Rorug02G0548500

RING-type E3 ubiquitin transferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Forward (+)
67619808 .. 67622709
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0548500.1

Sequence Viewer

Length: 1179 bp
ATGAACAAAATCTCTCTCACCACCTTAACCCGAAGAGAGAGAGAGAGAAAGATGCAGACCCGGTTCTCAGCCCTAACCCGAACCCTAAAGTCCACGACCCGATCCTTCTCCTCCTCCACGCCGTCAACCACATCCTCCTCCCAATTCCCGCCAACTCTGGCGGGCCTCCGGGCCCGCCTCGCCGCCGAGTCTCCCACTCTCACGGAGTTCGTCGAAGGCGAAGGTCCGTACTCCGTGGAGGTCGGGACGAAGAAGAAGCCGCTGCCGAAGCCGAAATGGATGAAGGAGTCGATCCCCGGCGGCGAGAAGTACACGCAGATTAAGAAGAAGCTCAGGGAATTGAAGCTCCACACGGTCTGCGAGGAGGCCAAGTGTCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAAACGGGAACGGCCACCGCCACGATCATGATTCTCGGCGACACGTGTACCCGCGGGTGCAGGTTTTGTAATGTGAAGACTTCAAGGACTCCACCGCCGCCGGACCCCAATGAGCCGGCGAATGTGGCGGAGGCGATTGCATCGTGGGGGTTGGATTATGTGGTGATTACTAGCGTGGACCGGGATGATATGCCTGATCAAGGGAGTGGACATTTTGCTGAGACCGTGATCAAGTTGAAGAAGCTCAAACCCAATATGCTAATCGAGGCTTTAATTCCTGATTTTCGAGGGGATTCGGGTTGTGTCAAGAAAGTTGCAACATCAGGATTAGATGTCCTTGCTCACAATATTGAGACTGTGGAAGAGCTTCAGAGGGCAGTACGGGATCATCGTGCGAATTTCAAACAATCTTTAGATGTTTTGATGATGGCCAAAGAGTATGCTCCTGCTGGGACACTAACAAAGACTTCAGTAATGTTAGGTTGTGGGGAGACACCTGATCAAGTTGTGAAGACAATGGAGAAGGTGAGAGCAGCTGGTGTTGATGTGATGACATTTGGTCAATATATGCGACCCTCAAAGCGCCATATGCCTGTGTCTGAATACGTCACTCCTGAGGCTTTTGATAAGTATCGAGAGATTGGCGAGGAAATGGGGTTCCGGTATGTGGCATCTGGTCCCATGGTCAGGTCGTCATACAAAGCAGGTGAATACTATATCAAATCTATGATAGAGGCCGATCGGGCTGCATCCTCGCACCCTTCTGCCGCATGA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

392

Amino Acids

43.2

Weight (kDa)

