Prupe.6G327000_v2.0.a1

Serine--tRNA

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
Physical Location & Seq
Reverse (-)
28703239 .. 28707419
4181 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G327000.1

Sequence Viewer

Length: 1344 bp
ATGTTGGACATCAATCTGTTTAGAGAAGAGAAGGGCAACAACCCCGAAATCATCCGCGAATCTCAACGCCGTCGTTTCAAGGCCGTCGAGATCGTCGACGAGGTCATCCAGCTCGACAAAGAATGGCGTCAGCGTCAATTCGAGCTCGAGAATCTTCGGAAAGAGTTCAACAAGATCAACAAGCGAGTTGCTCAACTAAGGATTGCTGGCGAGGATGCAACTGCCGTGATTAAGGACACAGAGGAAAATAAGAGGTTGGCGGCAGAGAAAGAAGTTGAAGTTAGAGAAGCTTTAACACAGTTGAATTCAAAATTGGAAGTCATTGGAAACCTTGTGCATGATTCGGTTCCCATCAGTAATGATGAGGAAAATAATGCTGTGATTAGATCATGGGGTGAGAAGCGAATGGAGCCAAAACTAAAAAATCATGTTGAGCTTGTTGAGCTTCTTGGGATCGCAGACTTGAAAAAAGGTGCTGAAGTGGCCGGGGGTAGAGGTTTTTACCTGAAAGGTGCTGGTGTACGCCTTAATCAAGCTCTGATAAACTTTGGTCTTGATTTTCTTGAGAAAAGGGGATATACAGAATTGCAGACTCCATTTTTTATGAGAAAAGATATCATGGCAAAGTGTGCTCAATTAGCACAATTTGATGAGGAACTTTACAAGGTAACCGGTGAAGGTGATGACAAATATCTGATTGCTACAGCTGAACAGCCACTTTGTTCATATCATATAGATGATTGGATTCATCCATCGCAGCTGCCCTTAAGATATGCTGGATACTCGTCTTGTTTCCGTAAAGAAGCTGGTTCACACGGTCGAGATACCTTGGGAATTTTTAGAGTTCATCAGTTTGAGAAAGTTGAACAGTTTTGTATTACAAGCCCAGATGGAAGTGATTCTTGGGAAATGCACGAGGAAATGATCAAAAACTCCGAGGATTTTTATAAATCGTTAAACCTCCCCTATCATGTAGTCGCAATCGTTTCTGGTGCTTTGAATGATGCCGCAGCAAAGAAGTATGATCTGGAAGCATGGTTCCCTGCATCTCAGACATACAGAGAATTGGTCTCTTGTTCAAACTGTACAGACTACCAGTCAAGAAAACTAGAAACTCGATATGGGCAGAAAAAGAGCAATGAGCAGACAAAGAAATATGTTCATTTATTGAACTCCACTCTTACCGCGACTGAGAGAACCTTGTGTTGCATTCTTGAGAACTACCAGAGGGAAGATGGTGTGGACATACCAGAAGTTTTACAACCTTTCATGGGCGGAAAGACCTTCCTACCTTTCAAGAACAAACCGGCCCCTGAAGTCAAAGGGAAGAAATCAAAGGCCTAA

Protein Analysis

448

Amino Acids

51.3

Weight (kDa)

