Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0005301

Physical Location & Seq

Genomic Coordinates Reverse (-)

23939538 .. 23942426

Gene Structure 2889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G249100.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGTGTGTTTGTGGGTTTATATTAAAACCATCAATCTTTAAAACACTGCATAAAACTATGGCTGGTGGGTCAGCTGCGAAAAAGCTTATCCAAATTGATATCGTTTCAGATACTGTATGCCCTTGGTGCTTTGTGGGCAAGAAAAATCTTGACAAAGCTTTAGAGGCATCTCGTGATCGATACGACTTTGAGGTTAGATGGCATCCATTTCAACTTAATCCTAATGCCCCTAAAGAAGGTGTTGATAAGAAAAGGTATTATGAGGAAAAATTTGGGTCTGGCATGTCTGGACGGATGGAGTCTCGGATGTCAGAGATTTTCAGAGGCCATGGCCTGGAATATAACCTGTCCGGACTCACGGGGAATACTCTAGATAGCCACAGGCTTATATATTTTGCTGGGCTTCAGGGTCATGAGAAGCAACATGAGCTTGTTGGTGAGCTATTTCTTGGATACTTCACACAGGAAAAATACATTGGGGACAGGGAATTTCTTTTGGAAAGTGCTAGAAAGATTGGAGTAGAAGGGGCGGCAGAGTTTCTTGAAGACCCCAACAATGGACTCAATGAGGTCAATGAAGAGCTCAAGAAGTACACGAAAGACATAAATGGAGTCCCACATTTTCTGATTAATAATGGAAAGCAGGAACTAAGTGGCGGTCAACCGCCTGAGGTGTTCTTGAGAGCTTTTGAAGCAGCCACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSBA

Protein Analysis

236

Amino Acids

26.56

Weight (kDa)

6.4

Isoelectric Point (pI)