9.01

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LIAS_N PF16881 59 - 125 4.1e-14 N-terminal domain of lipoyl synthase of Radical_SAM family
Radical_SAM PF04055 145 - 310 6.7e-21 Radical SAM superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012888)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1100
Acc36I ACCTGC 2 cut(s) 456, 1100
AccII CGCG 1 cut(s) 459
AclWI GGATC 3 cut(s) 96, 286, 798
AcoI YGGCCR 2 cut(s) 417, 834
AcsI RAATTY 1 cut(s) 802
AcuI CTGAAG 2 cut(s) 758, 858
AcvI CACGTG 1 cut(s) 450
AfaI GTAC 4 cut(s) 230, 311, 454, 786
AfiI CCNNNNNNNGG 4 cut(s) 383, 605, 1072, 1092
AflIII ACRYGT 2 cut(s) 447, 449
AgsI TTSAA 4 cut(s) 343, 489, 643, 808
AhdI GACNNNNNGTC 1 cut(s) 963
AloI GAACNNNNNNTCC 2 cut(s) 1046, 1078
AluBI AGCT 5 cut(s) 331, 346, 649, 772, 941
AluI AGCT 5 cut(s) 331, 346, 649, 772, 941
Alw26I GTCTC 4 cut(s) 195, 620, 752, 890
AlwI GGATC 3 cut(s) 96, 286, 798
AoxI GGCC 6 cut(s) 163, 171, 366, 417, 834, 1140
ApaI GGGCCC 1 cut(s) 175
ApeKI GCWGC 3 cut(s) 262, 938, 1151
ApoI RAATTY 1 cut(s) 802
Asp700I GAANNNNTTC 1 cut(s) 771
AspLEI GCGC 1 cut(s) 990
AspS9I GGNCC 8 cut(s) 163, 171, 172, 224, 396, 508, 583, 1082
AsuC2I CCSGG 4 cut(s) 61, 170, 297, 587
AsuHPI GGTGA 4 cut(s) 10, 580, 943, 1124
AvaII GGWCC 5 cut(s) 224, 396, 508, 583, 1082
AxyI CCTNAGG 1 cut(s) 1020
BaeGI GKGCMC 1 cut(s) 175
BaeI ACNNNNGTAYC 2 cut(s) 436, 469
BalI TGGCCA 1 cut(s) 836
BanII GRGCYC 1 cut(s) 175
BbrPI CACGTG 1 cut(s) 450
BbsI GAAGAC 2 cut(s) 488, 923
BbvI GCAGC 3 cut(s) 249, 950, 1138
BccI CCATC 1 cut(s) 826
BceAI ACGGC 2 cut(s) 106, 432
BcgI CGANNNNNNTGC 2 cut(s) 1133, 1167
BclI TGATCA 3 cut(s) 601, 633, 904
BcnI CCSGG 4 cut(s) 61, 170, 297, 587
BcoDI GTCTC 4 cut(s) 195, 620, 752, 890
BfaI CTAG 1 cut(s) 576
BfoI RGCGCY 1 cut(s) 991
BfuAI ACCTGC 2 cut(s) 456, 1100
BglI GCCNNNNNGGC 1 cut(s) 1148
BisI GCNGC 9 cut(s) 183, 260, 263, 301, 403, 503, 939, 1152, 1173
BlsI GCNGC 9 cut(s) 184, 261, 264, 302, 404, 504, 940, 1153, 1174
Bme1390I CCNGG 4 cut(s) 61, 170, 297, 587
Bme18I GGWCC 5 cut(s) 224, 396, 508, 583, 1082
BmeRI GACNNNNNGTC 1 cut(s) 963
BmgT120I GGNCC 8 cut(s) 163, 171, 172, 224, 396, 508, 583, 1082
BmiI GGNNCC 4 cut(s) 173, 510, 1064, 1084
BmrFI CCNGG 4 cut(s) 61, 170, 297, 587
BmsI GCATC 4 cut(s) 42, 554, 1085, 1163
BpiI GAAGAC 2 cut(s) 488, 923
Bpu10I CCTNAGC 1 cut(s) 332
BpuMI CCSGG 4 cut(s) 61, 170, 297, 587
BsaAI YACGTR 1 cut(s) 450
BsaBI GATNNNNATC 1 cut(s) 1035
BsaI GGTCTC 1 cut(s) 620
BsaJI CCNNGG 5 cut(s) 234, 295, 382, 457, 1086
BsaWI WCCGGW 1 cut(s) 1065
BsaXI ACNNNNNCTCC 2 cut(s) 356, 386
Bsc4I CCNNNNNNNGG 4 cut(s) 383, 605, 1072, 1092
Bse118I RCCGGY 1 cut(s) 520
Bse21I CCTNAGG 1 cut(s) 1020
Bse8I GATNNNNATC 1 cut(s) 1035
BseDI CCNNGG 5 cut(s) 234, 295, 382, 457, 1086
BseGI GGATG 4 cut(s) 131, 285, 595, 1154
BseJI GATNNNNATC 1 cut(s) 1035
BseLI CCNNNNNNNGG 4 cut(s) 383, 605, 1072, 1092
