U-box domain-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G40140 |
| fragaria_vesca | FvH4_6g50090 |
| malus_domestica | MD09G1039200.v1.1 MD17G1040200.v1.1 |
| prunus_persica | Prupe.3G278800_v2.0.a1 |
| pyrus_communis | pycom111g03090 pycom17g03600 |
| rosa_chinensis | RchiOBHm_Chr2g0170361 |
| rosa_laevigata | RLG00000021949 |
| rosa_multiflora | Rmu_co8477427.1_g000001 Rmu_sc0011601.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00081400 |
| rosa_rugosa | Rorug02G0548500 |
| rosa_samantha | Rh2AG619900 Rh2BG630900 Rh2CG600900 Rh2DG643800 |
| rosa_wichuraiana | Rw2G051360 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 3 cut(s) | 1273, 1349, 1609 |
| AccII | CGCG | 3 cut(s) | 410, 530, 851 |
| AclWI | GGATC | 1 cut(s) | 1075 |
| AcoI | YGGCCR | 1 cut(s) | 1641 |
| AcuI | CTGAAG | 1 cut(s) | 991 |
| AfaI | GTAC | 5 cut(s) | 601, 802, 924, 1093, 1146 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 200, 647 |
| AflII | CTTAAG | 1 cut(s) | 824 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 878, 910, 1296, 1328 |
| AleI | CACNNNNGTG | 1 cut(s) | 1395 |
| Alw26I | GTCTC | 3 cut(s) | 235, 508, 541 |
| AlwI | GGATC | 1 cut(s) | 1075 |
| Ama87I | CYCGRG | 2 cut(s) | 1291, 1353 |
| AoxI | GGCC | 1 cut(s) | 1641 |
| AseI | ATTAAT | 1 cut(s) | 431 |
| AspA2I | CCTAGG | 1 cut(s) | 280 |
| AsuHPI | GGTGA | 7 cut(s) | 630, 874, 1216, 1279, 1462, 1598, 1631 |
| AvaI | CYCGRG | 2 cut(s) | 1291, 1353 |
| AvrII | CCTAGG | 1 cut(s) | 280 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 681, 713, 1240, 1272 |
| BccI | CCATC | 1 cut(s) | 514 |
| BceAI | ACGGC | 5 cut(s) | 383, 582, 888, 1051, 1053 |
| BcoDI | GTCTC | 3 cut(s) | 235, 508, 541 |
| BfaI | CTAG | 3 cut(s) | 281, 624, 1166 |
| BfmI | CTRYAG | 1 cut(s) | 605 |
| BfrI | CTTAAG | 1 cut(s) | 824 |
| BisI | GCNGC | 4 cut(s) | 405, 408, 528, 1428 |
| BlnI | CCTAGG | 1 cut(s) | 280 |
| BlpI | GCTNAGC | 1 cut(s) | 1482 |
| BlsI | GCNGC | 4 cut(s) | 406, 409, 529, 1429 |
| BmeT110I | CYCGRG | 2 cut(s) | 1291, 1353 |
| BmiI | GGNNCC | 2 cut(s) | 970, 1601 |
| BmsI | GCATC | 1 cut(s) | 771 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 69, 101 |
| BpmI | CTGGAG | 3 cut(s) | 288, 666, 669 |
| Bpu10I | CCTNAGC | 1 cut(s) | 981 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1482 |
| BpuEI | CTTGAG | 1 cut(s) | 550 |
| Bsa29I | ATCGAT | 1 cut(s) | 774 |
| BsaI | GGTCTC | 1 cut(s) | 541 |
| BsaJI | CCNNGG | 2 cut(s) | 280, 408 |
| BsaWI | WCCGGW | 3 cut(s) | 236, 1264, 1583 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 286, 316, 554, 584, 1591, 1621 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 200, 647 |
| Bse118I | RCCGGY | 2 cut(s) | 89, 1602 |
| Bse1I | ACTGG | 1 cut(s) | 17 |
| BseCI | ATCGAT | 1 cut(s) | 774 |
| BseDI | CCNNGG | 2 cut(s) | 280, 408 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 200, 647 |