30.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38900 AT5G38900
fragaria_vesca	FvH4_6g46390 FvH4_6g46390 FvH4_6g46390 FvH4_6g46390
malus_domestica	MD09G1074300.v1.1 MD17G1065700.v1.1
prunus_persica	Prupe.3G249000_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1
pyrus_communis	pycom09g00140 pycom17g06590
rosa_chinensis	RchiOBHm_Chr2g0164921
rosa_laevigata	RLG00000021497
rosa_multiflora	Rmu_co8477167.1_g000001 Rmu_sc0001097.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086210 Rroxscaffold_5G00335800
rosa_rugosa	Rorug02G0511200 Rorug02G0511300
rosa_samantha	Rh2AG579500 Rh2BG590500 Rh2CG561200 Rh2DG600900
rosa_wichuraiana	Rw2G048100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	334
AccIII	TCCGGA	1 cut(s)	350
AciI	CCGC	3 cut(s)	530, 657, 665
AcsI	RAATTY	2 cut(s)	269, 488
AcuI	CTGAAG	1 cut(s)	389
AdeI	CACNNNGTG	1 cut(s)	705
AfaI	GTAC	1 cut(s)	593
AfiI	CCNNNNNNNGG	3 cut(s)	236, 334, 557
AgsI	TTSAA	3 cut(s)	212, 545, 692
AjnI	CCWGG	1 cut(s)	333
AjuI	GAANNNNNNNTTGG	2 cut(s)	459, 491
AluBI	AGCT	7 cut(s)	74, 85, 158, 430, 442, 583, 686
AluI	AGCT	7 cut(s)	74, 85, 158, 430, 442, 583, 686
Alw21I	GWGCWC	1 cut(s)	585
Alw26I	GTCTC	1 cut(s)	306
AlwNI	CAGNNNCTG	1 cut(s)	113
Aor13HI	TCCGGA	1 cut(s)	350
AoxI	GGCC	2 cut(s)	325, 331
ApeKI	GCWGC	2 cut(s)	74, 695
ApoI	RAATTY	2 cut(s)	269, 488
AseI	ATTAAT	1 cut(s)	630
AsuHPI	GGTGA	1 cut(s)	449
AxyI	CCTNAGG	1 cut(s)	669
BanII	GRGCYC	1 cut(s)	585
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	1 cut(s)	61
BccI	CCATC	3 cut(s)	37, 192, 289
BciT130I	CCWGG	1 cut(s)	335
BciVI	GTATCC	1 cut(s)	446
BcoDI	GTCTC	1 cut(s)	306
BfaI	CTAG	2 cut(s)	371, 507
BfuI	GTATCC	1 cut(s)	446
BisI	GCNGC	3 cut(s)	75, 531, 696
BlsI	GCNGC	3 cut(s)	76, 532, 697
Bme1390I	CCNGG	1 cut(s)	335
BmrFI	CCNGG	1 cut(s)	335
BmsI	GCATC	2 cut(s)	176, 211
BpiI	GAAGAC	1 cut(s)	552
BpuEI	CTTGAG	2 cut(s)	569, 700
Bsa29I	ATCGAT	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	122, 328
BsaWI	WCCGGW	1 cut(s)	350
Bsc4I	CCNNNNNNNGG	3 cut(s)	236, 334, 557
Bse21I	CCTNAGG	1 cut(s)	669
BseAI	TCCGGA	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	335
BseCI	ATCGAT	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	122, 328
BseGI	GGATG	3 cut(s)	202, 300, 312
BseLI	CCNNNNNNNGG	3 cut(s)	236, 334, 557
BseMII	CTCAG	1 cut(s)	660
BseXI	GCAGC	1 cut(s)	61
BseYI	CCCAGC	1 cut(s)	398
BshFI	GGCC	2 cut(s)	327, 333
BshVI	ATCGAT	1 cut(s)	178
BsiHKAI	GWGCWC	1 cut(s)	585
BsiSI	CCGG	1 cut(s)	351
BslFI	GGGAC	2 cut(s)	494, 599
BslI	CCNNNNNNNGG	3 cut(s)	236, 334, 557
BsmAI	GTCTC	1 cut(s)	306
BsmFI	GGGAC	2 cut(s)	494, 599
BsnI	GGCC	2 cut(s)	327, 333
Bsp1286I	GDGCHC	1 cut(s)	585