BseMII CTCAG 4 cut(s) 81, 346, 615, 1011
BseRI GAGGAG 4 cut(s) 100, 103, 127, 377
BseSI GKGCMC 1 cut(s) 175
BseXI GCAGC 3 cut(s) 249, 950, 1138
BseYI CCCAGC 1 cut(s) 854
BsgI GTGCAG 1 cut(s) 484
Bsh1236I CGCG 1 cut(s) 459
Bsh1285I CGRYCG 1 cut(s) 1147
BshFI GGCC 6 cut(s) 165, 173, 368, 419, 836, 1142
BsiEI CGRYCG 1 cut(s) 1147
BsiSI CCGG 8 cut(s) 61, 169, 297, 399, 506, 521, 586, 1066
BslFI GGGAC 4 cut(s) 259, 360, 871, 1068
BslI CCNNNNNNNGG 4 cut(s) 383, 605, 1072, 1092
BsmAI GTCTC 4 cut(s) 195, 620, 752, 890
BsmFI GGGAC 4 cut(s) 259, 360, 871, 1068
BsnI GGCC 6 cut(s) 165, 173, 368, 419, 836, 1142
Bso31I GGTCTC 1 cut(s) 620
Bsp120I GGGCCC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 175
Bsp143I GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
Bsp19I CCATGG 1 cut(s) 1086
BspANI GGCC 6 cut(s) 165, 173, 368, 419, 836, 1142
BspCNI CTCAG 4 cut(s) 80, 345, 616, 1012
BspFNI CGCG 1 cut(s) 459
BspHI TCATGA 1 cut(s) 432
BspLI GGNNCC 4 cut(s) 173, 510, 1064, 1084
BspMI ACCTGC 2 cut(s) 456, 1100
BspPI GGATC 3 cut(s) 96, 286, 798
BspQI GCTCTTC 1 cut(s) 762
BspTNI GGTCTC 1 cut(s) 620
BsrFI RCCGGY 1 cut(s) 520
BssAI RCCGGY 1 cut(s) 520
BssECI CCNNGG 5 cut(s) 234, 295, 382, 457, 1086
BssMI GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
BssT1I CCWWGG 1 cut(s) 1086
Bst4CI ACNGT 3 cut(s) 355, 631, 763
Bst6I CTCTTC 2 cut(s) 28, 762
BstBAI YACGTR 1 cut(s) 450
BstC8I GCNNGC 3 cut(s) 163, 175, 522
BstDEI CTNAG 4 cut(s) 67, 332, 624, 1020
BstDSI CCRYGG 3 cut(s) 234, 457, 1086
BstENI CCTNNNNNAGG 1 cut(s) 603
BstF5I GGATG 4 cut(s) 131, 285, 595, 1154
BstFNI CGCG 1 cut(s) 459
BstH2I RGCGCY 1 cut(s) 991
BstHHI GCGC 1 cut(s) 990
BstKTI GATC 8 cut(s) 104, 294, 432, 604, 636, 793, 907, 1147
BstMAI GTCTC 4 cut(s) 195, 620, 752, 890
BstMBI GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
BstMCI CGRYCG 1 cut(s) 1147
BstMWI GCNNNNNNNGC 6 cut(s) 179, 268, 399, 530, 994, 1148
BstSCI CCNGG 4 cut(s) 59, 168, 295, 585
BstSLI GKGCMC 1 cut(s) 175
BstUI CGCG 1 cut(s) 459
BstV1I GCAGC 3 cut(s) 249, 950, 1138
BstV2I GAAGAC 2 cut(s) 488, 923
Bsu36I CCTNAGG 1 cut(s) 1020
BsuRI GGCC 6 cut(s) 165, 173, 368, 419, 836, 1142
BtgI CCRYGG 3 cut(s) 234, 457, 1086
BtsCI GGATG 4 cut(s) 131, 285, 595, 1154
BveI ACCTGC 2 cut(s) 456, 1100
Cac8I GCNNGC 3 cut(s) 163, 175, 522
CciI TCATGA 1 cut(s) 432
CfoI GCGC 1 cut(s) 990
Cfr10I RCCGGY 1 cut(s) 520
Cfr13I GGNCC 8 cut(s) 163, 171, 172, 224, 396, 508, 583, 1082
Cfr42I CCGCGG 1 cut(s) 460
Csp6I GTAC 4 cut(s) 229, 310, 453, 785
CviAII CATG 3 cut(s) 433, 1087, 1176
CviQI GTAC 4 cut(s) 229, 310, 453, 785
DdeI CTNAG 4 cut(s) 67, 332, 624, 1020
DpnI GATC 8 cut(s) 103, 293, 431, 603, 635, 792, 906, 1146
DpnII GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
DriI GACNNNNNGTC 1 cut(s) 963
EaeI YGGCCR 2 cut(s) 417, 834
Eam1104I CTCTTC 2 cut(s) 28, 762
Eam1105I GACNNNNNGTC 1 cut(s) 963
