Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001097.1

Orthogroup ID

OG0005301

Physical Location & Seq

Genomic Coordinates Reverse (-)

4414 .. 7646

Gene Structure 3233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001097.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 942 bp

atgaaggagaggagaggagaggatctagagatggaagagcggagggaattttgggaggggggaggaaatgtagagttgggggctggggatactgggacaagggagccgggtcggatcgggttcggctttgaaggcctacgtgattgtggtgatgaagcagagaccataagaactcgaaaacgtggaacatattcgaaaacgttgaagtcactgtgtttggttcccttctatcgtagctccaagtctcaactttcatactctcacacacaaacagaaaaaatggctgagggatcagctggaaccaaacctgcgaagaagctcgtcgaaattgatataatttcggatactgtgtgcccatggtgctttgtgggcaagaggaatctcgacaaggctgtggaggcatccaacggtcgatatgactttaggattagatggcacccatatcagcttaatcctaatgcccctaaagaaggtcttgataagagtaagtactatgagcaaaaatttgggtctgatatgtctgcaaaaatgggcaataggatgtcagagattttcagaagccatggcctcgaatatgacctgtctggactcacgggaaatactctagacagtcacaggcttatctactttgccgggcagcaggatcttgcgaagcaacatgatcttgttggtgagctctttctcgggtacttcacacaggcaaagtacattggggacagggaatatcttctggaatgtgccaggaaggttggtgtagaaggagcagcagagtttcttgaggaccccaaccatggcctaaatgaggttaaagaagaccttaataagtactcgggcagcataaacggagtcccacatttcgtgattaataatggaaagcaagcattgagtggtgctcaaccgcctgagattttcttgaaagcttttgaagtagtaacaaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSBA

Protein Analysis

313

Amino Acids

35.21

Weight (kDa)

6.22

Isoelectric Point (pI)

