AT5G38900

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0005301
Physical Location & Seq
Reverse (-)
15573505 .. 15575712
2208 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G38900.2

Sequence Viewer

Length: 654 bp
ATGGCTGAGTCTGCAAGCAACACCGCTTCAAAAAAGCTCATTCAAATCGACGTAAGCTCGGATTCGGTGTGTCCATGGTGCTTTGTAGGAAAGAAGAATCTTGACAAAGCTATTGAAGCATCTAAAGATCAATACAACTTCGAGATTCGATGGCGTCCGTTTTTCCTTGATCCATCTGCACCTAAAGAAGGTGTGAGTAAGAAAGAGTTTTATCTACAGAAATATGGAAACAGATATCAAGGAATGTTTGCAAGAATGTCCGAGGTCTTTAAAGGTCTTGGCTTAGAGTTTGACACAGCTGGTCTCACAGGAAACAGTCTGGATAGTCATAGACTTATACATTATACCGGTAAACAAGCGCCGGAGAAGCAACATACACTTGTTGAGGAACTGTTTATCGGTTACTTTACGCAGGGAAAGTTCATCGGTGATAGAGAGTTTTTGGTAGAGACGGCTAACAAGGTTGGGATAGAAGGAGCAGAAGAATTCCTCTCAGACCCCAACAATGGAGTTACAGAGGTGAAAGAAGAACTGGCAAAGTATTCGAAAAATATCACCGGAGTTCCAAATTACACTATCAATGGGAAGGTGAAGCTGAGTGGTGCGCAACCGCCCGAGACATTCCAGAGTGCGTTTAAAGCGGCCTCGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

217

Amino Acids

24.16

Weight (kDa)

6.34

Isoelectric Point (pI)

