Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8405619.1

Orthogroup ID

OG0004327

Physical Location & Seq

Genomic Coordinates Forward (+)

23 .. 1054

Gene Structure 1032 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8405619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ctggaagtcattggaaaccttgtgcatgatagtgttcccttgcatgatgatgaggccaataatgttgtggttagatcggtgggtgagaaacggttggagccaaaactcaaatatcacgttgagcttgttgagcttgtgggtattgctgacttgaagaaaggtgctcaagtagcaggaggtagaggttattacttgaaaggtgctggcgtccgcctcaatcaagctctgataaattttggtcttgatttccttgagaaaaggggatacactgcattgcagactccattttttatgaggaaagatatcatggcaaagtgtgctcaattagcacaattcgatgaggagctttataaggttaccggagagggtgatgacaaatatctgattgctacagctgagcagccactatgtgcatatcatgtggacgattggattcatccttcacagctgcccataagatatgctggatattcatcttgtttccgcaaggaagcgggttcacatggtcgagataccttgggaatttttagggttcatcagtttgaaaaagttgaacagttttgtatgacaagcccaaatggccaggactcttgggaaatgctcgaggaaatgatcaagaactctgaggaattttatcagcagctcaaacttccttatcgtgttgtgtccatcgtttctggtgctttgaatgatgcggcagcaaagaagtatgatctggaagggtggtttcctgcatctcagacatacagggagctcgtctcatgttcaaactgtacagactaccaatcaagaaaattaggaattcgatttgggcagaacaagagcaatgagcagacgaagcaatacgttcacatgttgaactccactcttacagcaactgagagaaccatttgctgcattcttgaaaactatcagagggaagatggtgttgaggtaccagaagtcttacgaaactacatgggtggagtgtccttcctaccattcaagaacaaaccagcccctgaagtcaaagggaagaaatcaaaggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004812 GO:0004828 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006434 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0034641 GO:0034645 GO:0034660 GO:0042221 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046686 GO:0050896 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

Seryl_tRNA_N tRNA-synt_2b

Protein Analysis

343

Amino Acids

38.85

Weight (kDa)

6.51

Isoelectric Point (pI)

