Rmu_co8477167.1_g000001

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8477167.1
OG0005301
Physical Location & Seq
Forward (+)
421 .. 959
539 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8477167.1_g000001.1.cds

Sequence Viewer

Length: 255 bp
atgaggcacaaaaatttgcaatttggatatagggaatatcttctggaatgtgccaggaaggttggtgtagaaggagcagcagagtttcttgaggaccccaaccatggcctaaatgaggttaaagaagaccttaataagtactcgggcagcataaacggagtcccacatttcgtgattaataatggaaagcaagcattgagtggtgctcaaccgcctgagattttcttgaaagcttttgaagtagtaacaaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

84

Amino Acids

9.4

Weight (kDa)

6.27

Isoelectric Point (pI)

27.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 212
AcsI RAATTY 1 cut(s) 13
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 104, 115
AgsI TTSAA 2 cut(s) 229, 239
AjnI CCWGG 1 cut(s) 53
AluBI AGCT 1 cut(s) 233
AluI AGCT 1 cut(s) 233
Alw21I GWGCWC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 142
AoxI GGCC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 77, 147
ApoI RAATTY 1 cut(s) 13
AseI ATTAAT 1 cut(s) 177
Asp700I GAANNNNTTC 1 cut(s) 39
AspS9I GGNCC 1 cut(s) 94
AvaI CYCGRG 1 cut(s) 142
AvaII GGWCC 1 cut(s) 94
BbsI GAAGAC 1 cut(s) 132
Bbv12I GWGCWC 1 cut(s) 208
BbvI GCAGC 2 cut(s) 89, 159
BciT130I CCWGG 1 cut(s) 55
BisI GCNGC 2 cut(s) 78, 148
BlsI GCNGC 2 cut(s) 79, 149
BmcAI AGTACT 1 cut(s) 140
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 1 cut(s) 94
BmeT110I CYCGRG 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 94
BmiI GGNNCC 1 cut(s) 96
BmrFI CCNGG 1 cut(s) 55
BpiI GAAGAC 1 cut(s) 132
BplI GAGNNNNNCTC 2 cut(s) 190, 222
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 103
Bsc4I CCNNNNNNNGG 2 cut(s) 104, 115
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 103
BseLI CCNNNNNNNGG 2 cut(s) 104, 115
BseMII CTCAG 1 cut(s) 207
BseXI GCAGC 2 cut(s) 89, 159
BshFI GGCC 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 142
BslFI GGGAC 1 cut(s) 146
BslI CCNNNNNNNGG 2 cut(s) 104, 115
BsmFI GGGAC 1 cut(s) 146
BsnI GGCC 1 cut(s) 108
BsoBI CYCGRG 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 208
Bsp19I CCATGG 1 cut(s) 103
BspACI CCGC 1 cut(s) 212
BspANI GGCC 1 cut(s) 108
BspCNI CTCAG 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 96
BssECI CCNNGG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 1 cut(s) 55
BstC8I GCNNGC 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 216
BstDSI CCRYGG 1 cut(s) 103
BstENI CCTNNNNNAGG 1 cut(s) 113
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstV1I GCAGC 2 cut(s) 89, 159
BstV2I GAAGAC 1 cut(s) 132
BsuRI GGCC 1 cut(s) 108
BtgI CCRYGG 1 cut(s) 103
Cac8I GCNNGC 1 cut(s) 192
Cfr13I GGNCC 1 cut(s) 94
Csp6I GTAC 1 cut(s) 139
CviAII CATG 1 cut(s) 104
CviJI RGCY 2 cut(s) 108, 233
CviKI_1 RGCY 2 cut(s) 108, 233
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 216
Eco130I CCWWGG 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 94
Eco88I CYCGRG 1 cut(s) 142
EcoNI CCTNNNNNAGG 1 cut(s) 113
EcoO109I RGGNCCY 1 cut(s) 94
EcoRII CCWGG 1 cut(s) 53
EcoT14I CCWWGG 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 1 cut(s) 107
FaiI YATR 3 cut(s) 30, 105, 152
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FaqI GGGAC 1 cut(s) 146
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 78, 148
Fsp4HI GCNGC 2 cut(s) 78, 148
GluI GCNGC 2 cut(s) 78, 148
HaeIII GGCC 1 cut(s) 108
Hin1II CATG 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 231
HinfI GANTC 1 cut(s) 159
Hpy188III TCNNGA 4 cut(s) 44, 89, 172, 226
HpyAV CCTTC 2 cut(s) 52, 65
HpyCH4V TGCA 1 cut(s) 19
HpyF3I CTNAG 1 cut(s) 216
Hsp92II CATG 1 cut(s) 107
LmnI GCTCC 1 cut(s) 74
LpnPI CCDG 4 cut(s) 29, 40, 67, 228
Lsp1109I GCAGC 2 cut(s) 89, 159
MaeIII GTNAC 1 cut(s) 244
MboII GAAGA 2 cut(s) 32, 137
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 2 cut(s) 13, 20
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 2 cut(s) 85, 109
MroXI GAANNNNTTC 1 cut(s) 39
MseI TTAA 3 cut(s) 120, 132, 177
MspR9I CCNGG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 103
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 39
PkrI GCNGC 2 cut(s) 79, 149
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PpuMI RGGWCCY 1 cut(s) 94
PshBI ATTAAT 1 cut(s) 177
Psp5II RGGWCCY 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 96
PspPI GGNCC 1 cut(s) 94
PspPPI RGGWCCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
SaqAI TTAA 3 cut(s) 120, 132, 177
SatI GCNGC 2 cut(s) 78, 148
Sau96I GGNCC 1 cut(s) 94
ScaI AGTACT 1 cut(s) 140
SchI GAGTC 1 cut(s) 168
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 208
SetI ASST 4 cut(s) 63, 120, 132, 235
SinI GGWCC 1 cut(s) 94
SmlI CTYRAG 1 cut(s) 89
SmoI CTYRAG 1 cut(s) 89
Sse9I AATT 2 cut(s) 13, 20
SsiI CCGC 1 cut(s) 212
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 103
TasI AATT 2 cut(s) 13, 20
TatI WGTACW 1 cut(s) 138
Tru1I TTAA 3 cut(s) 120, 132, 177
Tru9I TTAA 3 cut(s) 120, 132, 177
TseI GCWGC 2 cut(s) 77, 147
TspGWI ACGGA 1 cut(s) 171
VpaK11BI GGWCC 1 cut(s) 94
VspI ATTAAT 1 cut(s) 177
XagI CCTNNNNNAGG 1 cut(s) 113
XapI RAATTY 1 cut(s) 13
XmnI GAANNNNTTC 1 cut(s) 39
ZrmI AGTACT 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.