Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005301

Physical Location & Seq

Genomic Coordinates Reverse (-)

23936631 .. 23939253

Gene Structure 2623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G249000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGGCTGGAACCAAGAAAAAGTTTGTGGAAATTGATATAATTGCAGACACTGTGTGTCCATGGTGCTTTGTGGGCAAAAGAAACCTTGACAAAGCTCTGGAGGAAGGTAATGATCGATACGAGTTTGAGCTCAGATGGCATCCATTTCAAATTGATCCTGAAATCCCTAAAGAAGGCACTTACAAGAAAGAGTTTTATGATACAAAGATGGGCGCTGATGTGGCTGAAGTGTTTGAGACCCGTATGGCAGATATCTTTTCAAACCATGACATGACTTATAAGATCGATGGACTCACGGGAAATACTATTGAGAGTCACAGGCTTATATATTTTGCTGGGCTGCAGGATCGTGATAAGCAACATGATCTTGTGGATGAGATCTGTCTTGGATATTTCACAGATGGGAGATTCATTGGGGACAGGGATTATCTTCTGAAATGTGCTGAAAAGATTGAAATAGAAGGGGCAGCAGAGTTTCTTGATGACCCCAACAATGGGCTCACTGAGGTCAAGGAAGAGCTTAAGAAGTACTCAGAAGTAAAAGGAATCCCATACTTTGTGATCAATGGAAAGGAAGAATTTGCTGGTGCCCAACCAACTGAGGTCTTCCTAGCTGCTTTTGAAGCAGCTACAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSBA

Protein Analysis

213

Amino Acids

24.31

Weight (kDa)