35.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G27470
fragaria_vesca	FvH4_3g37770 FvH4_6g05710
malus_domestica	MD04G1206100.v1.1 MD04G1206400.v1.1 MD12G1220200.v1.1
prunus_persica	Prupe.6G327000_v2.0.a1
pyrus_communis	pycom04g18250 pycom12g20570
rosa_chinensis	RchiOBHm_Chr2g0115881 RchiOBHm_Chr3g0454601
rosa_laevigata	RLG00000018221 RLG00000019452 RLG00000025430 RLG00000031813
rosa_multiflora	Rmu_co8405619.1_g000001 Rmu_sc0001792.1_g000036 Rmu_ssc0000197.1_g000016
rosa_roxburghii	Rroxscaffold_1G00065260 Rroxscaffold_6G00424940
rosa_rugosa	Rorug02G0200700 Rorug03G0000500 Rorug04G0455300 Rorug05G0211400
rosa_samantha	Rh2BG268600 Rh2CG264100 Rh3AG060400 Rh3BG062500 Rh3CG061300 Rh3DG062100
rosa_wichuraiana	Rw2G020190 Rw3G004700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	351
Acc65I	GGTACC	1 cut(s)	934
AccB1I	GGYRCC	1 cut(s)	934
AciI	CCGC	4 cut(s)	211, 484, 494, 695
AcoI	YGGCCR	1 cut(s)	580
AcsI	RAATTY	4 cut(s)	232, 522, 629, 801
AcuI	CTGAAG	1 cut(s)	1023
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	410
AfaI	GTAC	2 cut(s)	775, 936
AflIII	ACRYGT	1 cut(s)	852
AgsI	TTSAA	9 cut(s)	154, 196, 545, 554, 688, 768, 859, 905, 985
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	8 cut(s)	124, 133, 224, 346, 395, 448, 643, 754
AluI	AGCT	8 cut(s)	124, 133, 224, 346, 395, 448, 643, 754
Alw21I	GWGCWC	3 cut(s)	166, 322, 756
Alw26I	GTCTC	1 cut(s)	763
AlwNI	CAGNNNCTG	2 cut(s)	878, 1001
Ama87I	CYCGRG	1 cut(s)	602
AoxI	GGCC	3 cut(s)	54, 580, 1026
ApeKI	GCWGC	5 cut(s)	400, 448, 640, 698, 894
ApoI	RAATTY	4 cut(s)	232, 522, 629, 801
Asp718I	GGTACC	1 cut(s)	934
AsuHPI	GGTGA	2 cut(s)	95, 380
AvaI	CYCGRG	1 cut(s)	602
BalI	TGGCCA	1 cut(s)	582
BanI	GGYRCC	1 cut(s)	934
BanII	GRGCYC	1 cut(s)	756
Bbv12I	GWGCWC	3 cut(s)	166, 322, 756
BbvI	GCAGC	5 cut(s)	412, 435, 652, 710, 881
BccI	CCATC	2 cut(s)	677, 917
BciT130I	CCWGG	1 cut(s)	584
BciVI	GTATCC	1 cut(s)	257
BclI	TGATCA	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	763
BfmI	CTRYAG	1 cut(s)	390
BfuI	GTATCC	1 cut(s)	257
BglI	GCCNNNNNGGC	1 cut(s)	579
BisI	GCNGC	6 cut(s)	401, 449, 641, 696, 699, 895
BlpI	GCTNAGC	1 cut(s)	396
BlsI	GCNGC	6 cut(s)	402, 450, 642, 697, 700, 896
Bme1390I	CCNGG	1 cut(s)	584
BmeT110I	CYCGRG	1 cut(s)	602
BmiI	GGNNCC	2 cut(s)	99, 936
BmrFI	CCNGG	1 cut(s)	584
BmsI	GCATC	2 cut(s)	682, 743
BplI	GAGNNNNNCTC	2 cut(s)	743, 775
Bpu1102I	GCTNAGC	1 cut(s)	396
BpuEI	CTTGAG	2 cut(s)	150, 272
BsaBI	GATNNNNATC	1 cut(s)	472
BsaHI	GRCGYC	1 cut(s)	207
BsaJI	CCNNGG	1 cut(s)	516
BsaWI	WCCGGW	1 cut(s)	359
Bse3DI	GCAATG	2 cut(s)	272, 832
Bse8I	GATNNNNATC	1 cut(s)	472
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	516
BseGI	GGATG	1 cut(s)	436
BseJI	GATNNNNATC	1 cut(s)	472
BseMI	GCAATG	2 cut(s)	272, 832
BseMII	CTCAG	4 cut(s)	387, 615, 752, 870
BseRI	GAGGAG	1 cut(s)	356
BseXI	GCAGC	5 cut(s)	412, 435, 652, 710, 881
BshFI	GGCC	3 cut(s)	56, 582, 1028
BshNI	GGYRCC	1 cut(s)	934
BsiHKAI	GWGCWC	3 cut(s)	166, 322, 756
BsiHKCI	CYCGRG	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	360
BsmAI	GTCTC	1 cut(s)	763
BsmBI	CGTCTC	1 cut(s)	763