37.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38900 AT5G38900
fragaria_vesca	FvH4_6g46390 FvH4_6g46390 FvH4_6g46390 FvH4_6g46390
malus_domestica	MD09G1074300.v1.1 MD17G1065700.v1.1
prunus_persica	Prupe.3G249000_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1
pyrus_communis	pycom09g00140 pycom17g06590
rosa_chinensis	RchiOBHm_Chr2g0164921
rosa_laevigata	RLG00000021497
rosa_multiflora	Rmu_co8477167.1_g000001 Rmu_sc0001097.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086210 Rroxscaffold_5G00335800
rosa_rugosa	Rorug02G0511200 Rorug02G0511300
rosa_samantha	Rh2AG579500 Rh2BG590500 Rh2CG561200 Rh2DG600900
rosa_wichuraiana	Rw2G048100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	316
AccB1I	GGYRCC	1 cut(s)	435
AccBSI	CCGCTC	1 cut(s)	40
AciI	CCGC	2 cut(s)	40, 899
AclI	AACGTT	1 cut(s)	200
AclWI	GGATC	4 cut(s)	30, 122, 298, 651
AcsI	RAATTY	2 cut(s)	47, 503
AfaI	GTAC	4 cut(s)	491, 689, 707, 827
AfiI	CCNNNNNNNGG	3 cut(s)	470, 791, 802
AgsI	TTSAA	4 cut(s)	131, 205, 916, 926
AjnI	CCWGG	1 cut(s)	740
AluBI	AGCT	6 cut(s)	237, 296, 319, 448, 676, 920
AluI	AGCT	6 cut(s)	237, 296, 319, 448, 676, 920
Alw21I	GWGCWC	2 cut(s)	678, 895
Alw26I	GTCTC	2 cut(s)	155, 249
AlwI	GGATC	4 cut(s)	30, 122, 298, 651
Ama87I	CYCGRG	2 cut(s)	683, 829
AoxI	GGCC	3 cut(s)	133, 565, 793
ApeKI	GCWGC	3 cut(s)	637, 764, 834
ApoI	RAATTY	2 cut(s)	47, 503
AseI	ATTAAT	1 cut(s)	864
Asp700I	GAANNNNTTC	2 cut(s)	190, 726
AspS9I	GGNCC	1 cut(s)	781
AsuC2I	CCSGG	2 cut(s)	108, 634
AsuHPI	GGTGA	2 cut(s)	161, 683
AsuII	TTCGAA	1 cut(s)	194
AvaI	CYCGRG	2 cut(s)	683, 829
AvaII	GGWCC	1 cut(s)	781
BaeGI	GKGCMC	1 cut(s)	356
BanI	GGYRCC	1 cut(s)	435
BanII	GRGCYC	1 cut(s)	678
BbsI	GAAGAC	1 cut(s)	819
Bbv12I	GWGCWC	2 cut(s)	678, 895
BbvCI	CCTCAGC	1 cut(s)	285
BbvI	GCAGC	3 cut(s)	649, 776, 846
BccI	CCATC	2 cut(s)	25, 426
BciT130I	CCWGG	1 cut(s)	742
BciVI	GTATCC	2 cut(s)	82, 337
BcnI	CCSGG	2 cut(s)	108, 634
BcoDI	GTCTC	2 cut(s)	155, 249
BfaI	CTAG	2 cut(s)	26, 605
BfuAI	ACCTGC	1 cut(s)	316
BfuI	GTATCC	2 cut(s)	82, 337
BisI	GCNGC	3 cut(s)	638, 765, 835
BlsI	GCNGC	3 cut(s)	639, 766, 836
BmcAI	AGTACT	2 cut(s)	491, 827
Bme1390I	CCNGG	3 cut(s)	108, 634, 742
Bme18I	GGWCC	1 cut(s)	781
BmeT110I	CYCGRG	2 cut(s)	683, 829
BmgT120I	GGNCC	1 cut(s)	781
BmiI	GGNNCC	5 cut(s)	105, 222, 301, 437, 783
BmrFI	CCNGG	3 cut(s)	108, 634, 742
BmrI	ACTGGG	1 cut(s)	102
BmsI	GCATC	1 cut(s)	410
BmuI	ACTGGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	819
BplI	GAGNNNNNCTC	2 cut(s)	877, 909
Bpu10I	CCTNAGC	1 cut(s)	285
Bpu14I	TTCGAA	1 cut(s)	194
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	2 cut(s)	108, 634