6.1

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 948
AccI GTMKAC 1 cut(s) 96
AccII CGCG 2 cut(s) 57, 1187
AciI CCGC 5 cut(s) 55, 260, 1008, 1185, 1275
AclWI GGATC 1 cut(s) 461
AcoI YGGCCR 1 cut(s) 483
AcsI RAATTY 2 cut(s) 304, 834
AcuI CTGAAG 2 cut(s) 498, 1335
AcyI GRCGYC 1 cut(s) 127
AfaI GTAC 2 cut(s) 522, 1087
AfiI CCNNNNNNNGG 1 cut(s) 1271
AflII CTTAAG 1 cut(s) 766
AgeI ACCGGT 1 cut(s) 671
AhdI GACNNNNNGTC 1 cut(s) 1096
AjuI GAANNNNNNNTTGG 4 cut(s) 296, 328, 886, 918
AloI GAACNNNNNNTCC 2 cut(s) 1022, 1054
AluBI AGCT 9 cut(s) 112, 145, 290, 436, 445, 536, 707, 760, 806
AluI AGCT 9 cut(s) 112, 145, 290, 436, 445, 536, 707, 760, 806
Alw21I GWGCWC 2 cut(s) 147, 634
Alw26I GTCTC 1 cut(s) 1075
AlwI GGATC 1 cut(s) 461
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 4 cut(s) 81, 483, 1308, 1338
ApeKI GCWGC 3 cut(s) 757, 760, 1010
ApoI RAATTY 2 cut(s) 304, 834
AsiGI ACCGGT 1 cut(s) 671
Asp700I GAANNNNTTC 2 cut(s) 164, 898
AspS9I GGNCC 1 cut(s) 1309
AsuC2I CCSGG 1 cut(s) 487
AsuHPI GGTGA 3 cut(s) 407, 686, 692
AvaI CYCGRG 1 cut(s) 146
BanII GRGCYC 1 cut(s) 147
BauI CACGAG 1 cut(s) 914
Bbv12I GWGCWC 2 cut(s) 147, 634
BbvI GCAGC 3 cut(s) 747, 769, 1022
BccI CCATC 4 cut(s) 359, 760, 884, 1229
BceAI ACGGC 3 cut(s) 54, 68, 209
BciVI GTATCC 1 cut(s) 773
BclI TGATCA 1 cut(s) 924
BcnI CCSGG 1 cut(s) 487
BcoDI GTCTC 1 cut(s) 1075
BfaI CTAG 1 cut(s) 1109
BfmI CTRYAG 1 cut(s) 702
BfrI CTTAAG 1 cut(s) 766
BfuI GTATCC 1 cut(s) 773
BisI GCNGC 5 cut(s) 261, 758, 761, 1008, 1011
BlsI GCNGC 5 cut(s) 262, 759, 762, 1009, 1012
Bme1390I CCNGG 1 cut(s) 487
BmeRI GACNNNNNGTC 1 cut(s) 1096
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 1 cut(s) 1309
BmiI GGNNCC 4 cut(s) 348, 411, 1040, 1311
BmrFI CCNGG 1 cut(s) 487
BmsI GCATC 3 cut(s) 205, 994, 1055
BpuEI CTTGAG 2 cut(s) 584, 1235
BpuMI CCSGG 1 cut(s) 487
BsaHI GRCGYC 1 cut(s) 127
BsaI GGTCTC 1 cut(s) 1075
BsaJI CCNNGG 3 cut(s) 486, 828, 936
BsaWI WCCGGW 1 cut(s) 671
Bsc4I CCNNNNNNNGG 1 cut(s) 1271
Bse118I RCCGGY 2 cut(s) 671, 1306
Bse1I ACTGG 1 cut(s) 1096
Bse3DI GCAATG 1 cut(s) 1144
BseDI CCNNGG 3 cut(s) 486, 828, 936
BseGI GGATG 4 cut(s) 51, 105, 220, 748
BseLI CCNNNNNNNGG 1 cut(s) 1271
BseMI GCAATG 1 cut(s) 1144
BseMII CTCAG 2 cut(s) 1064, 1182
BseNI ACTGG 1 cut(s) 1096
BseXI GCAGC 3 cut(s) 747, 769, 1022
Bsh1236I CGCG 2 cut(s) 57, 1187
Bsh1285I CGRYCG 1 cut(s) 820
BshFI GGCC 4 cut(s) 83, 485, 1310, 1340
BshTI ACCGGT 1 cut(s) 671
BsiEI CGRYCG 1 cut(s) 820
BsiHKAI GWGCWC 2 cut(s) 147, 634
