Rmu_ssc0000197.1_g000016
rosa_roxburghii	Rroxscaffold_1G00065260 Rroxscaffold_6G00424940
rosa_rugosa	Rorug02G0200700 Rorug03G0000500 Rorug04G0455300 Rorug05G0211400
rosa_samantha	Rh2BG268600 Rh2CG264100 Rh3AG060400 Rh3BG062500 Rh3CG061300 Rh3DG062100
rosa_wichuraiana	Rw2G020190 Rw3G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	468
AatII	GACGTC	1 cut(s)	423
AccII	CGCG	1 cut(s)	777
AciI	CCGC	1 cut(s)	208
AclWI	GGATC	2 cut(s)	288, 301
AcsI	RAATTY	3 cut(s)	109, 380, 449
AcuI	CTGAAG	2 cut(s)	102, 583
AcyI	GRCGYC	2 cut(s)	318, 420
AfaI	GTAC	2 cut(s)	892, 963
AflIII	ACRYGT	1 cut(s)	966
AgsI	TTSAA	8 cut(s)	34, 114, 314, 385, 805, 885, 902, 973
AjnI	CCWGG	1 cut(s)	707
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 101, 133
AloI	GAACNNNNNNTCC	2 cut(s)	533, 565
Alw21I	GWGCWC	3 cut(s)	283, 439, 532
Alw26I	GTCTC	2 cut(s)	621, 880
AlwI	GGATC	2 cut(s)	288, 301
AlwNI	CAGNNNCTG	1 cut(s)	611
AoxI	GGCC	1 cut(s)	426
ApeKI	GCWGC	4 cut(s)	218, 812, 815, 1009
ApoI	RAATTY	3 cut(s)	109, 380, 449
AspS9I	GGNCC	1 cut(s)	426
AsuHPI	GGTGA	1 cut(s)	491
BamHI	GGATCC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	877
BbsI	GAAGAC	1 cut(s)	953
Bbv12I	GWGCWC	3 cut(s)	283, 439, 532
BbvI	GCAGC	4 cut(s)	230, 802, 824, 996
BccI	CCATC	3 cut(s)	164, 561, 1032
BciT130I	CCWGG	1 cut(s)	709
BclI	TGATCA	1 cut(s)	729
BcoDI	GTCTC	2 cut(s)	621, 880
BfaI	CTAG	1 cut(s)	359
BfmI	CTRYAG	1 cut(s)	751
BisI	GCNGC	4 cut(s)	219, 813, 816, 1010
BlpI	GCTNAGC	1 cut(s)	761
BlsI	GCNGC	4 cut(s)	220, 814, 817, 1011
Bme1390I	CCNGG	1 cut(s)	709
BmgT120I	GGNCC	1 cut(s)	426
BmiI	GGNNCC	2 cut(s)	295, 551
BmrFI	CCNGG	1 cut(s)	709
BmsI	GCATC	2 cut(s)	13, 860
BpiI	GAAGAC	1 cut(s)	953
BplI	GAGNNNNNCTC	2 cut(s)	265, 297
Bpu1102I	GCTNAGC	1 cut(s)	761
BpuEI	CTTGAG	2 cut(s)	267, 389
BsaHI	GRCGYC	2 cut(s)	318, 420
BsaI	GGTCTC	1 cut(s)	880
BsaJI	CCNNGG	1 cut(s)	708
Bse1I	ACTGG	2 cut(s)	481, 876
Bse3DI	GCAATG	1 cut(s)	946
BseBI	CCWGG	1 cut(s)	709
BseDI	CCNNGG	1 cut(s)	708
BseGI	GGATG	3 cut(s)	547, 553, 1043
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	2 cut(s)	18, 753
BseNI	ACTGG	2 cut(s)	481, 876
BseRI	GAGGAG	3 cut(s)	387, 737, 758
BseXI	GCAGC	4 cut(s)	230, 802, 824, 996
BseYI	CCCAGC	1 cut(s)	561
BsgI	GTGCAG	1 cut(s)	831
Bsh1236I	CGCG	1 cut(s)	777
BshFI	GGCC	1 cut(s)	428
BsiHKAI	GWGCWC	3 cut(s)	283, 439, 532
BslFI	GGGAC	1 cut(s)	137
BsmAI	GTCTC	2 cut(s)	621, 880
BsmFI	GGGAC	1 cut(s)	137
BsmI	GAATGC	2 cut(s)	765, 1012
BsnI	GGCC	1 cut(s)	428
Bso31I	GGTCTC	1 cut(s)	880
Bsp1286I	GDGCHC	3 cut(s)	283, 439, 532
Bsp1407I	TGTACA	2 cut(s)	890, 961
Bsp143I	GATC	3 cut(s)	191, 293, 729
Bsp1720I	GCTNAGC	1 cut(s)	761
BspACI	CCGC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	428
BspCNI	CTCAG	2 cut(s)	19, 752
BspFNI	CGCG	1 cut(s)	777
BspHI	TCATGA	3 cut(s)	334, 652, 732