BsaAI	YACGTR	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	155
BsaJI	CCNNGG	3 cut(s)	356, 562, 790
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	3 cut(s)	470, 791, 802
Bse1I	ACTGG	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	742
BseDI	CCNNGG	3 cut(s)	356, 562, 790
BseGI	GGATG	2 cut(s)	401, 546
BseLI	CCNNNNNNNGG	3 cut(s)	470, 791, 802
BseMII	CTCAG	2 cut(s)	276, 894
BseNI	ACTGG	1 cut(s)	97
BseRI	GAGGAG	2 cut(s)	25, 30
BseSI	GKGCMC	1 cut(s)	356
BseXI	GCAGC	3 cut(s)	649, 776, 846
BseYI	CCCAGC	1 cut(s)	83
Bsh1285I	CGRYCG	1 cut(s)	412
BshFI	GGCC	3 cut(s)	135, 567, 795
BshNI	GGYRCC	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	412
BsiHKAI	GWGCWC	2 cut(s)	678, 895
BsiHKCI	CYCGRG	2 cut(s)	683, 829
BsiSI	CCGG	2 cut(s)	107, 633
BslFI	GGGAC	3 cut(s)	109, 728, 833
BslI	CCNNNNNNNGG	3 cut(s)	470, 791, 802
BsmAI	GTCTC	2 cut(s)	155, 249
BsmFI	GGGAC	3 cut(s)	109, 728, 833
BsnI	GGCC	3 cut(s)	135, 567, 795
Bso31I	GGTCTC	1 cut(s)	155
BsoBI	CYCGRG	2 cut(s)	683, 829
Bsp119I	TTCGAA	1 cut(s)	194
Bsp1286I	GDGCHC	3 cut(s)	356, 678, 895
Bsp143I	GATC	5 cut(s)	22, 114, 290, 643, 661
Bsp19I	CCATGG	3 cut(s)	356, 562, 790
BspACI	CCGC	2 cut(s)	40, 899
BspANI	GGCC	3 cut(s)	135, 567, 795
BspCNI	CTCAG	2 cut(s)	277, 895
BspLI	GGNNCC	5 cut(s)	105, 222, 301, 437, 783
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	4 cut(s)	30, 122, 298, 651
BspQI	GCTCTTC	1 cut(s)	30
BspT104I	TTCGAA	1 cut(s)	194
BspT107I	GGYRCC	1 cut(s)	435
BspTNI	GGTCTC	1 cut(s)	155
BsrBI	CCGCTC	1 cut(s)	40
BsrI	ACTGG	1 cut(s)	97
BssECI	CCNNGG	3 cut(s)	356, 562, 790
BssMI	GATC	5 cut(s)	22, 114, 290, 643, 661
BssT1I	CCWWGG	3 cut(s)	356, 562, 790
Bst2UI	CCWGG	1 cut(s)	742
Bst4CI	ACNGT	4 cut(s)	213, 349, 410, 611
Bst6I	CTCTTC	1 cut(s)	30
BstBAI	YACGTR	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	879
BstDEI	CTNAG	2 cut(s)	285, 903
BstDSI	CCRYGG	3 cut(s)	356, 562, 790
BstENI	CCTNNNNNAGG	2 cut(s)	468, 800
BstF5I	GGATG	2 cut(s)	401, 546
BstKTI	GATC	5 cut(s)	25, 117, 293, 646, 664
BstMAI	GTCTC	2 cut(s)	155, 249
BstMBI	GATC	5 cut(s)	22, 114, 290, 643, 661
BstMCI	CGRYCG	1 cut(s)	412
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 360, 369, 398
BstNI	CCWGG	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	106, 632, 740
BstSLI	GKGCMC	1 cut(s)	356
BstV1I	GCAGC	3 cut(s)	649, 776, 846
BstV2I	GAAGAC	1 cut(s)	819
BstX2I	RGATCY	2 cut(s)	22, 643
BstYI	RGATCY	2 cut(s)	22, 643
BsuI	GTATCC	2 cut(s)	82, 337
BsuRI	GGCC	3 cut(s)	135, 567, 795
BtgI	CCRYGG	3 cut(s)	356, 562, 790
BtsCI	GGATG	2 cut(s)	401, 546
BtsIMutI	CAGTG	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	1 cut(s)	879