Bsp13I	TCCGGA	1 cut(s)	350
Bsp143I	GATC	1 cut(s)	175
Bsp19I	CCATGG	1 cut(s)	328
BspACI	CCGC	3 cut(s)	530, 657, 665
BspANI	GGCC	2 cut(s)	327, 333
BspCNI	CTCAG	1 cut(s)	661
BspDI	ATCGAT	1 cut(s)	178
BspEI	TCCGGA	1 cut(s)	350
BspHI	TCATGA	1 cut(s)	412
BspQI	GCTCTTC	1 cut(s)	573
BssECI	CCNNGG	2 cut(s)	122, 328
BssMI	GATC	1 cut(s)	175
BssSI	CACGAG	1 cut(s)	171
BssT1I	CCWWGG	2 cut(s)	122, 328
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	335
Bst4CI	ACNGT	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	573
BstDEI	CTNAG	2 cut(s)	650, 669
BstDSI	CCRYGG	1 cut(s)	328
BstENI	CCTNNNNNAGG	1 cut(s)	234
BstF5I	GGATG	3 cut(s)	202, 300, 312
BstKTI	GATC	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	306
BstMBI	GATC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	5 cut(s)	126, 135, 164, 427, 692
BstNI	CCWGG	1 cut(s)	335
BstNSI	RCATGY	1 cut(s)	286
BstSCI	CCNGG	1 cut(s)	333
BstV1I	GCAGC	1 cut(s)	61
BstV2I	GAAGAC	1 cut(s)	552
Bsu15I	ATCGAT	1 cut(s)	178
Bsu36I	CCTNAGG	1 cut(s)	669
BsuI	GTATCC	1 cut(s)	446
BsuRI	GGCC	2 cut(s)	327, 333
BsuTUI	ATCGAT	1 cut(s)	178
BtgI	CCRYGG	1 cut(s)	328
BtsCI	GGATG	3 cut(s)	202, 300, 312
BtsI	GCAGTG	1 cut(s)	44
BtsIMutI	CAGTG	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	113
CciI	TCATGA	1 cut(s)	412
ClaI	ATCGAT	1 cut(s)	178
Csp6I	GTAC	1 cut(s)	592
CviAII	CATG	4 cut(s)	283, 329, 413, 425
CviQI	GTAC	1 cut(s)	592
DdeI	CTNAG	2 cut(s)	650, 669
DpnI	GATC	1 cut(s)	177
DpnII	GATC	1 cut(s)	175
DraI	TTTAAA	1 cut(s)	40
DraIII	CACNNNGTG	1 cut(s)	705
Eam1104I	CTCTTC	1 cut(s)	573
EarI	CTCTTC	1 cut(s)	573
Ecl136II	GAGCTC	1 cut(s)	583
Eco130I	CCWWGG	2 cut(s)	122, 328
Eco24I	GRGCYC	1 cut(s)	585
Eco32I	GATATC	1 cut(s)	100
Eco53kI	GAGCTC	1 cut(s)	583
Eco57I	CTGAAG	1 cut(s)	389
Eco81I	CCTNAGG	1 cut(s)	669
EcoICRI	GAGCTC	1 cut(s)	583
EcoNI	CCTNNNNNAGG	1 cut(s)	234
EcoRII	CCWGG	1 cut(s)	333
EcoRV	GATATC	1 cut(s)	100
EcoT14I	CCWWGG	2 cut(s)	122, 328
EcoT38I	GRGCYC	1 cut(s)	585
ErhI	CCWWGG	2 cut(s)	122, 328
FaeI	CATG	4 cut(s)	286, 332, 416, 428
FaqI	GGGAC	2 cut(s)	494, 599
FatI	CATG	4 cut(s)	282, 328, 412, 424
Fnu4HI	GCNGC	3 cut(s)	75, 531, 696
FokI	GGATG	3 cut(s)	189, 307, 319
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	3 cut(s)	75, 531, 696
FspBI	CTAG	2 cut(s)	371, 507
GluI	GCNGC	3 cut(s)	75, 531, 696
GsaI	CCCAGC	1 cut(s)	402
HaeIII	GGCC	2 cut(s)	327, 333
HapII	CCGG	1 cut(s)	351
Hin1II	CATG	4 cut(s)	286, 332, 416, 428
HincII	GTYRAC	1 cut(s)	662
HindII	GTYRAC	1 cut(s)	662
HindIII	AAGCTT	2 cut(s)	83, 156
HinfI	GANTC	4 cut(s)	299, 354, 561, 612
HpaII	CCGG	1 cut(s)	351
HphI	GGTGA	1 cut(s)	449
Hpy166II	GTNNAC	2 cut(s)	594, 662
Hpy188I	TCNGA	5 cut(s)	109, 306, 313, 323, 627
