RLG00000021497

DSBA-like thioredoxin domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0005301
Physical Location & Seq
Reverse (-)
75912595 .. 75914924
2330 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021497

Sequence Viewer

Length: 840 bp
ATGGTGTTATGCACCTTTCGTTTTGACTTTTTGTGGTACGTGTTAGGTGATGAAGCAGAGGCCATAAGAACTCGAAAACGTGGAACATATTGGAAAACGTTGAAGCCACTGTGTTTGGTTCCCTTCTATCGGAGCTCCAAGTCTTGGCTTTCATACTCTCACACACAAACAGAAAAAATGGCTGAGGGATCATCTGGAACCAAACCTGCGAAGAAGCTCGTCGAAATTGATATAATTTCGGATACTGTGTGCCCATGGTGCTTTGTGGGCAAGAGGAATCTCGACAAGGCTGTGGAGACATCTAACGGTCGATATGACTTTAGGATTAGATGGCACCCATATCAGCTTAATCCTAATGCCCCTAAAGAAGGTCTTGATAAGACAAAGTACTATGAGCAAAAATTTGGGTCTGATATGTCTGCAAAAATGGGCAATAGGATGTCAGAGATTTTCAGAAGCCATGGCCTCGAATATGACCTGTCTGGACTCACGGGAAATACTCTAGATAGTCACAGGCTTATCTACTTTGCTGGGCAGCAGGATCTTGCGAAGCAACATGATCTTGTTGGTGAGCTCTTTCTTGGGTACTTCACACAGGCAAAGTACATTGGGGACAGGGAATATCTTCTGGAATGTGCTAGGAAGGTTGGTGTAGAAGGAGCAGCAGAGTTTCTTGAAGACCCCAACAATGGCCTAAATGAGGTTAAAGAAGACCTTAATAAGTACTCGGGCAGCATAAACGGAGTCCCACATTTCTTGATTAATAATGGAAAGCAAGCATTGAGTGGTGCTCAACCGCCTGAGATTTTCTTGAAAGCTTTTGAAGTAGTAACAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DSBA

Protein Analysis

280

Amino Acids

31.82

Weight (kDa)