Cfr13I	GGNCC	1 cut(s)	781
Csp6I	GTAC	4 cut(s)	490, 688, 706, 826
CviAII	CATG	4 cut(s)	357, 563, 659, 791
CviQI	GTAC	4 cut(s)	490, 688, 706, 826
DdeI	CTNAG	2 cut(s)	285, 903
DpnI	GATC	5 cut(s)	24, 116, 292, 645, 663
DpnII	GATC	5 cut(s)	22, 114, 290, 643, 661
Eam1104I	CTCTTC	1 cut(s)	30
EarI	CTCTTC	1 cut(s)	30
Ecl136II	GAGCTC	1 cut(s)	676
Eco130I	CCWWGG	3 cut(s)	356, 562, 790
Eco147I	AGGCCT	1 cut(s)	135
Eco24I	GRGCYC	1 cut(s)	678
Eco31I	GGTCTC	1 cut(s)	155
Eco47I	GGWCC	1 cut(s)	781
Eco53kI	GAGCTC	1 cut(s)	676
Eco88I	CYCGRG	2 cut(s)	683, 829
EcoICRI	GAGCTC	1 cut(s)	676
EcoNI	CCTNNNNNAGG	2 cut(s)	468, 800
EcoO109I	RGGNCCY	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	740
EcoT14I	CCWWGG	3 cut(s)	356, 562, 790
EcoT38I	GRGCYC	1 cut(s)	678
ErhI	CCWWGG	3 cut(s)	356, 562, 790
FaeI	CATG	4 cut(s)	360, 566, 662, 794
FalI	AAGNNNNNCTT	4 cut(s)	459, 491, 801, 833
FaqI	GGGAC	3 cut(s)	109, 728, 833
FatI	CATG	4 cut(s)	356, 562, 658, 790
Fnu4HI	GCNGC	3 cut(s)	638, 765, 835
FokI	GGATG	2 cut(s)	388, 553
FriOI	GRGCYC	1 cut(s)	678
Fsp4HI	GCNGC	3 cut(s)	638, 765, 835
FspBI	CTAG	2 cut(s)	26, 605
GluI	GCNGC	3 cut(s)	638, 765, 835
GsaI	CCCAGC	1 cut(s)	87
HaeIII	GGCC	3 cut(s)	135, 567, 795
HapII	CCGG	2 cut(s)	107, 633
Hin1II	CATG	4 cut(s)	360, 566, 662, 794
HindIII	AAGCTT	1 cut(s)	918
HinfI	GANTC	3 cut(s)	379, 588, 846
HpaII	CCGG	2 cut(s)	107, 633
HphI	GGTGA	2 cut(s)	161, 683
Hpy188I	TCNGA	5 cut(s)	114, 343, 514, 547, 557
Hpy188III	TCNNGA	9 cut(s)	26, 383, 476, 585, 605, 731, 776, 859, 913
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	5 cut(s)	125, 235, 464, 739, 752
HpyCH4III	ACNGT	4 cut(s)	213, 349, 410, 611
HpyCH4IV	ACGT	3 cut(s)	139, 181, 200
HpyCH4V	TGCA	1 cut(s)	524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 360, 369, 398
HpyF3I	CTNAG	2 cut(s)	285, 903
HpySE526I	ACGT	3 cut(s)	139, 181, 200
Hsp92II	CATG	4 cut(s)	360, 566, 662, 794
Kzo9I	GATC	5 cut(s)	22, 114, 290, 643, 661
LguI	GCTCTTC	1 cut(s)	30
LmnI	GCTCC	3 cut(s)	103, 242, 761
Lsp1109I	GCAGC	3 cut(s)	649, 776, 846
LweI	GCATC	1 cut(s)	410
MaeI	CTAG	2 cut(s)	26, 605
MaeII	ACGT	3 cut(s)	139, 181, 200
MaeIII	GTNAC	3 cut(s)	207, 611, 931
MalI	GATC	5 cut(s)	24, 116, 292, 645, 663
MbiI	CCGCTC	1 cut(s)	40
MboI	GATC	5 cut(s)	22, 114, 290, 643, 661
MboII	GAAGA	4 cut(s)	47, 325, 719, 824
MflI	RGATCY	2 cut(s)	22, 643
MhlI	GDGCHC	3 cut(s)	356, 678, 895
MluCI	AATT	4 cut(s)	47, 327, 336, 503
MlyI	GAGTC	2 cut(s)	582, 855
MmeI	TCCRAC	2 cut(s)	92, 429
MroXI	GAANNNNTTC	2 cut(s)	190, 726
MseI	TTAA	4 cut(s)	450, 807, 819, 864
MspA1I	CMGCKG	1 cut(s)	296
MspI	CCGG	2 cut(s)	107, 633