EarI CTCTTC 2 cut(s) 28, 762
EciI GGCGGA 1 cut(s) 548
Eco130I CCWWGG 1 cut(s) 1086
Eco24I GRGCYC 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 620
Eco47I GGWCC 5 cut(s) 224, 396, 508, 583, 1082
Eco57I CTGAAG 2 cut(s) 758, 858
Eco72I CACGTG 1 cut(s) 450
Eco81I CCTNAGG 1 cut(s) 1020
EcoNI CCTNNNNNAGG 1 cut(s) 603
EcoT14I CCWWGG 1 cut(s) 1086
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 1086
FaeI CATG 3 cut(s) 436, 1090, 1179
FaqI GGGAC 4 cut(s) 259, 360, 871, 1068
FatI CATG 3 cut(s) 432, 1086, 1175
FauI CCCGC 5 cut(s) 154, 156, 182, 452, 464
FauNDI CATATG 1 cut(s) 993
FbaI TGATCA 3 cut(s) 601, 633, 904
Fnu4HI GCNGC 9 cut(s) 183, 260, 263, 301, 403, 503, 939, 1152, 1173
FokI GGATG 4 cut(s) 118, 292, 602, 1141
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 9 cut(s) 183, 260, 263, 301, 403, 503, 939, 1152, 1173
FspBI CTAG 1 cut(s) 576
GlaI GCGC 1 cut(s) 989
GluI GCNGC 9 cut(s) 183, 260, 263, 301, 403, 503, 939, 1152, 1173
GsaI CCCAGC 1 cut(s) 858
HaeII RGCGCY 1 cut(s) 991
HaeIII GGCC 6 cut(s) 165, 173, 368, 419, 836, 1142
HapII CCGG 8 cut(s) 61, 169, 297, 399, 506, 521, 586, 1066
HhaI GCGC 1 cut(s) 990
Hin1II CATG 3 cut(s) 436, 1090, 1179
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HincII GTYRAC 1 cut(s) 126
HindII GTYRAC 1 cut(s) 126
HinfI GANTC 5 cut(s) 188, 287, 436, 493, 698
HpaII CCGG 8 cut(s) 61, 169, 297, 399, 506, 521, 586, 1066
HphI GGTGA 4 cut(s) 10, 580, 943, 1124
Hpy166II GTNNAC 6 cut(s) 93, 126, 312, 453, 583, 614
Hpy188I TCNGA 2 cut(s) 777, 1006
Hpy188III TCNNGA 7 cut(s) 244, 433, 683, 712, 729, 1019, 1040
Hpy8I GTNNAC 6 cut(s) 93, 126, 312, 453, 583, 614
Hpy99I CGWCG 1 cut(s) 215
HpyAV CCTTC 6 cut(s) 115, 209, 215, 277, 922, 1176
HpyCH4III ACNGT 3 cut(s) 355, 631, 763
HpyCH4IV ACGT 2 cut(s) 449, 1011
HpyCH4V TGCA 5 cut(s) 55, 465, 545, 722, 1154
HpyF10VI GCNNNNNNNGC 6 cut(s) 179, 268, 399, 530, 994, 1148
HpyF3I CTNAG 4 cut(s) 67, 332, 624, 1020
HpySE526I ACGT 2 cut(s) 449, 1011
Hsp92II CATG 3 cut(s) 436, 1090, 1179
HspAI GCGC 1 cut(s) 988
KroI GCCGGC 1 cut(s) 520
KroNI GCCGGC 1 cut(s) 522
Ksp22I TGATCA 3 cut(s) 601, 633, 904
KspI CCGCGG 1 cut(s) 460
Kzo9I GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
LguI GCTCTTC 1 cut(s) 762
LmnI GCTCC 2 cut(s) 351, 853
Lsp1109I GCAGC 3 cut(s) 249, 950, 1138
LweI GCATC 4 cut(s) 42, 554, 1085, 1163
MaeI CTAG 1 cut(s) 576
MaeII ACGT 2 cut(s) 449, 1011
MaeIII GTNAC 1 cut(s) 1012
MalI GATC 8 cut(s) 103, 293, 431, 603, 635, 792, 906, 1146
MboI GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
MboII GAAGA 8 cut(s) 45, 262, 265, 337, 493, 655, 779, 928
MhlI GDGCHC 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 836
MluCI AATT 4 cut(s) 143, 338, 678, 802
MluNI TGGCCA 1 cut(s) 836
MlyI GAGTC 3 cut(s) 197, 296, 487
MmeI TCCRAC 1 cut(s) 537
Mox20I TGGCCA 1 cut(s) 836
MroNI GCCGGC 1 cut(s) 520