BspLI	GGNNCC	2 cut(s)	295, 551
BspPI	GGATC	2 cut(s)	288, 301
BspTNI	GGTCTC	1 cut(s)	880
BsrDI	GCAATG	1 cut(s)	946
BsrGI	TGTACA	2 cut(s)	890, 961
BsrI	ACTGG	2 cut(s)	481, 876
BssECI	CCNNGG	1 cut(s)	708
BssMI	GATC	3 cut(s)	191, 293, 729
BssNI	GRCGYC	2 cut(s)	318, 420
BssSI	CACGAG	1 cut(s)	877
Bst2BI	CACGAG	1 cut(s)	877
Bst2UI	CCWGG	1 cut(s)	709
Bst4CI	ACNGT	1 cut(s)	890
Bst6I	CTCTTC	1 cut(s)	50
BstACI	GRCGYC	2 cut(s)	318, 420
BstAUI	TGTACA	2 cut(s)	890, 961
BstC8I	GCNNGC	2 cut(s)	613, 617
BstDEI	CTNAG	5 cut(s)	27, 325, 739, 761, 832
BstF5I	GGATG	3 cut(s)	547, 553, 1043
BstFNI	CGCG	1 cut(s)	777
BstKTI	GATC	3 cut(s)	194, 296, 732
BstMAI	GTCTC	2 cut(s)	621, 880
BstMBI	GATC	3 cut(s)	191, 293, 729
BstMWI	GCNNNNNNNGC	3 cut(s)	247, 287, 434
BstNI	CCWGG	1 cut(s)	709
BstNSI	RCATGY	1 cut(s)	970
BstSCI	CCNGG	1 cut(s)	707
BstSFI	CTRYAG	1 cut(s)	751
BstUI	CGCG	1 cut(s)	777
BstV1I	GCAGC	4 cut(s)	230, 802, 824, 996
BstV2I	GAAGAC	1 cut(s)	953
BstX2I	RGATCY	1 cut(s)	293
BstYI	RGATCY	1 cut(s)	293
BsuRI	GGCC	1 cut(s)	428
BtsCI	GGATG	3 cut(s)	547, 553, 1043
BtsIMutI	CAGTG	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	613, 617
CaiI	CAGNNNCTG	1 cut(s)	611
CciI	TCATGA	3 cut(s)	334, 652, 732
Cfr13I	GGNCC	1 cut(s)	426
CseI	GACGC	1 cut(s)	307
Csp6I	GTAC	2 cut(s)	891, 962
CviAII	CATG	9 cut(s)	143, 195, 233, 335, 620, 653, 719, 733, 967
CviQI	GTAC	2 cut(s)	891, 962
DdeI	CTNAG	5 cut(s)	27, 325, 739, 761, 832
DpnI	GATC	3 cut(s)	193, 295, 731
DpnII	GATC	3 cut(s)	191, 293, 729
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
Eco31I	GGTCTC	1 cut(s)	880
Eco57I	CTGAAG	2 cut(s)	102, 583
EcoRI	GAATTC	2 cut(s)	109, 449
EcoRII	CCWGG	1 cut(s)	707
EcoT22I	ATGCAT	1 cut(s)	720
FaeI	CATG	9 cut(s)	146, 198, 236, 338, 623, 656, 722, 736, 970
FalI	AAGNNNNNCTT	2 cut(s)	815, 847
FaqI	GGGAC	1 cut(s)	137
FatI	CATG	9 cut(s)	142, 194, 232, 334, 619, 652, 718, 732, 966
FauI	CCCGC	1 cut(s)	201
FbaI	TGATCA	1 cut(s)	729
Fnu4HI	GCNGC	4 cut(s)	219, 813, 816, 1010
FokI	GGATG	2 cut(s)	540, 554
Fsp4HI	GCNGC	4 cut(s)	219, 813, 816, 1010
FspBI	CTAG	1 cut(s)	359
GluI	GCNGC	4 cut(s)	219, 813, 816, 1010
GsaI	CCCAGC	1 cut(s)	565
HaeIII	GGCC	1 cut(s)	428
HgaI	GACGC	1 cut(s)	307
Hin1I	GRCGYC	2 cut(s)	318, 420
Hin1II	CATG	9 cut(s)	146, 198, 236, 338, 623, 656, 722, 736, 970
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	115, 758
HinfI	GANTC	3 cut(s)	146, 649, 704
HphI	GGTGA	1 cut(s)	491
Hpy166II	GTNNAC	3 cut(s)	490, 784, 964
Hpy188I	TCNGA	2 cut(s)	501, 742
Hpy8I	GTNNAC	3 cut(s)	490, 784, 964
Hpy99I	CGWCG	3 cut(s)	323, 458, 461
HpyAV	CCTTC	4 cut(s)	308, 341, 476, 830
HpyCH4III	ACNGT	1 cut(s)	890
HpyCH4IV	ACGT	1 cut(s)	420
HpyCH4V	TGCA	6 cut(s)	718, 812, 818, 851, 990, 1012
HpyF10VI	GCNNNNNNNGC	3 cut(s)	247, 287, 434