BsmI	GAATGC	1 cut(s)	897
BsnI	GGCC	3 cut(s)	56, 582, 1028
BsoBI	CYCGRG	1 cut(s)	602
Bsp1286I	GDGCHC	3 cut(s)	166, 322, 756
Bsp1407I	TGTACA	1 cut(s)	773
Bsp143I	GATC	3 cut(s)	74, 612, 712
Bsp1720I	GCTNAGC	1 cut(s)	396
BspACI	CCGC	4 cut(s)	211, 484, 494, 695
BspANI	GGCC	3 cut(s)	56, 582, 1028
BspCNI	CTCAG	4 cut(s)	388, 616, 751, 871
BspLI	GGNNCC	2 cut(s)	99, 936
BspT107I	GGYRCC	1 cut(s)	934
BsrDI	GCAATG	2 cut(s)	272, 832
BsrGI	TGTACA	1 cut(s)	773
BssECI	CCNNGG	1 cut(s)	516
BssMI	GATC	3 cut(s)	74, 612, 712
BssNI	GRCGYC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	3 cut(s)	93, 558, 773
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	773
BstC8I	GCNNGC	1 cut(s)	205
BstDEI	CTNAG	4 cut(s)	396, 624, 738, 879
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	1 cut(s)	436
BstKTI	GATC	3 cut(s)	77, 615, 715
BstMAI	GTCTC	1 cut(s)	763
BstMBI	GATC	3 cut(s)	74, 612, 712
BstMWI	GCNNNNNNNGC	6 cut(s)	130, 170, 317, 326, 579, 838
BstNI	CCWGG	1 cut(s)	584
BstNSI	RCATGY	1 cut(s)	856
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	582
BstSFI	CTRYAG	1 cut(s)	390
BstV1I	GCAGC	5 cut(s)	412, 435, 652, 710, 881
BsuI	GTATCC	1 cut(s)	257
BsuRI	GGCC	3 cut(s)	56, 582, 1028
BtsCI	GGATG	1 cut(s)	436
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	205
CaiI	CAGNNNCTG	2 cut(s)	878, 1001
CseI	GACGC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	774, 935
CviAII	CATG	8 cut(s)	26, 44, 307, 419, 503, 762, 853, 958
CviQI	GTAC	2 cut(s)	774, 935
DdeI	CTNAG	4 cut(s)	396, 624, 738, 879
DpnI	GATC	3 cut(s)	76, 614, 714
DpnII	GATC	3 cut(s)	74, 612, 712
DraIII	CACNNNGTG	1 cut(s)	410
EaeI	YGGCCR	1 cut(s)	580
EciI	GGCGGA	1 cut(s)	200
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	1 cut(s)	516
Eco147I	AGGCCT	1 cut(s)	1028
Eco24I	GRGCYC	1 cut(s)	756
Eco32I	GATATC	1 cut(s)	304
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	1023
Eco88I	CYCGRG	1 cut(s)	602
Eco91I	GGTNACC	1 cut(s)	355
EcoICRI	GAGCTC	1 cut(s)	754
EcoO65I	GGTNACC	1 cut(s)	355
EcoRI	GAATTC	1 cut(s)	801
EcoRII	CCWGG	1 cut(s)	582
EcoRV	GATATC	1 cut(s)	304
EcoT14I	CCWWGG	1 cut(s)	516
EcoT38I	GRGCYC	1 cut(s)	756
ErhI	CCWWGG	1 cut(s)	516
Esp3I	CGTCTC	1 cut(s)	763
FaeI	CATG	8 cut(s)	29, 47, 310, 422, 506, 765, 856, 961
FatI	CATG	8 cut(s)	25, 43, 306, 418, 502, 761, 852, 957
FauI	CCCGC	1 cut(s)	487
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	6 cut(s)	401, 449, 641, 696, 699, 895
FokI	GGATG	1 cut(s)	423
FriOI	GRGCYC	1 cut(s)	756
Fsp4HI	GCNGC	6 cut(s)	401, 449, 641, 696, 699, 895
GluI	GCNGC	6 cut(s)	401, 449, 641, 696, 699, 895
HaeIII	GGCC	3 cut(s)	56, 582, 1028
HapII	CCGG	1 cut(s)	360
HgaI	GACGC	1 cut(s)	196
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	8 cut(s)	29, 47, 310, 422, 506, 765, 856, 961
HinfI	GANTC	3 cut(s)	280, 433, 587
HpaII	CCGG	1 cut(s)	360
HphI	GGTGA	2 cut(s)	95, 380
Hpy166II	GTNNAC	3 cut(s)	424, 500, 850
Hpy188I	TCNGA	5 cut(s)	228, 384, 625, 741, 915
Hpy188III	TCNNGA	7 cut(s)	242, 509, 616, 716, 789, 902, 985
Hpy8I	GTNNAC	3 cut(s)	424, 500, 850
HpyAV	CCTTC	3 cut(s)	450, 713, 982
HpyCH4III	ACNGT	3 cut(s)	93, 558, 773
