Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0005301

Physical Location & Seq

Genomic Coordinates Forward (+)

4798212 .. 4799410

Gene Structure 1199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06590.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGAGGCTCGGATGGCAGAGATTTTCCGAAGCCACAGCCTGGAATATAACCTTACCGGGCTCACGGGAAGTACTCTAGATAGCCACAGGCTTATCTATTTTGCTGGGCTTCAAGGGCATGATAAGCAACATGCTCTTGTGGGTGAACTATTCCTTGGATACTTCACACAGGCAAAATACATCGGGGACAGGGAATTTCTTCTGGAAAGTGCTCAAAAGGTTGGAGTAGAAGGGGCAGCAGAGTTTCTTGAAGACCCCAACAATGGGCTCAATGAGGTCAATGAAGAACTGGAGAAGTACGCAAGAAACATCAATGGAGTCCCACATTTTTTGTTTAACAATGGAAAGCTTGCGTTAAGTGGCGGCCAACCGCCTGAGGTGTTCTTGAGAGCTTTCGAAGCAGCCACAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DSBA

Protein Analysis

138

Amino Acids

15.25

Weight (kDa)

5.17

Isoelectric Point (pI)

27.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005301)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38900 AT5G38900
fragaria_vesca	FvH4_6g46390 FvH4_6g46390 FvH4_6g46390 FvH4_6g46390
malus_domestica	MD09G1074300.v1.1 MD17G1065700.v1.1
prunus_persica	Prupe.3G249000_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1 Prupe.3G249100_v2.0.a1
pyrus_communis	pycom09g00140 pycom17g06590
rosa_chinensis	RchiOBHm_Chr2g0164921
rosa_laevigata	RLG00000021497
rosa_multiflora	Rmu_co8477167.1_g000001 Rmu_sc0001097.1_g000001
rosa_roxburghii	Rroxscaffold_2G00086210 Rroxscaffold_5G00335800
rosa_rugosa	Rorug02G0511200 Rorug02G0511300
rosa_samantha	Rh2AG579500 Rh2BG590500 Rh2CG561200 Rh2DG600900
rosa_wichuraiana	Rw2G048100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	40
AciI	CCGC	2 cut(s)	363, 371
AcoI	YGGCCR	1 cut(s)	364
AcsI	RAATTY	1 cut(s)	194
AdeI	CACNNNGTG	1 cut(s)	411
AfaI	GTAC	2 cut(s)	73, 299
AfiI	CCNNNNNNNGG	3 cut(s)	40, 263, 264
AgsI	TTSAA	2 cut(s)	113, 251
AjnI	CCWGG	1 cut(s)	39
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	2 cut(s)	349, 392
AluI	AGCT	2 cut(s)	349, 392
Alw21I	GWGCWC	1 cut(s)	214
AoxI	GGCC	1 cut(s)	364
ApeKI	GCWGC	2 cut(s)	236, 401
ApoI	RAATTY	1 cut(s)	194
Asp700I	GAANNNNTTC	1 cut(s)	198
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	1 cut(s)	155
AsuII	TTCGAA	1 cut(s)	396
AxyI	CCTNAGG	1 cut(s)	375
BanII	GRGCYC	2 cut(s)	63, 270
BbsI	GAAGAC	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	1 cut(s)	248
BccI	CCATC	1 cut(s)	7
BciT130I	CCWGG	1 cut(s)	41
BciVI	GTATCC	1 cut(s)	152
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	77
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	3 cut(s)	237, 364, 402
BlsI	GCNGC	3 cut(s)	238, 365, 403
BmcAI	AGTACT	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	41, 58
BmrFI	CCNGG	2 cut(s)	41, 58
BpiI	GAAGAC	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	311
Bpu14I	TTCGAA	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	406
BpuMI	CCSGG	1 cut(s)	58
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 263, 264
Bse1I	ACTGG	1 cut(s)	294
Bse21I	CCTNAGG	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	3 cut(s)	40, 263, 264
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	1 cut(s)	294
BseXI	GCAGC	1 cut(s)	248
BseYI	CCCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	214
BsiSI	CCGG	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	200, 305
BslI	CCNNNNNNNGG	3 cut(s)	40, 263, 264
BsmFI	GGGAC	2 cut(s)	200, 305
BsnI	GGCC	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	3 cut(s)	63, 214, 270
BspACI	CCGC	2 cut(s)	363, 371
BspANI	GGCC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	367
