Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0005301

Physical Location & Seq

Genomic Coordinates Forward (+)

110373 .. 112431

Gene Structure 2059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g00140.8

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGCCACTCAGGATTATCTCTCGGAAAAGTCCGCAGAGCATCTATAAAGCCAGTACGTGGGAGTGCGATTGCCTTCTCTTTCTCCAAAGACGCAAGCTTTCGATAAAATTACCGTCTTTACAGACAGACAGATACATGGCTGGTGTGAAAAAGCTCATCCAAATCGACATCGTTTCGGATACGGTATGCCCATGGTGCTTTGTGGGCAAGAGAAATCTTGAAAAAGCTTTCGAGGCATCTCGTGATCGATTCAACTTTGAGGTTAGATGGCATCCATTCCAACTTAATCCCAATGCGCCTAAAGAAGGCGTTGATAAGAGAAGTTATTACGAGGAAAAATTCGGGTCTAGTAGGTCGAAACAAATGGAGGCTCGGATGCAAGAGATTTTCAGAAGCCACGGCCTCGAATATAACCTGTCCGGACTCACGGGAAGTACTCTAGATAGCCACAGGCTTATCTATTTTGCTGGGACTCAAGGGCATGATAAGCAACACGATCTTGTGGGTGAACTGTTTCTAGGATACTTCACACAGGCAAAATACATCGGGGACAGGGAATATCTTCTGCAAAGTGCTCGAAAGGTCGGAGTAGAAGGGGCGGCAGAGTTTCTTGAAGACCCCAACAATGGGCTCAATGAGGTCAATGAAGAACTCAAGAAGTACTCAAGAAATATCAATGGAGTTCCACATTTTCTGATTAACAACGGAAAGCACGCGTTAAGTGGCGGTCAGCCACCTGAGGTGTTCTTGAGAGCTTTTGAAGCAGCTACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSBA

Protein Analysis

259

Amino Acids

29.6

Weight (kDa)

9.04

Isoelectric Point (pI)