37.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSBA PF01323 34 - 231 1.3e-45 DSBA-like thioredoxin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 606
AciI CCGC 3 cut(s) 24, 611, 641
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 1 cut(s) 485
AcyI GRCGYC 1 cut(s) 154
AfiI CCNNNNNNNGG 2 cut(s) 188, 506
AgeI ACCGGT 1 cut(s) 347
AgsI TTSAA 3 cut(s) 30, 44, 116
AluBI AGCT 5 cut(s) 37, 57, 110, 299, 595
AluI AGCT 5 cut(s) 37, 57, 110, 299, 595
Alw26I GTCTC 3 cut(s) 308, 443, 611
AlwI GGATC 1 cut(s) 164
Ama87I CYCGRG 1 cut(s) 614
AoxI GGCC 1 cut(s) 642
ApoI RAATTY 1 cut(s) 485
AsiGI ACCGGT 1 cut(s) 347
AspLEI GCGC 2 cut(s) 361, 607
AsuHPI GGTGA 4 cut(s) 440, 532, 547, 601
AsuII TTCGAA 1 cut(s) 545
AvaI CYCGRG 1 cut(s) 614
BccI CCATC 2 cut(s) 144, 181
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 525, 559
BcoDI GTCTC 3 cut(s) 308, 443, 611
BfmI CTRYAG 1 cut(s) 215
BfoI RGCGCY 1 cut(s) 362
BisI GCNGC 1 cut(s) 642
BlsI GCNGC 1 cut(s) 643
BmeT110I CYCGRG 1 cut(s) 614
BmsI GCATC 1 cut(s) 128
Bpu14I TTCGAA 1 cut(s) 545
BsaHI GRCGYC 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 74, 261, 645
BsaWI WCCGGW 2 cut(s) 347, 557
Bsc4I CCNNNNNNNGG 2 cut(s) 188, 506
Bse118I RCCGGY 1 cut(s) 347
Bse1I ACTGG 1 cut(s) 537
BseDI CCNNGG 3 cut(s) 74, 261, 645
BseLI CCNNNNNNNGG 2 cut(s) 188, 506
BseMII CTCAG 2 cut(s) 507, 587
BseNI ACTGG 1 cut(s) 537
BsgI GTGCAG 1 cut(s) 162
BshFI GGCC 1 cut(s) 644
BshTI ACCGGT 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 614
BsiSI CCGG 3 cut(s) 348, 362, 558
BslI CCNNNNNNNGG 2 cut(s) 188, 506
BsmAI GTCTC 3 cut(s) 308, 443, 611
BsmBI CGTCTC 1 cut(s) 443
BsnI GGCC 1 cut(s) 644
Bso31I GGTCTC 1 cut(s) 308
BsoBI CYCGRG 1 cut(s) 614
Bsp119I TTCGAA 1 cut(s) 545
Bsp143I GATC 2 cut(s) 127, 169
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 3 cut(s) 24, 611, 641
BspANI GGCC 1 cut(s) 644
BspCNI CTCAG 2 cut(s) 506, 588
BspPI GGATC 1 cut(s) 164
BspT104I TTCGAA 1 cut(s) 545
BspTNI GGTCTC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 347
BsrI ACTGG 1 cut(s) 537
BssAI RCCGGY 1 cut(s) 347
BssECI CCNNGG 3 cut(s) 74, 261, 645
BssMI GATC 2 cut(s) 127, 169
BssNI GRCGYC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 74
Bst4CI ACNGT 2 cut(s) 317, 393
BstACI GRCGYC 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 545
BstC8I GCNNGC 1 cut(s) 16
BstDEI CTNAG 4 cut(s) 6, 283, 493, 596
BstDSI CCRYGG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 361, 607
BstKTI GATC 2 cut(s) 130, 172
BstMAI GTCTC 3 cut(s) 308, 443, 611
BstMBI GATC 2 cut(s) 127, 169
BstMWI GCNNNNNNNGC 5 cut(s) 11, 116, 367, 638, 647
BstSFI CTRYAG 1 cut(s) 215
BsuRI GGCC 1 cut(s) 644
BtgI CCRYGG 1 cut(s) 74
Cac8I GCNNGC 1 cut(s) 16
CfoI GCGC 2 cut(s) 361, 607
Cfr10I RCCGGY 1 cut(s) 347
CseI GACGC 1 cut(s) 143
CspAI ACCGGT 1 cut(s) 347
CviAII CATG 1 cut(s) 75
DdeI CTNAG 4 cut(s) 6, 283, 493, 596
DpnI GATC 2 cut(s) 129, 171
DpnII GATC 2 cut(s) 127, 169
DraI TTTAAA 2 cut(s) 271, 637
Eco130I CCWWGG 1 cut(s) 74
Eco31I GGTCTC 1 cut(s) 308
Eco32I GATATC 1 cut(s) 236
Eco88I CYCGRG 1 cut(s) 614
EcoNI CCTNNNNNAGG 1 cut(s) 186
EcoRI GAATTC 1 cut(s) 485
EcoRV GATATC 1 cut(s) 236
EcoT14I CCWWGG 1 cut(s) 74
ErhI CCWWGG 1 cut(s) 74
Esp3I CGTCTC 1 cut(s) 443
FaeI CATG 1 cut(s) 78
FaiI YATR 6 cut(s) 76, 225, 330, 338, 345, 375
FatI CATG 1 cut(s) 74
Fnu4HI GCNGC 1 cut(s) 642
Fsp4HI GCNGC 1 cut(s) 642
FspI TGCGCA 1 cut(s) 606
GlaI GCGC 2 cut(s) 360, 606
GluI GCNGC 1 cut(s) 642
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 1 cut(s) 644
HapII CCGG 3 cut(s) 348, 362, 558
HgaI GACGC 1 cut(s) 143
HhaI GCGC 2 cut(s) 361, 607
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 1 cut(s) 78
Hin6I GCGC 2 cut(s) 359, 605
HinP1I GCGC 2 cut(s) 359, 605
HinfI GANTC 4 cut(s) 8, 62, 97, 145
HpaII CCGG 3 cut(s) 348, 362, 558
HphI GGTGA 4 cut(s) 440, 532, 547, 601
Hpy166II GTNNAC 1 cut(s) 353
Hpy188I TCNGA 3 cut(s) 61, 262, 496
Hpy188III TCNNGA 4 cut(s) 101, 142, 320, 625
Hpy8I GTNNAC 1 cut(s) 353
Hpy99I CGWCG 1 cut(s) 53
HpyAV CCTTC 3 cut(s) 182, 467, 580
HpyCH4III ACNGT 2 cut(s) 317, 393
HpyCH4IV ACGT 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 14, 179, 251
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 116, 367, 638, 647
HpyF3I CTNAG 4 cut(s) 6, 283, 493, 596
HpySE526I ACGT 1 cut(s) 51
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 1 cut(s) 78
HspAI GCGC 2 cut(s) 359, 605
Kzo9I GATC 2 cut(s) 127, 169
LmnI GCTCC 1 cut(s) 476
LpnPI CCDG 9 cut(s) 285, 294, 305, 361, 375, 398, 518, 571, 638
LweI GCATC 1 cut(s) 128
MaeII ACGT 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 401, 511
MalI GATC 2 cut(s) 129, 171
MboI GATC 2 cut(s) 127, 169
MboII GAAGA 3 cut(s) 106, 494, 539
MluCI AATT 2 cut(s) 485, 568
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 4 cut(s) 256, 379, 500, 511
MseI TTAA 2 cut(s) 270, 636
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 3 cut(s) 348, 362, 558
MwoI GCNNNNNNNGC 5 cut(s) 11, 116, 367, 638, 647
NcoI CCATGG 1 cut(s) 74
NdeII GATC 2 cut(s) 127, 169
NlaIII CATG 1 cut(s) 78
NmeAIII GCCGAG 1 cut(s) 626
NsbI TGCGCA 1 cut(s) 606
NspV TTCGAA 1 cut(s) 545
PfeI GAWTC 3 cut(s) 62, 97, 145
PinAI ACCGGT 1 cut(s) 347
PkrI GCNGC 1 cut(s) 643
PleI GAGTC 1 cut(s) 16
PpsI GAGTC 1 cut(s) 16
PvuII CAGCTG 1 cut(s) 299
SaqAI TTAA 2 cut(s) 270, 636
SatI GCNGC 1 cut(s) 642
Sau3AI GATC 2 cut(s) 127, 169
SchI GAGTC 1 cut(s) 17
SfaNI GCATC 1 cut(s) 128
SfcI CTRYAG 1 cut(s) 215
SfuI TTCGAA 1 cut(s) 545
Sse9I AATT 2 cut(s) 485, 568
SsiI CCGC 3 cut(s) 24, 611, 641
StyI CCWWGG 1 cut(s) 74
TaaI ACNGT 2 cut(s) 317, 393
TaiI ACGT 1 cut(s) 54
TaqI TCGA 4 cut(s) 48, 141, 148, 545
TasI AATT 2 cut(s) 485, 568
TauI GCSGC 1 cut(s) 644
TfiI GAWTC 3 cut(s) 62, 97, 145
Tru1I TTAA 2 cut(s) 270, 636
Tru9I TTAA 2 cut(s) 270, 636
TspDTI ATGAA 1 cut(s) 412
TspGWI ACGGA 1 cut(s) 147
XagI CCTNNNNNAGG 1 cut(s) 186
XapI RAATTY 1 cut(s) 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.