Hpy188III	TCNNGA	9 cut(s)	149, 173, 288, 351, 371, 413, 542, 586, 679
Hpy8I	GTNNAC	2 cut(s)	594, 662
HpyAV	CCTTC	2 cut(s)	230, 518
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	1 cut(s)	49
HpyF10VI	GCNNNNNNNGC	5 cut(s)	126, 135, 164, 427, 692
HpyF3I	CTNAG	2 cut(s)	650, 669
Hsp92II	CATG	4 cut(s)	286, 332, 416, 428
Kpn2I	TCCGGA	1 cut(s)	350
Kzo9I	GATC	1 cut(s)	175
LguI	GCTCTTC	1 cut(s)	573
Lsp1109I	GCAGC	1 cut(s)	61
LweI	GCATC	2 cut(s)	176, 211
MaeI	CTAG	2 cut(s)	371, 507
MalI	GATC	1 cut(s)	177
MboI	GATC	1 cut(s)	175
MboII	GAAGA	2 cut(s)	557, 590
MhlI	GDGCHC	1 cut(s)	585
MluCI	AATT	3 cut(s)	93, 269, 488
MlyI	GAGTC	4 cut(s)	308, 348, 555, 621
MnlI	CCTC	6 cut(s)	157, 184, 256, 317, 562, 664
MroI	TCCGGA	1 cut(s)	350
MseI	TTAA	4 cut(s)	23, 39, 216, 630
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	1 cut(s)	351
MspR9I	CCNGG	1 cut(s)	335
MvaI	CCWGG	1 cut(s)	335
MwoI	GCNNNNNNNGC	5 cut(s)	126, 135, 164, 427, 692
NcoI	CCATGG	1 cut(s)	328
NdeII	GATC	1 cut(s)	175
NlaIII	CATG	4 cut(s)	286, 332, 416, 428
NspI	RCATGY	1 cut(s)	286
PagI	TCATGA	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	573
PflMI	CCANNNNNTGG	1 cut(s)	334
PkrI	GCNGC	3 cut(s)	76, 532, 697
PleI	GAGTC	4 cut(s)	307, 348, 555, 620
PpsI	GAGTC	4 cut(s)	307, 348, 555, 620
PshBI	ATTAAT	1 cut(s)	630
Psp124BI	GAGCTC	1 cut(s)	585
Psp6I	CCWGG	1 cut(s)	333
PspFI	CCCAGC	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	333
PstNI	CAGNNNCTG	1 cut(s)	113
PvuII	CAGCTG	1 cut(s)	74
RsaI	GTAC	1 cut(s)	593
RsaNI	GTAC	1 cut(s)	592
SacI	GAGCTC	1 cut(s)	585
SapI	GCTCTTC	1 cut(s)	573
SaqAI	TTAA	4 cut(s)	23, 39, 216, 630
SatI	GCNGC	3 cut(s)	75, 531, 696
Sau3AI	GATC	1 cut(s)	175
SchI	GAGTC	4 cut(s)	308, 348, 555, 621
ScrFI	CCNGG	1 cut(s)	335
SduI	GDGCHC	1 cut(s)	585
SfaNI	GCATC	2 cut(s)	176, 211
SmlI	CTYRAG	2 cut(s)	584, 679
SmoI	CTYRAG	2 cut(s)	584, 679
Sse9I	AATT	3 cut(s)	93, 269, 488
SsiI	CCGC	3 cut(s)	530, 657, 665
SspMI	CTAG	2 cut(s)	371, 507
SstI	GAGCTC	1 cut(s)	585
StyD4I	CCNGG	1 cut(s)	333
StyI	CCWWGG	2 cut(s)	122, 328
TaaI	ACNGT	1 cut(s)	115
TaqI	TCGA	1 cut(s)	178
TasI	AATT	3 cut(s)	93, 269, 488
TatI	WGTACW	1 cut(s)	591
TauI	GCSGC	1 cut(s)	533
Tru1I	TTAA	4 cut(s)	23, 39, 216, 630
Tru9I	TTAA	4 cut(s)	23, 39, 216, 630
TscAI	CASTG	1 cut(s)	51
TseI	GCWGC	2 cut(s)	74, 695
TspDTI	ATGAA	1 cut(s)	591
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	51
Van91I	CCANNNNNTGG	1 cut(s)	334
VspI	ATTAAT	1 cut(s)	630
XagI	CCTNNNNNAGG	1 cut(s)	234
XapI	RAATTY	2 cut(s)	269, 488
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	286
XspI	CTAG	2 cut(s)	371, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.