MspR9I	CCNGG	3 cut(s)	108, 634, 742
MvaI	CCWGG	1 cut(s)	742
MwoI	GCNNNNNNNGC	4 cut(s)	132, 360, 369, 398
NciI	CCSGG	2 cut(s)	108, 634
NcoI	CCATGG	3 cut(s)	356, 562, 790
NdeII	GATC	5 cut(s)	22, 114, 290, 643, 661
NlaIII	CATG	4 cut(s)	360, 566, 662, 794
NlaIV	GGNNCC	5 cut(s)	105, 222, 301, 437, 783
NmuCI	GTSAC	2 cut(s)	207, 611
NspV	TTCGAA	1 cut(s)	194
PceI	AGGCCT	1 cut(s)	135
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	2 cut(s)	190, 726
PfeI	GAWTC	1 cut(s)	379
PkrI	GCNGC	3 cut(s)	639, 766, 836
PleI	GAGTC	2 cut(s)	582, 854
PpsI	GAGTC	2 cut(s)	582, 854
Ppu21I	YACGTR	1 cut(s)	140
PpuMI	RGGWCCY	1 cut(s)	781
PshBI	ATTAAT	1 cut(s)	864
Psp124BI	GAGCTC	1 cut(s)	678
Psp1406I	AACGTT	1 cut(s)	200
Psp5II	RGGWCCY	1 cut(s)	781
Psp6I	CCWGG	1 cut(s)	740
PspFI	CCCAGC	1 cut(s)	83
PspGI	CCWGG	1 cut(s)	740
PspN4I	GGNNCC	5 cut(s)	105, 222, 301, 437, 783
PspPI	GGNCC	1 cut(s)	781
PspPPI	RGGWCCY	1 cut(s)	781
PsuI	RGATCY	2 cut(s)	22, 643
PvuII	CAGCTG	1 cut(s)	296
RsaI	GTAC	4 cut(s)	491, 689, 707, 827
RsaNI	GTAC	4 cut(s)	490, 688, 706, 826
SacI	GAGCTC	1 cut(s)	678
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	4 cut(s)	450, 807, 819, 864
SatI	GCNGC	3 cut(s)	638, 765, 835
Sau3AI	GATC	5 cut(s)	22, 114, 290, 643, 661
Sau96I	GGNCC	1 cut(s)	781
ScaI	AGTACT	2 cut(s)	491, 827
SchI	GAGTC	2 cut(s)	582, 855
ScrFI	CCNGG	3 cut(s)	108, 634, 742
SduI	GDGCHC	3 cut(s)	356, 678, 895
SfaNI	GCATC	1 cut(s)	410
SfuI	TTCGAA	1 cut(s)	194
SinI	GGWCC	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	776
SmoI	CTYRAG	1 cut(s)	776
Sse9I	AATT	4 cut(s)	47, 327, 336, 503
SseBI	AGGCCT	1 cut(s)	135
SsiI	CCGC	2 cut(s)	40, 899
SspMI	CTAG	2 cut(s)	26, 605
SstI	GAGCTC	1 cut(s)	678
StuI	AGGCCT	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	106, 632, 740
StyI	CCWWGG	3 cut(s)	356, 562, 790
TaaI	ACNGT	4 cut(s)	213, 349, 410, 611
TaiI	ACGT	3 cut(s)	142, 184, 203
TaqI	TCGA	6 cut(s)	175, 194, 324, 384, 412, 570
TasI	AATT	4 cut(s)	47, 327, 336, 503
TatI	WGTACW	3 cut(s)	489, 705, 825
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	4 cut(s)	450, 807, 819, 864
Tru9I	TTAA	4 cut(s)	450, 807, 819, 864
TscAI	CASTG	1 cut(s)	216
TseFI	GTSAC	2 cut(s)	207, 611
TseI	GCWGC	3 cut(s)	637, 764, 834
Tsp45I	GTSAC	2 cut(s)	207, 611
TspDTI	ATGAA	3 cut(s)	17, 168, 243
TspGWI	ACGGA	1 cut(s)	858
TspRI	CASTG	1 cut(s)	216
VpaK11BI	GGWCC	1 cut(s)	781
VspI	ATTAAT	1 cut(s)	864
XagI	CCTNNNNNAGG	2 cut(s)	468, 800
XapI	RAATTY	2 cut(s)	47, 503
XbaI	TCTAGA	2 cut(s)	25, 604
XmnI	GAANNNNTTC	2 cut(s)	190, 726
XspI	CTAG	2 cut(s)	26, 605
ZrmI	AGTACT	2 cut(s)	491, 827

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.