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 3 cut(s) 486, 672, 1307
BslI CCNNNNNNNGG 1 cut(s) 1271
BsmAI GTCTC 1 cut(s) 1075
BsmI GAATGC 1 cut(s) 1209
BsnI GGCC 4 cut(s) 83, 485, 1310, 1340
Bso31I GGTCTC 1 cut(s) 1075
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 147, 634
Bsp1407I TGTACA 1 cut(s) 1085
Bsp143I GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
BspACI CCGC 5 cut(s) 55, 260, 1008, 1185, 1275
BspANI GGCC 4 cut(s) 83, 485, 1310, 1340
BspCNI CTCAG 2 cut(s) 1063, 1183
BspFNI CGCG 2 cut(s) 57, 1187
BspLI GGNNCC 4 cut(s) 348, 411, 1040, 1311
BspPI GGATC 1 cut(s) 461
BspTI CTTAAG 1 cut(s) 766
BspTNI GGTCTC 1 cut(s) 1075
BsrDI GCAATG 1 cut(s) 1144
BsrFI RCCGGY 2 cut(s) 671, 1306
BsrGI TGTACA 1 cut(s) 1085
BsrI ACTGG 1 cut(s) 1096
BssAI RCCGGY 2 cut(s) 671, 1306
BssECI CCNNGG 3 cut(s) 486, 828, 936
BssMI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
BssNI GRCGYC 1 cut(s) 127
BssSI CACGAG 1 cut(s) 914
BssT1I CCWWGG 1 cut(s) 828
Bst2BI CACGAG 1 cut(s) 914
Bst4CI ACNGT 4 cut(s) 300, 818, 870, 1085
Bst6I CTCTTC 1 cut(s) 21
BstACI GRCGYC 1 cut(s) 127
BstAFI CTTAAG 1 cut(s) 766
BstAPI GCANNNNNTGC 1 cut(s) 629
BstAUI TGTACA 1 cut(s) 1085
BstC8I GCNNGC 1 cut(s) 208
BstDEI CTNAG 3 cut(s) 197, 1050, 1191
BstEII GGTNACC 1 cut(s) 667
BstF5I GGATG 4 cut(s) 51, 105, 220, 748
BstFNI CGCG 2 cut(s) 57, 1187
BstKTI GATC 6 cut(s) 93, 177, 389, 456, 927, 1027
BstMAI GTCTC 1 cut(s) 1075
BstMBI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
BstMCI CGRYCG 1 cut(s) 820
BstMWI GCNNNNNNNGC 5 cut(s) 409, 442, 482, 629, 638
BstPI GGTNACC 1 cut(s) 667
BstSCI CCNGG 1 cut(s) 485
BstSFI CTRYAG 1 cut(s) 702
BstUI CGCG 2 cut(s) 57, 1187
BstV1I GCAGC 3 cut(s) 747, 769, 1022
BsuI GTATCC 1 cut(s) 773
BsuRI GGCC 4 cut(s) 83, 485, 1310, 1340
BtgZI GCGATG 1 cut(s) 738
BtsCI GGATG 4 cut(s) 51, 105, 220, 748
Cac8I GCNNGC 1 cut(s) 208
Cfr10I RCCGGY 2 cut(s) 671, 1306
Cfr13I GGNCC 1 cut(s) 1309
CseI GACGC 2 cut(s) 116, 122
Csp6I GTAC 2 cut(s) 521, 1086
CspAI ACCGGT 1 cut(s) 671
CviAII CATG 7 cut(s) 338, 390, 428, 619, 971, 1035, 1270
CviQI GTAC 2 cut(s) 521, 1086
DdeI CTNAG 3 cut(s) 197, 1050, 1191
DpnI GATC 6 cut(s) 92, 176, 388, 455, 926, 1026
DpnII GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
DriI GACNNNNNGTC 1 cut(s) 1096
EaeI YGGCCR 1 cut(s) 483
Eam1104I CTCTTC 1 cut(s) 21
Eam1105I GACNNNNNGTC 1 cut(s) 1096
EarI CTCTTC 1 cut(s) 21
EciI GGCGGA 1 cut(s) 1290
Ecl136II GAGCTC 1 cut(s) 145
Eco130I CCWWGG 1 cut(s) 828