48.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38900 AT5G38900
fragaria_vesca	FvH4_6g46390 FvH4_6g46390 FvH4_6g46390 FvH4_6g46390
malus_domestica	MD09G1074300.v1.1 MD17G1065700.v1.1
prunus_persica	Prupe.3G249000_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1
pyrus_communis	pycom09g00140 pycom17g06590
rosa_chinensis	RchiOBHm_Chr2g0164921
rosa_laevigata	RLG00000021497
rosa_multiflora	Rmu_co8477167.1_g000001 Rmu_sc0001097.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086210 Rroxscaffold_5G00335800
rosa_rugosa	Rorug02G0511200 Rorug02G0511300
rosa_samantha	Rh2AG579500 Rh2BG590500 Rh2CG561200 Rh2DG600900
rosa_wichuraiana	Rw2G048100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	57
AccII	CGCG	1 cut(s)	716
AccIII	TCCGGA	1 cut(s)	419
AciI	CCGC	3 cut(s)	32, 599, 726
AcsI	RAATTY	1 cut(s)	338
AfaI	GTAC	3 cut(s)	55, 436, 662
AfiI	CCNNNNNNNGG	4 cut(s)	57, 305, 626, 627
AflIII	ACRYGT	1 cut(s)	714
AgsI	TTSAA	4 cut(s)	221, 253, 614, 761
AluBI	AGCT	5 cut(s)	97, 154, 227, 755, 767
AluI	AGCT	5 cut(s)	97, 154, 227, 755, 767
Alw21I	GWGCWC	1 cut(s)	577
Aor13HI	TCCGGA	1 cut(s)	419
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	764
ApoI	RAATTY	1 cut(s)	338
Asp700I	GAANNNNTTC	2 cut(s)	513, 561
AspLEI	GCGC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	518
AxyI	CCTNAGG	1 cut(s)	738
BanII	GRGCYC	1 cut(s)	633
BauI	CACGAG	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	621
Bbv12I	GWGCWC	1 cut(s)	577
BccI	CCATC	1 cut(s)	261
BceAI	ACGGC	1 cut(s)	415
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciVI	GTATCC	2 cut(s)	172, 515
BfaI	CTAG	3 cut(s)	348, 440, 518
BfuI	GTATCC	2 cut(s)	172, 515
BisI	GCNGC	2 cut(s)	600, 765
BlsI	GCNGC	2 cut(s)	601, 766
BmcAI	AGTACT	2 cut(s)	436, 662
BmsI	GCATC	4 cut(s)	48, 245, 280, 366
BpiI	GAAGAC	1 cut(s)	621
BpuEI	CTTGAG	4 cut(s)	459, 638, 649, 769
Bsa29I	ATCGAT	1 cut(s)	247
BsaAI	YACGTR	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	191, 397
BsaWI	WCCGGW	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	4 cut(s)	57, 305, 626, 627
Bse1I	ACTGG	1 cut(s)	51
Bse21I	CCTNAGG	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	247
BseDI	CCNNGG	2 cut(s)	191, 397
BseGI	GGATG	3 cut(s)	156, 271, 381
BseLI	CCNNNNNNNGG	4 cut(s)	57, 305, 626, 627
BseMII	CTCAG	2 cut(s)	22, 729
BseNI	ACTGG	1 cut(s)	51
BseYI	CCCAGC	1 cut(s)	467
Bsh1236I	CGCG	1 cut(s)	716
BshFI	GGCC	1 cut(s)	402
BshVI	ATCGAT	1 cut(s)	247
BsiHKAI	GWGCWC	1 cut(s)	577
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	2 cut(s)	484, 563
BslI	CCNNNNNNNGG	4 cut(s)	57, 305, 626, 627
BsmFI	GGGAC	2 cut(s)	484, 563
BsnI	GGCC	1 cut(s)	402
Bsp1286I	GDGCHC	2 cut(s)	577, 633
Bsp13I	TCCGGA	1 cut(s)	419
Bsp143I	GATC	2 cut(s)	244, 496
Bsp19I	CCATGG	1 cut(s)	191
BspACI	CCGC	3 cut(s)	32, 599, 726
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	21, 730
BspDI	ATCGAT	1 cut(s)	247
BspEI	TCCGGA	1 cut(s)	419
BspFNI	CGCG	1 cut(s)	716
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	2 cut(s)	191, 397
BssMI	GATC	2 cut(s)	244, 496
BssSI	CACGAG	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	240
Bst4CI	ACNGT	3 cut(s)	114, 184, 513
BstBAI	YACGTR	1 cut(s)	57
BstC8I	GCNNGC	2 cut(s)	95, 714
BstDEI	CTNAG	2 cut(s)	8, 738
BstDSI	CCRYGG	2 cut(s)	191, 397
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	3 cut(s)	156, 271, 381
BstFNI	CGCG	1 cut(s)	716
BstHHI	GCGC	1 cut(s)	298
BstKTI	GATC	2 cut(s)	247, 499
BstMBI	GATC	2 cut(s)	244, 496
BstMWI	GCNNNNNNNGC	5 cut(s)	195, 204, 233, 487, 761
BstUI	CGCG	1 cut(s)	716
BstV2I	GAAGAC	1 cut(s)	621
Bsu15I	ATCGAT	1 cut(s)	247
Bsu36I	CCTNAGG	1 cut(s)	738
BsuI	GTATCC	2 cut(s)	172, 515
BsuRI	GGCC	1 cut(s)	402
BsuTUI	ATCGAT	1 cut(s)	247
BtgI	CCRYGG	2 cut(s)	191, 397
BtsCI	GGATG	3 cut(s)	156, 271, 381
Cac8I	GCNNGC	2 cut(s)	95, 714
CfoI	GCGC	1 cut(s)	298