HpyF3I	CTNAG	5 cut(s)	27, 325, 739, 761, 832
HpySE526I	ACGT	1 cut(s)	420
Hsp92I	GRCGYC	2 cut(s)	318, 420
Hsp92II	CATG	9 cut(s)	146, 198, 236, 338, 623, 656, 722, 736, 970
Ksp22I	TGATCA	1 cut(s)	729
Kzo9I	GATC	3 cut(s)	191, 293, 729
Lsp1109I	GCAGC	4 cut(s)	230, 802, 824, 996
LweI	GCATC	2 cut(s)	13, 860
MaeI	CTAG	1 cut(s)	359
MaeII	ACGT	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	472, 533
MalI	GATC	3 cut(s)	193, 295, 731
MboI	GATC	3 cut(s)	191, 293, 729
MboII	GAAGA	5 cut(s)	67, 104, 134, 176, 958
MfeI	CAATTG	1 cut(s)	991
MflI	RGATCY	1 cut(s)	293
MhlI	GDGCHC	3 cut(s)	283, 439, 532
MlyI	GAGTC	2 cut(s)	643, 698
MmeI	TCCRAC	1 cut(s)	67
Mph1103I	ATGCAT	1 cut(s)	720
MseI	TTAA	2 cut(s)	12, 18
MslI	CAYNNNNRTG	1 cut(s)	540
MspA1I	CMGCKG	1 cut(s)	815
MspR9I	CCNGG	1 cut(s)	709
MunI	CAATTG	1 cut(s)	991
Mva1269I	GAATGC	2 cut(s)	765, 1012
MvaI	CCWGG	1 cut(s)	709
MvnI	CGCG	1 cut(s)	777
MwoI	GCNNNNNNNGC	3 cut(s)	247, 287, 434
NdeII	GATC	3 cut(s)	191, 293, 729
NlaIII	CATG	9 cut(s)	146, 198, 236, 338, 623, 656, 722, 736, 970
NlaIV	GGNNCC	2 cut(s)	295, 551
NmuCI	GTSAC	1 cut(s)	533
NsiI	ATGCAT	1 cut(s)	720
NspI	RCATGY	1 cut(s)	970
PagI	TCATGA	3 cut(s)	334, 652, 732
PciI	ACATGT	1 cut(s)	966
PctI	GAATGC	2 cut(s)	765, 1012
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	4 cut(s)	220, 814, 817, 1011
PleI	GAGTC	2 cut(s)	643, 698
PpsI	GAGTC	2 cut(s)	643, 698
PscI	ACATGT	1 cut(s)	966
PsiI	TTATAA	1 cut(s)	468
Psp6I	CCWGG	1 cut(s)	707
PspFI	CCCAGC	1 cut(s)	561
PspGI	CCWGG	1 cut(s)	707
PspN4I	GGNNCC	2 cut(s)	295, 551
PspPI	GGNCC	1 cut(s)	426
PstNI	CAGNNNCTG	1 cut(s)	611
PsuI	RGATCY	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	892, 963
RsaNI	GTAC	2 cut(s)	891, 962
RseI	CAYNNNNRTG	1 cut(s)	540
SaqAI	TTAA	2 cut(s)	12, 18
SatI	GCNGC	4 cut(s)	219, 813, 816, 1010
Sau3AI	GATC	3 cut(s)	191, 293, 729
Sau96I	GGNCC	1 cut(s)	426
SchI	GAGTC	2 cut(s)	643, 698
ScrFI	CCNGG	1 cut(s)	709
SduI	GDGCHC	3 cut(s)	283, 439, 532
SfaNI	GCATC	2 cut(s)	13, 860
SfcI	CTRYAG	1 cut(s)	751
SmiMI	CAYNNNNRTG	1 cut(s)	540
SmlI	CTYRAG	2 cut(s)	282, 368
SmoI	CTYRAG	2 cut(s)	282, 368
SsiI	CCGC	1 cut(s)	208
SspMI	CTAG	1 cut(s)	359
StyD4I	CCNGG	1 cut(s)	707
TaaI	ACNGT	1 cut(s)	890
TaiI	ACGT	1 cut(s)	423
TaqI	TCGA	3 cut(s)	237, 453, 1018
TatI	WGTACW	2 cut(s)	890, 961
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	2 cut(s)	12, 18
Tru9I	TTAA	2 cut(s)	12, 18
TscAI	CASTG	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	533
TseI	GCWGC	4 cut(s)	218, 812, 815, 1009
Tsp45I	GTSAC	1 cut(s)	533
TspDTI	ATGAA	7 cut(s)	195, 323, 351, 425, 558, 579, 749
TspRI	CASTG	1 cut(s)	228
XapI	RAATTY	3 cut(s)	109, 380, 449
XbaI	TCTAGA	1 cut(s)	358
XceI	RCATGY	1 cut(s)	970
XspI	CTAG	1 cut(s)	359
ZraI	GACGTC	1 cut(s)	421
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.