Eco147I AGGCCT 1 cut(s) 1340
Eco24I GRGCYC 1 cut(s) 147
Eco31I GGTCTC 1 cut(s) 1075
Eco32I GATATC 1 cut(s) 616
Eco53kI GAGCTC 1 cut(s) 145
Eco57I CTGAAG 2 cut(s) 498, 1335
Eco88I CYCGRG 1 cut(s) 146
Eco91I GGTNACC 1 cut(s) 667
EcoICRI GAGCTC 1 cut(s) 145
EcoO65I GGTNACC 1 cut(s) 667
EcoRI GAATTC 1 cut(s) 304
EcoRV GATATC 1 cut(s) 616
EcoT14I CCWWGG 1 cut(s) 828
EcoT38I GRGCYC 1 cut(s) 147
ErhI CCWWGG 1 cut(s) 828
FaeI CATG 7 cut(s) 341, 393, 431, 622, 974, 1038, 1273
FalI AAGNNNNNCTT 2 cut(s) 886, 918
FatI CATG 7 cut(s) 337, 389, 427, 618, 970, 1034, 1269
FbaI TGATCA 1 cut(s) 924
FblI GTMKAC 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 261, 758, 761, 1008, 1011
FokI GGATG 4 cut(s) 38, 92, 227, 735
FriOI GRGCYC 1 cut(s) 147
Fsp4HI GCNGC 5 cut(s) 261, 758, 761, 1008, 1011
FspBI CTAG 1 cut(s) 1109
GluI GCNGC 5 cut(s) 261, 758, 761, 1008, 1011
HaeIII GGCC 4 cut(s) 83, 485, 1310, 1340
HapII CCGG 3 cut(s) 486, 672, 1307
HgaI GACGC 2 cut(s) 116, 122
Hin1I GRCGYC 1 cut(s) 127
Hin1II CATG 7 cut(s) 341, 393, 431, 622, 974, 1038, 1273
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 6 cut(s) 59, 151, 341, 592, 745, 899
HpaII CCGG 3 cut(s) 486, 672, 1307
HphI GGTGA 3 cut(s) 407, 686, 692
Hpy166II GTNNAC 4 cut(s) 97, 521, 812, 1243
Hpy188I TCNGA 5 cut(s) 159, 540, 696, 937, 1053
Hpy188III TCNNGA 9 cut(s) 88, 148, 554, 563, 821, 1028, 1101, 1214, 1297
Hpy8I GTNNAC 4 cut(s) 97, 521, 812, 1243
Hpy99I CGWCG 4 cut(s) 75, 89, 98, 101
HpyAV CCTTC 3 cut(s) 25, 671, 1294
HpyCH4III ACNGT 4 cut(s) 300, 818, 870, 1085
HpyCH4V TGCA 6 cut(s) 218, 337, 589, 913, 1046, 1209
HpyF10VI GCNNNNNNNGC 5 cut(s) 409, 442, 482, 629, 638
HpyF3I CTNAG 3 cut(s) 197, 1050, 1191
Hsp92I GRCGYC 1 cut(s) 127
Hsp92II CATG 7 cut(s) 341, 393, 431, 622, 974, 1038, 1273
Ksp22I TGATCA 1 cut(s) 924
Kzo9I GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
LmnI GCTCC 1 cut(s) 409
Lsp1109I GCAGC 3 cut(s) 747, 769, 1022
LweI GCATC 3 cut(s) 205, 994, 1055
MaeI CTAG 1 cut(s) 1109
MaeIII GTNAC 1 cut(s) 667
MalI GATC 6 cut(s) 92, 176, 388, 455, 926, 1026
MboI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
MboII GAAGA 4 cut(s) 38, 146, 1244, 1339
MhlI GDGCHC 2 cut(s) 147, 634
MluCI AATT 8 cut(s) 137, 304, 311, 584, 635, 644, 834, 1064
MlyI GAGTC 1 cut(s) 586
MroXI GAANNNNTTC 2 cut(s) 164, 898
MseI TTAA 5 cut(s) 231, 293, 528, 767, 956
MslI CAYNNNNRTG 1 cut(s) 735
MspA1I CMGCKG 2 cut(s) 707, 760
MspCI CTTAAG 1 cut(s) 766
MspI CCGG 3 cut(s) 486, 672, 1307
MspR9I CCNGG 1 cut(s) 487