| BseMII | CTCAG | 4 cut(s) | 213, 741, 995, 1086 |
| BseNI | ACTGG | 1 cut(s) | 17 |
| BseRI | GAGGAG | 4 cut(s) | 1457, 1477, 1568, 1583 |
| BseX3I | CGGCCG | 1 cut(s) | 1641 |
| BsgI | GTGCAG | 1 cut(s) | 804 |
| Bsh1236I | CGCG | 3 cut(s) | 410, 530, 851 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1644 |
| BshFI | GGCC | 1 cut(s) | 1643 |
| BshVI | ATCGAT | 1 cut(s) | 774 |
| BsiEI | CGRYCG | 1 cut(s) | 1644 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1291, 1353 |
| BsiSI | CCGG | 7 cut(s) | 90, 176, 237, 996, 1265, 1584, 1603 |
| BsiWI | CGTACG | 1 cut(s) | 922 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 200, 647 |
| BsmAI | GTCTC | 3 cut(s) | 235, 508, 541 |
| BsmI | GAATGC | 2 cut(s) | 988, 1438 |
| BsnI | GGCC | 1 cut(s) | 1643 |
| Bso31I | GGTCTC | 1 cut(s) | 541 |
| BsoBI | CYCGRG | 2 cut(s) | 1291, 1353 |
| Bsp1407I | TGTACA | 2 cut(s) | 800, 1144 |
| Bsp143I | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1482 |
| BspANI | GGCC | 1 cut(s) | 1643 |
| BspCNI | CTCAG | 4 cut(s) | 212, 740, 994, 1087 |
| BspDI | ATCGAT | 1 cut(s) | 774 |
| BspFNI | CGCG | 3 cut(s) | 410, 530, 851 |
| BspLI | GGNNCC | 2 cut(s) | 970, 1601 |
| BspPI | GGATC | 1 cut(s) | 1075 |
| BspTI | CTTAAG | 1 cut(s) | 824 |
| BspTNI | GGTCTC | 1 cut(s) | 541 |
| BsrFI | RCCGGY | 2 cut(s) | 89, 1602 |
| BsrGI | TGTACA | 2 cut(s) | 800, 1144 |
| BsrI | ACTGG | 1 cut(s) | 17 |
| BssAI | RCCGGY | 2 cut(s) | 89, 1602 |
| BssECI | CCNNGG | 2 cut(s) | 280, 408 |
| BssMI | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| BssT1I | CCWWGG | 1 cut(s) | 280 |
| Bst4CI | ACNGT | 5 cut(s) | 319, 609, 856, 927, 1397 |
| Bst6I | CTCTTC | 4 cut(s) | 238, 640, 1321, 1492 |
| BstAFI | CTTAAG | 1 cut(s) | 824 |
| BstAUI | TGTACA | 2 cut(s) | 800, 1144 |
| BstC8I | GCNNGC | 1 cut(s) | 259 |
| BstDEI | CTNAG | 5 cut(s) | 199, 727, 981, 1095, 1482 |
| BstDSI | CCRYGG | 1 cut(s) | 408 |
| BstFNI | CGCG | 3 cut(s) | 410, 530, 851 |
| BstKTI | GATC | 5 cut(s) | 198, 544, 921, 951, 1083 |
| BstMAI | GTCTC | 3 cut(s) | 235, 508, 541 |
| BstMBI | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| BstMCI | CGRYCG | 1 cut(s) | 1644 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1171, 1427, 1433 |
| BstSFI | CTRYAG | 1 cut(s) | 605 |
| BstUI | CGCG | 3 cut(s) | 410, 530, 851 |
| BstZI | CGGCCG | 1 cut(s) | 1641 |
| Bsu15I | ATCGAT | 1 cut(s) | 774 |
| BsuRI | GGCC | 1 cut(s) | 1643 |
| BsuTUI | ATCGAT | 1 cut(s) | 774 |
| BtgI | CCRYGG | 1 cut(s) | 408 |
| BtsIMutI | CAGTG | 2 cut(s) | 516, 830 |
| Cac8I | GCNNGC | 1 cut(s) | 259 |
| Cfr10I | RCCGGY | 2 cut(s) | 89, 1602 |
| Cfr42I | CCGCGG | 1 cut(s) | 411 |
| ClaI | ATCGAT | 1 cut(s) | 774 |
| CseI | GACGC | 2 cut(s) | 250, 768 |
| Csp6I | GTAC | 5 cut(s) | 600, 801, 923, 1092, 1145 |
| CviAII | CATG | 2 cut(s) | 31, 1109 |