4.7

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38900 AT5G38900
fragaria_vesca	FvH4_6g46390 FvH4_6g46390 FvH4_6g46390 FvH4_6g46390
malus_domestica	MD09G1074300.v1.1 MD17G1065700.v1.1
prunus_persica	Prupe.3G249000_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1
pyrus_communis	pycom09g00140 pycom17g06590
rosa_chinensis	RchiOBHm_Chr2g0164921
rosa_laevigata	RLG00000021497
rosa_multiflora	Rmu_co8477167.1_g000001 Rmu_sc0001097.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086210 Rroxscaffold_5G00335800
rosa_rugosa	Rorug02G0511200 Rorug02G0511300
rosa_samantha	Rh2AG579500 Rh2BG590500 Rh2CG561200 Rh2DG600900
rosa_wichuraiana	Rw2G048100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	587
AclWI	GGATC	2 cut(s)	149, 354
AcsI	RAATTY	1 cut(s)	578
AcuI	CTGAAG	1 cut(s)	246
AdeI	CACNNNGTG	1 cut(s)	54
AfaI	GTAC	1 cut(s)	530
AfiI	CCNNNNNNNGG	3 cut(s)	173, 494, 495
AflII	CTTAAG	1 cut(s)	521
AgsI	TTSAA	4 cut(s)	149, 261, 455, 623
AluBI	AGCT	5 cut(s)	95, 130, 520, 614, 629
AluI	AGCT	5 cut(s)	95, 130, 520, 614, 629
Alw21I	GWGCWC	1 cut(s)	132
Alw26I	GTCTC	1 cut(s)	230
AlwI	GGATC	2 cut(s)	149, 354
AlwNI	CAGNNNCTG	1 cut(s)	50
ApeKI	GCWGC	4 cut(s)	340, 467, 614, 626
ApoI	RAATTY	1 cut(s)	578
AspLEI	GCGC	1 cut(s)	215
BaeGI	GKGCMC	1 cut(s)	592
BanI	GGYRCC	1 cut(s)	587
BanII	GRGCYC	2 cut(s)	132, 501
BbsI	GAAGAC	1 cut(s)	598
Bbv12I	GWGCWC	1 cut(s)	132
BbvI	GCAGC	3 cut(s)	327, 479, 601
BccI	CCATC	4 cut(s)	129, 202, 281, 395
BclI	TGATCA	1 cut(s)	561
BcoDI	GTCTC	1 cut(s)	230
BfaI	CTAG	1 cut(s)	611
BfmI	CTRYAG	1 cut(s)	341
BfoI	RGCGCY	1 cut(s)	216
BfrI	CTTAAG	1 cut(s)	521
BglII	AGATCT	1 cut(s)	378
BisI	GCNGC	4 cut(s)	341, 468, 615, 627
BlsI	GCNGC	4 cut(s)	342, 469, 616, 628
BmcAI	AGTACT	1 cut(s)	530
BmiI	GGNNCC	2 cut(s)	10, 589
BmsI	GCATC	1 cut(s)	148
BpiI	GAAGAC	1 cut(s)	598
BpmI	CTGGAG	1 cut(s)	119
Bsa29I	ATCGAT	2 cut(s)	115, 285
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	59
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 494, 495
BseCI	ATCGAT	2 cut(s)	115, 285
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	2 cut(s)	139, 379
BseLI	CCNNNNNNNGG	3 cut(s)	173, 494, 495
BseMII	CTCAG	4 cut(s)	145, 495, 546, 591
BseSI	GKGCMC	1 cut(s)	592
BseXI	GCAGC	3 cut(s)	327, 479, 601
BseYI	CCCAGC	1 cut(s)	335
BshNI	GGYRCC	1 cut(s)	587
BshVI	ATCGAT	2 cut(s)	115, 285
BsiHKAI	GWGCWC	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	3 cut(s)	173, 494, 495
BsmAI	GTCTC	1 cut(s)	230
BsmFI	GGGAC	1 cut(s)	431
Bso31I	GGTCTC	1 cut(s)	230
Bsp1286I	GDGCHC	3 cut(s)	132, 501, 592
Bsp143I	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
Bsp19I	CCATGG	1 cut(s)	59
BspCNI	CTCAG	4 cut(s)	144, 496, 545, 592
BspDI	ATCGAT	2 cut(s)	115, 285
BspLI	GGNNCC	2 cut(s)	10, 589
BspMAI	CTGCAG	1 cut(s)	345
BspPI	GGATC	2 cut(s)	149, 354
BspQI	GCTCTTC	1 cut(s)	510
BspT107I	GGYRCC	1 cut(s)	587
BspTI	CTTAAG	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	59
BssMI	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
BssT1I	CCWWGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	52
Bst6I	CTCTTC	1 cut(s)	510
BstAFI	CTTAAG	1 cut(s)	521
BstDEI	CTNAG	4 cut(s)	131, 504, 532, 600
BstDSI	CCRYGG	1 cut(s)	59
BstENI	CCTNNNNNAGG	1 cut(s)	171
BstF5I	GGATG	2 cut(s)	139, 379
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	7 cut(s)	115, 157, 285, 349, 367, 381, 564
BstMAI	GTCTC	1 cut(s)	230
BstMBI	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
BstMWI	GCNNNNNNNGC	4 cut(s)	72, 136, 221, 623
BstSFI	CTRYAG	1 cut(s)	341
BstSLI	GKGCMC	1 cut(s)	592
BstV1I	GCAGC	3 cut(s)	327, 479, 601
BstV2I	GAAGAC	1 cut(s)	598
BstX2I	RGATCY	1 cut(s)	378
BstYI	RGATCY	1 cut(s)	378
Bsu15I	ATCGAT	2 cut(s)	115, 285
BsuTUI	ATCGAT	2 cut(s)	115, 285
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	2 cut(s)	139, 379
BtsIMutI	CAGTG	2 cut(s)	48, 501
CaiI	CAGNNNCTG	1 cut(s)	50
CfoI	GCGC	1 cut(s)	215
ClaI	ATCGAT	2 cut(s)	115, 285
Csp6I	GTAC	1 cut(s)	529
CviAII	CATG	4 cut(s)	60, 266, 271, 362
CviQI	GTAC	1 cut(s)	529
DdeI	CTNAG	4 cut(s)	131, 504, 532, 600