8.14

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DSBA PF01323 76 - 274 1.7e-32 DSBA-like thioredoxin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 214
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 144
AciI CCGC 1 cut(s) 797
AclI AACGTT 1 cut(s) 98
AclWI GGATC 2 cut(s) 196, 549
AcsI RAATTY 1 cut(s) 401
AfaI GTAC 5 cut(s) 38, 389, 587, 605, 725
AfiI CCNNNNNNNGG 5 cut(s) 129, 144, 368, 689, 700
AflIII ACRYGT 1 cut(s) 39
AgsI TTSAA 4 cut(s) 103, 677, 814, 824
AluBI AGCT 5 cut(s) 135, 217, 346, 574, 818
AluI AGCT 5 cut(s) 135, 217, 346, 574, 818
Alw21I GWGCWC 3 cut(s) 137, 576, 793
Alw26I GTCTC 1 cut(s) 290
AlwI GGATC 2 cut(s) 196, 549
Ama87I CYCGRG 1 cut(s) 727
AoxI GGCC 3 cut(s) 60, 463, 691
ApeKI GCWGC 3 cut(s) 535, 662, 732
ApoI RAATTY 1 cut(s) 401
AseI ATTAAT 1 cut(s) 762
Asp700I GAANNNNTTC 1 cut(s) 624
AsuHPI GGTGA 2 cut(s) 59, 581
AvaI CYCGRG 1 cut(s) 727
BaeGI GKGCMC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 333
BanII GRGCYC 2 cut(s) 137, 576
BbsI GAAGAC 2 cut(s) 684, 717
Bbv12I GWGCWC 3 cut(s) 137, 576, 793
BbvCI CCTCAGC 1 cut(s) 183
BbvI GCAGC 3 cut(s) 547, 674, 744
BccI CCATC 1 cut(s) 324
BciVI GTATCC 1 cut(s) 235
BcoDI GTCTC 1 cut(s) 290
BfaI CTAG 2 cut(s) 503, 639
BfuAI ACCTGC 1 cut(s) 214
BfuI GTATCC 1 cut(s) 235
BisI GCNGC 3 cut(s) 536, 663, 733
BlsI GCNGC 3 cut(s) 537, 664, 734
BmcAI AGTACT 2 cut(s) 389, 725
BmeT110I CYCGRG 1 cut(s) 727
BmiI GGNNCC 3 cut(s) 120, 199, 335
BpiI GAAGAC 2 cut(s) 684, 717
BplI GAGNNNNNCTC 2 cut(s) 775, 807
Bpu10I CCTNAGC 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 40
BsaJI CCNNGG 2 cut(s) 254, 460
Bsc4I CCNNNNNNNGG 5 cut(s) 129, 144, 368, 689, 700
BseDI CCNNGG 2 cut(s) 254, 460
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 5 cut(s) 129, 144, 368, 689, 700
BseMII CTCAG 2 cut(s) 174, 792
BseSI GKGCMC 1 cut(s) 254
BseXI GCAGC 3 cut(s) 547, 674, 744
BseYI CCCAGC 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 310
BshFI GGCC 3 cut(s) 62, 465, 693
BshNI GGYRCC 1 cut(s) 333
BsiEI CGRYCG 1 cut(s) 310
BsiHKAI GWGCWC 3 cut(s) 137, 576, 793
BsiHKCI CYCGRG 1 cut(s) 727
BslFI GGGAC 2 cut(s) 626, 731
BslI CCNNNNNNNGG 5 cut(s) 129, 144, 368, 689, 700
BsmAI GTCTC 1 cut(s) 290
BsmFI GGGAC 2 cut(s) 626, 731
BsnI GGCC 3 cut(s) 62, 465, 693
BsoBI CYCGRG 1 cut(s) 727
Bsp1286I GDGCHC 4 cut(s) 137, 254, 576, 793
Bsp143I GATC 3 cut(s) 188, 541, 559
Bsp19I CCATGG 2 cut(s) 254, 460
BspACI CCGC 1 cut(s) 797
BspANI GGCC 3 cut(s) 62, 465, 693
BspCNI CTCAG 2 cut(s) 175, 793
BspLI GGNNCC 3 cut(s) 120, 199, 335
BspMI ACCTGC 1 cut(s) 214
BspPI GGATC 2 cut(s) 196, 549
BspT107I GGYRCC 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 254, 460
BssMI GATC 3 cut(s) 188, 541, 559
BssT1I CCWWGG 2 cut(s) 254, 460
Bst4CI ACNGT 3 cut(s) 111, 247, 308
BstBAI YACGTR 1 cut(s) 40
BstC8I GCNNGC 1 cut(s) 777
BstDEI CTNAG 2 cut(s) 183, 801
BstDSI CCRYGG 2 cut(s) 254, 460
BstENI CCTNNNNNAGG 2 cut(s) 366, 698
BstF5I GGATG 1 cut(s) 444
BstKTI GATC 3 cut(s) 191, 544, 562
BstMAI GTCTC 1 cut(s) 290
BstMBI GATC 3 cut(s) 188, 541, 559
BstMCI CGRYCG 1 cut(s) 310
BstMWI GCNNNNNNNGC 2 cut(s) 258, 267
BstSLI GKGCMC 1 cut(s) 254
BstV1I GCAGC 3 cut(s) 547, 674, 744
BstV2I GAAGAC 2 cut(s) 684, 717
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BsuI GTATCC 1 cut(s) 235
BsuRI GGCC 3 cut(s) 62, 465, 693
BtgI CCRYGG 2 cut(s) 254, 460
BtsCI GGATG 1 cut(s) 444
BtsIMutI CAGTG 1 cut(s) 107
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 777
Csp6I GTAC 5 cut(s) 37, 388, 586, 604, 724
CspCI CAANNNNNGTGG 4 cut(s) 96, 131, 738, 773
CviAII CATG 3 cut(s) 255, 461, 557
CviQI GTAC 5 cut(s) 37, 388, 586, 604, 724
DdeI CTNAG 2 cut(s) 183, 801
DpnI GATC 3 cut(s) 190, 543, 561