MroXI GAANNNNTTC 1 cut(s) 771
MscI TGGCCA 1 cut(s) 836
MseI TTAA 3 cut(s) 26, 321, 677
MslI CAYNNNNRTG 1 cut(s) 431
Msp20I TGGCCA 1 cut(s) 836
MspA1I CMGCKG 3 cut(s) 262, 459, 941
MspI CCGG 8 cut(s) 61, 169, 297, 399, 506, 521, 586, 1066
MspR9I CCNGG 4 cut(s) 61, 170, 297, 587
MvnI CGCG 1 cut(s) 459
MwoI GCNNNNNNNGC 6 cut(s) 179, 268, 399, 530, 994, 1148
NaeI GCCGGC 1 cut(s) 522
NciI CCSGG 4 cut(s) 61, 170, 297, 587
NcoI CCATGG 1 cut(s) 1086
NdeI CATATG 1 cut(s) 993
NdeII GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
NgoMIV GCCGGC 1 cut(s) 520
NlaIII CATG 3 cut(s) 436, 1090, 1179
NlaIV GGNNCC 4 cut(s) 173, 510, 1064, 1084
NmeAIII GCCGAG 3 cut(s) 211, 363, 420
NmuCI GTSAC 1 cut(s) 1012
PagI TCATGA 1 cut(s) 432
PaqCI CACCTGC 1 cut(s) 1100
PciSI GCTCTTC 1 cut(s) 762
PcsI WCGNNNNNNNCGW 2 cut(s) 216, 793
PdiI GCCGGC 1 cut(s) 522
PdmI GAANNNNTTC 1 cut(s) 771
PfeI GAWTC 2 cut(s) 436, 698
PkrI GCNGC 9 cut(s) 184, 261, 264, 302, 404, 504, 940, 1153, 1174
Ple19I CGATCG 1 cut(s) 1147
PleI GAGTC 3 cut(s) 196, 295, 487
PmaCI CACGTG 1 cut(s) 450
PmlI CACGTG 1 cut(s) 450
PpsI GAGTC 3 cut(s) 196, 295, 487
Ppu21I YACGTR 1 cut(s) 450
PspCI CACGTG 1 cut(s) 450
PspFI CCCAGC 1 cut(s) 854
PspN4I GGNNCC 4 cut(s) 173, 510, 1064, 1084
PspOMI GGGCCC 1 cut(s) 171
PspPI GGNCC 8 cut(s) 163, 171, 172, 224, 396, 508, 583, 1082
PvuI CGATCG 1 cut(s) 1147
PvuII CAGCTG 1 cut(s) 941
RsaI GTAC 4 cut(s) 230, 311, 454, 786
RsaNI GTAC 4 cut(s) 229, 310, 453, 785
RseI CAYNNNNRTG 1 cut(s) 431
SacII CCGCGG 1 cut(s) 460
SapI GCTCTTC 1 cut(s) 762
SaqAI TTAA 3 cut(s) 26, 321, 677
SatI GCNGC 9 cut(s) 183, 260, 263, 301, 403, 503, 939, 1152, 1173
Sau3AI GATC 8 cut(s) 101, 291, 429, 601, 633, 790, 904, 1144
Sau96I GGNCC 8 cut(s) 163, 171, 172, 224, 396, 508, 583, 1082
SchI GAGTC 3 cut(s) 197, 296, 487
ScrFI CCNGG 4 cut(s) 61, 170, 297, 587
SduI GDGCHC 1 cut(s) 175
SfaNI GCATC 4 cut(s) 42, 554, 1085, 1163
Sfr303I CCGCGG 1 cut(s) 460
SgrBI CCGCGG 1 cut(s) 460
SinI GGWCC 5 cut(s) 224, 396, 508, 583, 1082
SmiMI CAYNNNNRTG 1 cut(s) 431
Sse9I AATT 4 cut(s) 143, 338, 678, 802
SspI AATATT 1 cut(s) 754
SspMI CTAG 1 cut(s) 576
StyD4I CCNGG 4 cut(s) 59, 168, 295, 585
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 3 cut(s) 355, 631, 763
TaiI ACGT 2 cut(s) 452, 1014
TaqI TCGA 5 cut(s) 213, 290, 669, 691, 1039
TasI AATT 4 cut(s) 143, 338, 678, 802
TatI WGTACW 1 cut(s) 309
TauI GCSGC 6 cut(s) 185, 262, 303, 405, 505, 1175
TfiI GAWTC 2 cut(s) 436, 698
Tru1I TTAA 3 cut(s) 26, 321, 677
Tru9I TTAA 3 cut(s) 26, 321, 677
TseFI GTSAC 1 cut(s) 1012
TseI GCWGC 3 cut(s) 262, 938, 1151
Tsp45I GTSAC 1 cut(s) 1012
TspDTI ATGAA 2 cut(s) 17, 296
TspGWI ACGGA 3 cut(s) 216, 218, 223
VpaK11BI GGWCC 5 cut(s) 224, 396, 508, 583, 1082
XagI CCTNNNNNAGG 1 cut(s) 603
XapI RAATTY 1 cut(s) 802
XmnI GAANNNNTTC 1 cut(s) 771
XspI CTAG 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.