HpyCH4IV	ACGT	2 cut(s)	117, 846
HpyCH4V	TGCA	7 cut(s)	25, 43, 272, 277, 413, 734, 897
HpyF10VI	GCNNNNNNNGC	6 cut(s)	130, 170, 317, 326, 579, 838
HpyF3I	CTNAG	4 cut(s)	396, 624, 738, 879
HpySE526I	ACGT	2 cut(s)	117, 846
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	8 cut(s)	29, 47, 310, 422, 506, 765, 856, 961
KpnI	GGTACC	1 cut(s)	938
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	3 cut(s)	74, 612, 712
LmnI	GCTCC	3 cut(s)	97, 343, 751
Lsp1109I	GCAGC	5 cut(s)	412, 435, 652, 710, 881
LweI	GCATC	2 cut(s)	682, 743
MaeII	ACGT	2 cut(s)	117, 846
MaeIII	GTNAC	1 cut(s)	355
MalI	GATC	3 cut(s)	76, 614, 714
MboI	GATC	3 cut(s)	74, 612, 712
MboII	GAAGA	3 cut(s)	166, 932, 1027
MhlI	GDGCHC	3 cut(s)	166, 322, 756
MlsI	TGGCCA	1 cut(s)	582
MluCI	AATT	7 cut(s)	232, 323, 332, 522, 629, 794, 801
MluNI	TGGCCA	1 cut(s)	582
MlyI	GAGTC	2 cut(s)	274, 581
MmeI	TCCRAC	1 cut(s)	75
Mox20I	TGGCCA	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	582
MslI	CAYNNNNRTG	2 cut(s)	30, 48
Msp20I	TGGCCA	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	395, 448
MspI	CCGG	1 cut(s)	360
MspR9I	CCNGG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	897
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	6 cut(s)	130, 170, 317, 326, 579, 838
NdeII	GATC	3 cut(s)	74, 612, 712
NlaIII	CATG	8 cut(s)	29, 47, 310, 422, 506, 765, 856, 961
NlaIV	GGNNCC	2 cut(s)	99, 936
NspI	RCATGY	1 cut(s)	856
PaeR7I	CTCGAG	1 cut(s)	602
PceI	AGGCCT	1 cut(s)	1028
PciI	ACATGT	1 cut(s)	852
PctI	GAATGC	1 cut(s)	897
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	6 cut(s)	402, 450, 642, 697, 700, 896
PleI	GAGTC	2 cut(s)	274, 581
PpsI	GAGTC	2 cut(s)	274, 581
PscI	ACATGT	1 cut(s)	852
PsiI	TTATAA	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	582
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	99, 936
PspXI	VCTCGAGB	1 cut(s)	602
PstNI	CAGNNNCTG	2 cut(s)	878, 1001
PvuII	CAGCTG	2 cut(s)	395, 448
RsaI	GTAC	2 cut(s)	775, 936
RsaNI	GTAC	2 cut(s)	774, 935
RseI	CAYNNNNRTG	2 cut(s)	30, 48
SacI	GAGCTC	1 cut(s)	756
SatI	GCNGC	6 cut(s)	401, 449, 641, 696, 699, 895
Sau3AI	GATC	3 cut(s)	74, 612, 712
SchI	GAGTC	2 cut(s)	274, 581
ScrFI	CCNGG	1 cut(s)	584
SduI	GDGCHC	3 cut(s)	166, 322, 756
SfaNI	GCATC	2 cut(s)	682, 743
SfcI	CTRYAG	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	602
SmiMI	CAYNNNNRTG	2 cut(s)	30, 48
SmlI	CTYRAG	3 cut(s)	165, 251, 602
SmoI	CTYRAG	3 cut(s)	165, 251, 602
Sse9I	AATT	7 cut(s)	232, 323, 332, 522, 629, 794, 801
SseBI	AGGCCT	1 cut(s)	1028
SsiI	CCGC	4 cut(s)	211, 484, 494, 695
SstI	GAGCTC	1 cut(s)	756
StuI	AGGCCT	1 cut(s)	1028
StyD4I	CCNGG	1 cut(s)	582
StyI	CCWWGG	1 cut(s)	516
TaaI	ACNGT	3 cut(s)	93, 558, 773
TaiI	ACGT	2 cut(s)	120, 849
TaqI	TCGA	4 cut(s)	336, 508, 603, 805
TasI	AATT	7 cut(s)	232, 323, 332, 522, 629, 794, 801
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	1 cut(s)	698
TfiI	GAWTC	1 cut(s)	433
TscAI	CASTG	1 cut(s)	274
TseI	GCWGC	5 cut(s)	400, 448, 640, 698, 894
TspDTI	ATGAA	3 cut(s)	425, 462, 524
TspRI	CASTG	1 cut(s)	274
XapI	RAATTY	4 cut(s)	232, 522, 629, 801
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.