| CviQI | GTAC | 5 cut(s) | 600, 801, 923, 1092, 1145 |
| DdeI | CTNAG | 5 cut(s) | 199, 727, 981, 1095, 1482 |
| DpnI | GATC | 5 cut(s) | 197, 543, 920, 950, 1082 |
| DpnII | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| DraI | TTTAAA | 2 cut(s) | 339, 1411 |
| EaeI | YGGCCR | 1 cut(s) | 1641 |
| EagI | CGGCCG | 1 cut(s) | 1641 |
| Eam1104I | CTCTTC | 4 cut(s) | 238, 640, 1321, 1492 |
| EarI | CTCTTC | 4 cut(s) | 238, 640, 1321, 1492 |
| EciI | GGCGGA | 2 cut(s) | 391, 982 |
| EclXI | CGGCCG | 1 cut(s) | 1641 |
| Eco130I | CCWWGG | 1 cut(s) | 280 |
| Eco31I | GGTCTC | 1 cut(s) | 541 |
| Eco52I | CGGCCG | 1 cut(s) | 1641 |
| Eco57I | CTGAAG | 1 cut(s) | 991 |
| Eco88I | CYCGRG | 2 cut(s) | 1291, 1353 |
| EcoT14I | CCWWGG | 1 cut(s) | 280 |
| ErhI | CCWWGG | 1 cut(s) | 280 |
| FaeI | CATG | 2 cut(s) | 34, 1112 |
| FatI | CATG | 2 cut(s) | 30, 1108 |
| FblI | GTMKAC | 3 cut(s) | 1273, 1349, 1609 |
| Fnu4HI | GCNGC | 4 cut(s) | 405, 408, 528, 1428 |
| Fsp4HI | GCNGC | 4 cut(s) | 405, 408, 528, 1428 |
| FspBI | CTAG | 3 cut(s) | 281, 624, 1166 |
| GluI | GCNGC | 4 cut(s) | 405, 408, 528, 1428 |
| GsuI | CTGGAG | 3 cut(s) | 288, 666, 669 |
| HaeIII | GGCC | 1 cut(s) | 1643 |
| HapII | CCGG | 7 cut(s) | 90, 176, 237, 996, 1265, 1584, 1603 |
| HgaI | GACGC | 2 cut(s) | 250, 768 |
| Hin1II | CATG | 2 cut(s) | 34, 1112 |
| HincII | GTYRAC | 6 cut(s) | 612, 1101, 1274, 1350, 1610, 1636 |
| HindII | GTYRAC | 6 cut(s) | 612, 1101, 1274, 1350, 1610, 1636 |
| HindIII | AAGCTT | 4 cut(s) | 416, 693, 741, 1172 |
| HpaI | GTTAAC | 3 cut(s) | 612, 1101, 1636 |
| HpaII | CCGG | 7 cut(s) | 90, 176, 237, 996, 1265, 1584, 1603 |
| HphI | GGTGA | 7 cut(s) | 630, 874, 1216, 1279, 1462, 1598, 1631 |
| Hpy166II | GTNNAC | 9 cut(s) | 365, 602, 612, 886, 1101, 1274, 1350, 1610, 1636 |
| Hpy188I | TCNGA | 9 cut(s) | 159, 195, 472, 546, 574, 730, 1055, 1085, 1599 |
| Hpy8I | GTNNAC | 9 cut(s) | 365, 602, 612, 886, 1101, 1274, 1350, 1610, 1636 |
| Hpy99I | CGWCG | 7 cut(s) | 78, 535, 762, 856, 956, 977, 1397 |
| HpyAV | CCTTC | 2 cut(s) | 651, 1483 |
| HpyCH4III | ACNGT | 5 cut(s) | 319, 609, 856, 927, 1397 |
| HpyCH4IV | ACGT | 1 cut(s) | 954 |
| HpyCH4V | TGCA | 1 cut(s) | 821 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1171, 1427, 1433 |
| HpyF3I | CTNAG | 5 cut(s) | 199, 727, 981, 1095, 1482 |
| HpySE526I | ACGT | 1 cut(s) | 954 |
| Hsp92II | CATG | 2 cut(s) | 34, 1112 |
| KspAI | GTTAAC | 3 cut(s) | 612, 1101, 1636 |
| KspI | CCGCGG | 1 cut(s) | 411 |
| Kzo9I | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| LmnI | GCTCC | 5 cut(s) | 535, 575, 985, 1178, 1599 |
| LweI | GCATC | 1 cut(s) | 771 |
| MaeI | CTAG | 3 cut(s) | 281, 624, 1166 |
| MaeII | ACGT | 1 cut(s) | 954 |
| MaeIII | GTNAC | 5 cut(s) | 59, 239, 828, 868, 1388 |
| MalI | GATC | 5 cut(s) | 197, 543, 920, 950, 1082 |