DpnI	GATC	7 cut(s)	114, 156, 284, 348, 366, 380, 563
DpnII	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
DraIII	CACNNNGTG	1 cut(s)	54
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
Ecl136II	GAGCTC	1 cut(s)	130
Eco130I	CCWWGG	1 cut(s)	59
Eco24I	GRGCYC	2 cut(s)	132, 501
Eco31I	GGTCTC	1 cut(s)	230
Eco32I	GATATC	1 cut(s)	253
Eco53kI	GAGCTC	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	246
EcoICRI	GAGCTC	1 cut(s)	130
EcoNI	CCTNNNNNAGG	1 cut(s)	171
EcoRV	GATATC	1 cut(s)	253
EcoT14I	CCWWGG	1 cut(s)	59
EcoT38I	GRGCYC	2 cut(s)	132, 501
ErhI	CCWWGG	1 cut(s)	59
FaeI	CATG	4 cut(s)	63, 269, 274, 365
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	59, 265, 270, 361
FbaI	TGATCA	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	341, 468, 615, 627
FokI	GGATG	2 cut(s)	126, 386
FriOI	GRGCYC	2 cut(s)	132, 501
Fsp4HI	GCNGC	4 cut(s)	341, 468, 615, 627
FspBI	CTAG	1 cut(s)	611
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	4 cut(s)	341, 468, 615, 627
GsaI	CCCAGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	119
HaeII	RGCGCY	1 cut(s)	216
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	4 cut(s)	63, 269, 274, 365
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	291, 313, 408, 546
Hpy188I	TCNGA	3 cut(s)	134, 435, 535
Hpy188III	TCNNGA	4 cut(s)	98, 158, 350, 479
HpyAV	CCTTC	3 cut(s)	98, 167, 455
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	2 cut(s)	44, 343
HpyF10VI	GCNNNNNNNGC	4 cut(s)	72, 136, 221, 623
HpyF3I	CTNAG	4 cut(s)	131, 504, 532, 600
Hsp92II	CATG	4 cut(s)	63, 269, 274, 365
HspAI	GCGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
LguI	GCTCTTC	1 cut(s)	510
LpnPI	CCDG	7 cut(s)	83, 171, 304, 321, 329, 406, 570
Lsp1109I	GCAGC	3 cut(s)	327, 479, 601
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	1 cut(s)	611
MaeIII	GTNAC	1 cut(s)	314
MalI	GATC	7 cut(s)	114, 156, 284, 348, 366, 380, 563
MboI	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
MboII	GAAGA	4 cut(s)	422, 527, 587, 598
MflI	RGATCY	1 cut(s)	378
MhlI	GDGCHC	3 cut(s)	132, 501, 592
MluCI	AATT	4 cut(s)	30, 39, 150, 578
MlyI	GAGTC	2 cut(s)	285, 322
MnlI	CCTC	3 cut(s)	94, 499, 595
MseI	TTAA	1 cut(s)	522
MspCI	CTTAAG	1 cut(s)	521
MwoI	GCNNNNNNNGC	4 cut(s)	72, 136, 221, 623
NcoI	CCATGG	1 cut(s)	59
NdeII	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
NlaIII	CATG	4 cut(s)	63, 269, 274, 365
NlaIV	GGNNCC	2 cut(s)	10, 589
NmuCI	GTSAC	1 cut(s)	314
PciSI	GCTCTTC	1 cut(s)	510
PfeI	GAWTC	2 cut(s)	408, 546
PkrI	GCNGC	4 cut(s)	342, 469, 616, 628
PleI	GAGTC	2 cut(s)	285, 321
PpsI	GAGTC	2 cut(s)	285, 321
PsiI	TTATAA	1 cut(s)	279
Psp124BI	GAGCTC	1 cut(s)	132
PspFI	CCCAGC	1 cut(s)	335
PspN4I	GGNNCC	2 cut(s)	10, 589
PstI	CTGCAG	1 cut(s)	345
PstNI	CAGNNNCTG	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	378
RsaI	GTAC	1 cut(s)	530
RsaNI	GTAC	1 cut(s)	529
SacI	GAGCTC	1 cut(s)	132
SapI	GCTCTTC	1 cut(s)	510
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	4 cut(s)	341, 468, 615, 627
Sau3AI	GATC	7 cut(s)	112, 154, 282, 346, 364, 378, 561
ScaI	AGTACT	1 cut(s)	530
SchI	GAGTC	2 cut(s)	285, 322
SduI	GDGCHC	3 cut(s)	132, 501, 592
SetI	ASST	9 cut(s)	87, 97, 109, 132, 510, 522, 606, 616, 631
SfaNI	GCATC	1 cut(s)	148
SfcI	CTRYAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	521
SmoI	CTYRAG	1 cut(s)	521
Sse9I	AATT	4 cut(s)	30, 39, 150, 578
SspMI	CTAG	1 cut(s)	611
SstI	GAGCTC	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	59
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	2 cut(s)	115, 285
TasI	AATT	4 cut(s)	30, 39, 150, 578
TatI	WGTACW	1 cut(s)	528
TfiI	GAWTC	2 cut(s)	408, 546
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	55, 508
TseFI	GTSAC	1 cut(s)	314
TseI	GCWGC	4 cut(s)	340, 467, 614, 626
Tsp45I	GTSAC	1 cut(s)	314
TspDTI	ATGAA	1 cut(s)	400
TspRI	CASTG	2 cut(s)	55, 508
Vha464I	CTTAAG	1 cut(s)	521
XagI	CCTNNNNNAGG	1 cut(s)	171
XapI	RAATTY	1 cut(s)	578
XspI	CTAG	1 cut(s)	611
ZrmI	AGTACT	1 cut(s)	530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.