Mva1269I GAATGC 1 cut(s) 1209
MvnI CGCG 2 cut(s) 57, 1187
MwoI GCNNNNNNNGC 5 cut(s) 409, 442, 482, 629, 638
NciI CCSGG 1 cut(s) 487
NdeII GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
NlaIII CATG 7 cut(s) 341, 393, 431, 622, 974, 1038, 1273
NlaIV GGNNCC 4 cut(s) 348, 411, 1040, 1311
PaeR7I CTCGAG 1 cut(s) 146
PceI AGGCCT 1 cut(s) 1340
PcsI WCGNNNNNNNCGW 1 cut(s) 93
PctI GAATGC 1 cut(s) 1209
PdmI GAANNNNTTC 2 cut(s) 164, 898
PfeI GAWTC 5 cut(s) 59, 151, 341, 745, 899
PflFI GACNNNGTC 1 cut(s) 101
PinAI ACCGGT 1 cut(s) 671
PkrI GCNGC 5 cut(s) 262, 759, 762, 1009, 1012
PleI GAGTC 1 cut(s) 586
PpsI GAGTC 1 cut(s) 586
PsiI TTATAA 1 cut(s) 948
Psp124BI GAGCTC 1 cut(s) 147
PspEI GGTNACC 1 cut(s) 667
PspN4I GGNNCC 4 cut(s) 348, 411, 1040, 1311
PspPI GGNCC 1 cut(s) 1309
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 2 cut(s) 707, 760
RsaI GTAC 2 cut(s) 522, 1087
RsaNI GTAC 2 cut(s) 521, 1086
RseI CAYNNNNRTG 1 cut(s) 735
SacI GAGCTC 1 cut(s) 147
SalI GTCGAC 1 cut(s) 95
SaqAI TTAA 5 cut(s) 231, 293, 528, 767, 956
SatI GCNGC 5 cut(s) 261, 758, 761, 1008, 1011
Sau3AI GATC 6 cut(s) 90, 174, 386, 453, 924, 1024
Sau96I GGNCC 1 cut(s) 1309
SchI GAGTC 1 cut(s) 586
ScrFI CCNGG 1 cut(s) 487
SduI GDGCHC 2 cut(s) 147, 634
SfaNI GCATC 3 cut(s) 205, 994, 1055
SfcI CTRYAG 1 cut(s) 702
Sfr274I CTCGAG 1 cut(s) 146
SgrDI CGTCGACG 1 cut(s) 95
SlaI CTCGAG 1 cut(s) 146
SmiMI CAYNNNNRTG 1 cut(s) 735
SmlI CTYRAG 4 cut(s) 146, 563, 766, 1214
SmoI CTYRAG 4 cut(s) 146, 563, 766, 1214
Sse9I AATT 8 cut(s) 137, 304, 311, 584, 635, 644, 834, 1064
SseBI AGGCCT 1 cut(s) 1340
SsiI CCGC 5 cut(s) 55, 260, 1008, 1185, 1275
SspMI CTAG 1 cut(s) 1109
SstI GAGCTC 1 cut(s) 147
StuI AGGCCT 1 cut(s) 1340
StyD4I CCNGG 1 cut(s) 485
StyI CCWWGG 1 cut(s) 828
TaaI ACNGT 4 cut(s) 300, 818, 870, 1085
TaqI TCGA 7 cut(s) 87, 96, 114, 141, 147, 820, 1117
TasI AATT 8 cut(s) 137, 304, 311, 584, 635, 644, 834, 1064
TatI WGTACW 1 cut(s) 1085
TauI GCSGC 2 cut(s) 263, 1010
TfiI GAWTC 5 cut(s) 59, 151, 341, 745, 899
Tru1I TTAA 5 cut(s) 231, 293, 528, 767, 956
Tru9I TTAA 5 cut(s) 231, 293, 528, 767, 956
TseI GCWGC 3 cut(s) 757, 760, 1010
TspDTI ATGAA 5 cut(s) 714, 737, 836, 1151, 1258
TspGWI ACGGA 1 cut(s) 785
Tth111I GACNNNGTC 1 cut(s) 101
Vha464I CTTAAG 1 cut(s) 766
XapI RAATTY 2 cut(s) 304, 834
XcmI CCANNNNNNNNNTGG 1 cut(s) 1232
XhoI CTCGAG 1 cut(s) 146
XmiI GTMKAC 1 cut(s) 96
XmnI GAANNNNTTC 2 cut(s) 164, 898
XspI CTAG 1 cut(s) 1109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.