| MboI | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| MluCI | AATT | 5 cut(s) | 151, 348, 553, 1524, 1579 |
| MlyI | GAGTC | 8 cut(s) | 587, 1106, 1279, 1283, 1345, 1355, 1396, 1605 |
| MmeI | TCCRAC | 3 cut(s) | 182, 317, 1577 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1395 |
| MspA1I | CMGCKG | 2 cut(s) | 357, 410 |
| MspCI | CTTAAG | 1 cut(s) | 824 |
| MspI | CCGG | 7 cut(s) | 90, 176, 237, 996, 1265, 1584, 1603 |
| Mva1269I | GAATGC | 2 cut(s) | 988, 1438 |
| MvnI | CGCG | 3 cut(s) | 410, 530, 851 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1171, 1427, 1433 |
| NdeII | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| NlaIII | CATG | 2 cut(s) | 34, 1112 |
| NlaIV | GGNNCC | 2 cut(s) | 970, 1601 |
| NmeAIII | GCCGAG | 3 cut(s) | 1084, 1094, 1619 |
| NmuCI | GTSAC | 5 cut(s) | 59, 239, 828, 868, 1388 |
| OliI | CACNNNNGTG | 1 cut(s) | 1395 |
| PctI | GAATGC | 2 cut(s) | 988, 1438 |
| Pfl23II | CGTACG | 1 cut(s) | 922 |
| PkrI | GCNGC | 4 cut(s) | 406, 409, 529, 1429 |
| PleI | GAGTC | 8 cut(s) | 586, 1106, 1278, 1283, 1345, 1354, 1395, 1605 |
| PpsI | GAGTC | 8 cut(s) | 586, 1106, 1278, 1283, 1345, 1354, 1395, 1605 |
| PshBI | ATTAAT | 1 cut(s) | 431 |
| PspLI | CGTACG | 1 cut(s) | 922 |
| PspN4I | GGNNCC | 2 cut(s) | 970, 1601 |
| PvuII | CAGCTG | 1 cut(s) | 357 |
| RsaI | GTAC | 5 cut(s) | 601, 802, 924, 1093, 1146 |
| RsaNI | GTAC | 5 cut(s) | 600, 801, 923, 1092, 1145 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1395 |
| SacII | CCGCGG | 1 cut(s) | 411 |
| SalI | GTCGAC | 3 cut(s) | 1272, 1348, 1608 |
| SatI | GCNGC | 4 cut(s) | 405, 408, 528, 1428 |
| Sau3AI | GATC | 5 cut(s) | 195, 541, 918, 948, 1080 |
| SchI | GAGTC | 8 cut(s) | 587, 1106, 1279, 1283, 1345, 1355, 1396, 1605 |
| SfaNI | GCATC | 1 cut(s) | 771 |
| SfcI | CTRYAG | 1 cut(s) | 605 |
| Sfr303I | CCGCGG | 1 cut(s) | 411 |
| SgrBI | CCGCGG | 1 cut(s) | 411 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1395 |
| SmlI | CTYRAG | 2 cut(s) | 565, 824 |
| SmoI | CTYRAG | 2 cut(s) | 565, 824 |
| Sse9I | AATT | 5 cut(s) | 151, 348, 553, 1524, 1579 |
| SspMI | CTAG | 3 cut(s) | 281, 624, 1166 |
| StyI | CCWWGG | 1 cut(s) | 280 |
| TaaI | ACNGT | 5 cut(s) | 319, 609, 856, 927, 1397 |
| TaiI | ACGT | 1 cut(s) | 957 |
| TasI | AATT | 5 cut(s) | 151, 348, 553, 1524, 1579 |
| TatI | WGTACW | 2 cut(s) | 800, 1144 |
| TauI | GCSGC | 4 cut(s) | 407, 410, 530, 1430 |
| TscAI | CASTG | 2 cut(s) | 516, 837 |
| TseFI | GTSAC | 5 cut(s) | 59, 239, 828, 868, 1388 |
| Tsp45I | GTSAC | 5 cut(s) | 59, 239, 828, 868, 1388 |
| TspDTI | ATGAA | 5 cut(s) | 120, 129, 633, 792, 1064 |
| TspGWI | ACGGA | 3 cut(s) | 548, 933, 961 |
| TspRI | CASTG | 2 cut(s) | 516, 837 |
| Vha464I | CTTAAG | 1 cut(s) | 824 |
| VspI | ATTAAT | 1 cut(s) | 431 |
| XmaJI | CCTAGG | 1 cut(s) | 280 |
| XmiI | GTMKAC | 3 cut(s) | 1273, 1349, 1609 |
| XspI | CTAG | 3 cut(s) | 281, 624, 1166 |