BspT104I	TTCGAA	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	294
BssECI	CCNNGG	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	154
Bst2UI	CCWGG	1 cut(s)	41
BstBI	TTCGAA	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	18
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 115, 124, 398
BstNI	CCWGG	1 cut(s)	41
BstNSI	RCATGY	1 cut(s)	134
BstSCI	CCNGG	2 cut(s)	39, 56
BstV1I	GCAGC	1 cut(s)	248
BstV2I	GAAGAC	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	375
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	351
Csp6I	GTAC	2 cut(s)	72, 298
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	2 cut(s)	119, 131
CviQI	GTAC	2 cut(s)	72, 298
DdeI	CTNAG	1 cut(s)	375
DraIII	CACNNNGTG	1 cut(s)	411
EaeI	YGGCCR	1 cut(s)	364
Eco130I	CCWWGG	1 cut(s)	154
Eco24I	GRGCYC	2 cut(s)	63, 270
Eco81I	CCTNAGG	1 cut(s)	375
EcoRII	CCWGG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	154
EcoT38I	GRGCYC	2 cut(s)	63, 270
ErhI	CCWWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	122, 134
FaiI	YATR	3 cut(s)	48, 120, 132
FaqI	GGGAC	2 cut(s)	200, 305
FatI	CATG	2 cut(s)	118, 130
Fnu4HI	GCNGC	3 cut(s)	237, 364, 402
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	2 cut(s)	63, 270
Fsp4HI	GCNGC	3 cut(s)	237, 364, 402
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	3 cut(s)	237, 364, 402
GsaI	CCCAGC	1 cut(s)	108
GsuI	CTGGAG	1 cut(s)	311
HaeIII	GGCC	1 cut(s)	366
HapII	CCGG	1 cut(s)	57
Hin1II	CATG	2 cut(s)	122, 134
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	1 cut(s)	318
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	12, 29
Hpy188III	TCNNGA	4 cut(s)	77, 203, 248, 385
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	1 cut(s)	224
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 115, 124, 398
HpyF3I	CTNAG	1 cut(s)	375
Hsp92II	CATG	2 cut(s)	122, 134
Lsp1109I	GCAGC	1 cut(s)	248
MaeI	CTAG	1 cut(s)	77
MboII	GAAGA	3 cut(s)	191, 263, 296
MhlI	GDGCHC	3 cut(s)	63, 214, 270
MluCI	AATT	1 cut(s)	194
MlyI	GAGTC	1 cut(s)	327
MmeI	TCCRAC	1 cut(s)	202
MnlI	CCTC	2 cut(s)	268, 370
MroXI	GAANNNNTTC	1 cut(s)	198
MseI	TTAA	2 cut(s)	336, 356
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	2 cut(s)	41, 58
MvaI	CCWGG	1 cut(s)	41
MwoI	GCNNNNNNNGC	4 cut(s)	14, 115, 124, 398
NciI	CCSGG	1 cut(s)	58
NlaIII	CATG	2 cut(s)	122, 134
NspI	RCATGY	1 cut(s)	134
NspV	TTCGAA	1 cut(s)	396
PdmI	GAANNNNTTC	1 cut(s)	198
PflMI	CCANNNNNTGG	1 cut(s)	40
PkrI	GCNGC	3 cut(s)	238, 365, 403
PleI	GAGTC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	326
Psp6I	CCWGG	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	104
PspGI	CCWGG	1 cut(s)	39
RsaI	GTAC	2 cut(s)	73, 299
RsaNI	GTAC	2 cut(s)	72, 298
SaqAI	TTAA	2 cut(s)	336, 356
SatI	GCNGC	3 cut(s)	237, 364, 402
ScaI	AGTACT	1 cut(s)	73
SchI	GAGTC	1 cut(s)	327
ScrFI	CCNGG	2 cut(s)	41, 58
SduI	GDGCHC	3 cut(s)	63, 214, 270
SetI	ASST	6 cut(s)	54, 222, 279, 351, 381, 394
SfuI	TTCGAA	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	385
SmoI	CTYRAG	1 cut(s)	385
Sse9I	AATT	1 cut(s)	194
SsiI	CCGC	2 cut(s)	363, 371
SspMI	CTAG	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	39, 56
StyI	CCWWGG	1 cut(s)	154
TaqI	TCGA	1 cut(s)	396
TasI	AATT	1 cut(s)	194
TatI	WGTACW	1 cut(s)	71
TauI	GCSGC	1 cut(s)	366
Tru1I	TTAA	2 cut(s)	336, 356
Tru9I	TTAA	2 cut(s)	336, 356
TseI	GCWGC	2 cut(s)	236, 401
TspDTI	ATGAA	1 cut(s)	297
Van91I	CCANNNNNTGG	1 cut(s)	40
XapI	RAATTY	1 cut(s)	194
XbaI	TCTAGA	1 cut(s)	76
XceI	RCATGY	1 cut(s)	134
XmnI	GAANNNNTTC	1 cut(s)	198
XspI	CTAG	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.