ClaI	ATCGAT	1 cut(s)	247
CseI	GACGC	1 cut(s)	99
Csp6I	GTAC	3 cut(s)	54, 435, 661
CviAII	CATG	3 cut(s)	136, 192, 482
CviQI	GTAC	3 cut(s)	54, 435, 661
DdeI	CTNAG	2 cut(s)	8, 738
DpnI	GATC	2 cut(s)	246, 498
DpnII	GATC	2 cut(s)	244, 496
Eco130I	CCWWGG	1 cut(s)	191
Eco24I	GRGCYC	1 cut(s)	633
Eco81I	CCTNAGG	1 cut(s)	738
EcoNI	CCTNNNNNAGG	1 cut(s)	303
EcoT14I	CCWWGG	1 cut(s)	191
EcoT38I	GRGCYC	1 cut(s)	633
ErhI	CCWWGG	1 cut(s)	191
FaeI	CATG	3 cut(s)	139, 195, 485
FaiI	YATR	6 cut(s)	45, 137, 187, 193, 411, 483
FaqI	GGGAC	2 cut(s)	484, 563
FatI	CATG	3 cut(s)	135, 191, 481
Fnu4HI	GCNGC	2 cut(s)	600, 765
FokI	GGATG	3 cut(s)	143, 258, 388
FriOI	GRGCYC	1 cut(s)	633
Fsp4HI	GCNGC	2 cut(s)	600, 765
FspBI	CTAG	3 cut(s)	348, 440, 518
GlaI	GCGC	1 cut(s)	297
GluI	GCNGC	2 cut(s)	600, 765
GsaI	CCCAGC	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	1 cut(s)	420
HgaI	GACGC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	298
Hin1II	CATG	3 cut(s)	139, 195, 485
Hin6I	GCGC	1 cut(s)	296
HinP1I	GCGC	1 cut(s)	296
HindIII	AAGCTT	2 cut(s)	95, 225
HinfI	GANTC	3 cut(s)	249, 423, 472
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	509
Hpy188I	TCNGA	6 cut(s)	24, 178, 375, 392, 587, 696
Hpy188III	TCNNGA	9 cut(s)	10, 218, 242, 420, 440, 611, 655, 666, 748
Hpy8I	GTNNAC	1 cut(s)	509
HpyAV	CCTTC	3 cut(s)	83, 299, 587
HpyCH4III	ACNGT	3 cut(s)	114, 184, 513
HpyCH4IV	ACGT	1 cut(s)	56
HpyCH4V	TGCA	2 cut(s)	379, 568
HpyF10VI	GCNNNNNNNGC	5 cut(s)	195, 204, 233, 487, 761
HpyF3I	CTNAG	2 cut(s)	8, 738
HpySE526I	ACGT	1 cut(s)	56
Hsp92II	CATG	3 cut(s)	139, 195, 485
HspAI	GCGC	1 cut(s)	296
Kpn2I	TCCGGA	1 cut(s)	419
Kzo9I	GATC	2 cut(s)	244, 496
LpnPI	CCDG	9 cut(s)	64, 126, 428, 433, 436, 453, 518, 538, 750
LweI	GCATC	4 cut(s)	48, 245, 280, 366
MaeI	CTAG	3 cut(s)	348, 440, 518
MaeII	ACGT	1 cut(s)	56
MalI	GATC	2 cut(s)	246, 498
MboI	GATC	2 cut(s)	244, 496
MboII	GAAGA	3 cut(s)	554, 626, 659
MhlI	GDGCHC	2 cut(s)	577, 633
MluCI	AATT	2 cut(s)	107, 338
MluI	ACGCGT	1 cut(s)	714
MlyI	GAGTC	2 cut(s)	417, 466
MmeI	TCCRAC	2 cut(s)	304, 565
MnlI	CCTC	7 cut(s)	226, 253, 325, 361, 413, 631, 733
MroI	TCCGGA	1 cut(s)	419
MroXI	GAANNNNTTC	2 cut(s)	513, 561
MseI	TTAA	3 cut(s)	285, 699, 719
MspI	CCGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	716
MwoI	GCNNNNNNNGC	5 cut(s)	195, 204, 233, 487, 761
NcoI	CCATGG	1 cut(s)	191
NdeII	GATC	2 cut(s)	244, 496
NlaIII	CATG	3 cut(s)	139, 195, 485
PdmI	GAANNNNTTC	2 cut(s)	513, 561
PfeI	GAWTC	1 cut(s)	249
PflMI	CCANNNNNTGG	1 cut(s)	57
PkrI	GCNGC	2 cut(s)	601, 766
PleI	GAGTC	2 cut(s)	417, 466
PpsI	GAGTC	2 cut(s)	417, 466
Ppu21I	YACGTR	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	467
RsaI	GTAC	3 cut(s)	55, 436, 662
RsaNI	GTAC	3 cut(s)	54, 435, 661
SaqAI	TTAA	3 cut(s)	285, 699, 719
SatI	GCNGC	2 cut(s)	600, 765
Sau3AI	GATC	2 cut(s)	244, 496
ScaI	AGTACT	2 cut(s)	436, 662
SchI	GAGTC	2 cut(s)	417, 466
SduI	GDGCHC	2 cut(s)	577, 633
SfaNI	GCATC	4 cut(s)	48, 245, 280, 366
SmlI	CTYRAG	4 cut(s)	474, 653, 664, 748
SmoI	CTYRAG	4 cut(s)	474, 653, 664, 748
Sse9I	AATT	2 cut(s)	107, 338
SsiI	CCGC	3 cut(s)	32, 599, 726
SspMI	CTAG	3 cut(s)	348, 440, 518
StyI	CCWWGG	1 cut(s)	191
TaaI	ACNGT	3 cut(s)	114, 184, 513
TaiI	ACGT	1 cut(s)	59
TaqI	TCGA	7 cut(s)	101, 165, 231, 247, 356, 405, 577
TasI	AATT	2 cut(s)	107, 338
TatI	WGTACW	2 cut(s)	434, 660
TauI	GCSGC	1 cut(s)	602
TfiI	GAWTC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	285, 699, 719
Tru9I	TTAA	3 cut(s)	285, 699, 719
TseI	GCWGC	1 cut(s)	764
TspDTI	ATGAA	1 cut(s)	660
TspGWI	ACGGA	1 cut(s)	720
Van91I	CCANNNNNTGG	1 cut(s)	57
XagI	CCTNNNNNAGG	1 cut(s)	303
XapI	RAATTY	1 cut(s)	338
XbaI	TCTAGA	1 cut(s)	439
XmnI	GAANNNNTTC	2 cut(s)	513, 561
XspI	CTAG	3 cut(s)	348, 440, 518
ZrmI	AGTACT	2 cut(s)	436, 662

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.