DpnII GATC 3 cut(s) 188, 541, 559
Ecl136II GAGCTC 2 cut(s) 135, 574
Eco130I CCWWGG 2 cut(s) 254, 460
Eco24I GRGCYC 2 cut(s) 137, 576
Eco53kI GAGCTC 2 cut(s) 135, 574
Eco88I CYCGRG 1 cut(s) 727
EcoICRI GAGCTC 2 cut(s) 135, 574
EcoNI CCTNNNNNAGG 2 cut(s) 366, 698
EcoT14I CCWWGG 2 cut(s) 254, 460
EcoT38I GRGCYC 2 cut(s) 137, 576
ErhI CCWWGG 2 cut(s) 254, 460
FaeI CATG 3 cut(s) 258, 464, 560
FalI AAGNNNNNCTT 4 cut(s) 357, 389, 699, 731
FaqI GGGAC 2 cut(s) 626, 731
FatI CATG 3 cut(s) 254, 460, 556
Fnu4HI GCNGC 3 cut(s) 536, 663, 733
FokI GGATG 1 cut(s) 451
FriOI GRGCYC 2 cut(s) 137, 576
Fsp4HI GCNGC 3 cut(s) 536, 663, 733
FspBI CTAG 2 cut(s) 503, 639
GluI GCNGC 3 cut(s) 536, 663, 733
GsaI CCCAGC 1 cut(s) 534
HaeIII GGCC 3 cut(s) 62, 465, 693
Hin1II CATG 3 cut(s) 258, 464, 560
HindIII AAGCTT 1 cut(s) 816
HinfI GANTC 3 cut(s) 277, 486, 744
HphI GGTGA 2 cut(s) 59, 581
Hpy188I TCNGA 5 cut(s) 132, 241, 412, 445, 455
Hpy188III TCNNGA 9 cut(s) 195, 281, 374, 483, 503, 629, 674, 757, 811
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 4 cut(s) 133, 362, 637, 650
HpyCH4III ACNGT 3 cut(s) 111, 247, 308
HpyCH4IV ACGT 3 cut(s) 39, 79, 98
HpyCH4V TGCA 2 cut(s) 12, 422
HpyF10VI GCNNNNNNNGC 2 cut(s) 258, 267
HpyF3I CTNAG 2 cut(s) 183, 801
HpySE526I ACGT 3 cut(s) 39, 79, 98
Hsp92II CATG 3 cut(s) 258, 464, 560
Kzo9I GATC 3 cut(s) 188, 541, 559
LmnI GCTCC 3 cut(s) 132, 140, 659
Lsp1109I GCAGC 3 cut(s) 547, 674, 744
MaeI CTAG 2 cut(s) 503, 639
MaeII ACGT 3 cut(s) 39, 79, 98
MaeIII GTNAC 2 cut(s) 509, 829
MalI GATC 3 cut(s) 190, 543, 561
MboI GATC 3 cut(s) 188, 541, 559
MboII GAAGA 4 cut(s) 223, 617, 689, 722
MflI RGATCY 1 cut(s) 541
MhlI GDGCHC 4 cut(s) 137, 254, 576, 793
MluCI AATT 3 cut(s) 225, 234, 401
MlyI GAGTC 2 cut(s) 480, 753
MnlI CCTC 5 cut(s) 52, 178, 267, 476, 694
MroXI GAANNNNTTC 1 cut(s) 624
MseI TTAA 4 cut(s) 348, 705, 717, 762
MwoI GCNNNNNNNGC 2 cut(s) 258, 267
NcoI CCATGG 2 cut(s) 254, 460
NdeII GATC 3 cut(s) 188, 541, 559
NlaIII CATG 3 cut(s) 258, 464, 560
NlaIV GGNNCC 3 cut(s) 120, 199, 335
NmuCI GTSAC 1 cut(s) 509
PdmI GAANNNNTTC 1 cut(s) 624
PfeI GAWTC 1 cut(s) 277
PflMI CCANNNNNTGG 1 cut(s) 144
PkrI GCNGC 3 cut(s) 537, 664, 734
PleI GAGTC 2 cut(s) 480, 752
PpsI GAGTC 2 cut(s) 480, 752
Ppu21I YACGTR 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 762
Psp124BI GAGCTC 2 cut(s) 137, 576
Psp1406I AACGTT 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 530
PspN4I GGNNCC 3 cut(s) 120, 199, 335
PsuI RGATCY 1 cut(s) 541
RsaI GTAC 5 cut(s) 38, 389, 587, 605, 725
RsaNI GTAC 5 cut(s) 37, 388, 586, 604, 724
SacI GAGCTC 2 cut(s) 137, 576
SaqAI TTAA 4 cut(s) 348, 705, 717, 762
SatI GCNGC 3 cut(s) 536, 663, 733
Sau3AI GATC 3 cut(s) 188, 541, 559
ScaI AGTACT 2 cut(s) 389, 725
SchI GAGTC 2 cut(s) 480, 753
SduI GDGCHC 4 cut(s) 137, 254, 576, 793
Sse9I AATT 3 cut(s) 225, 234, 401
SsiI CCGC 1 cut(s) 797
SspMI CTAG 2 cut(s) 503, 639
SstI GAGCTC 2 cut(s) 137, 576
StyI CCWWGG 2 cut(s) 254, 460
TaaI ACNGT 3 cut(s) 111, 247, 308
TaiI ACGT 3 cut(s) 42, 82, 101
TaqI TCGA 5 cut(s) 73, 222, 282, 310, 468
TasI AATT 3 cut(s) 225, 234, 401
TatI WGTACW 3 cut(s) 387, 603, 723
TfiI GAWTC 1 cut(s) 277
Tru1I TTAA 4 cut(s) 348, 705, 717, 762
Tru9I TTAA 4 cut(s) 348, 705, 717, 762
TscAI CASTG 1 cut(s) 114
TseFI GTSAC 1 cut(s) 509
TseI GCWGC 3 cut(s) 535, 662, 732
Tsp45I GTSAC 1 cut(s) 509
TspDTI ATGAA 2 cut(s) 66, 141
TspGWI ACGGA 1 cut(s) 756
TspRI CASTG 1 cut(s) 114
Van91I CCANNNNNTGG 1 cut(s) 144
VspI ATTAAT 1 cut(s) 762
XagI CCTNNNNNAGG 2 cut(s) 366, 698
XapI RAATTY 1 cut(s) 401
XbaI TCTAGA 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 624
XspI CTAG 2 cut(s) 503, 639
ZrmI AGTACT 2 cut(s) 389, 725
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.