Rh2AG619900

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0012888
Physical Location & Seq
Forward (+)
84369400 .. 84373174
3775 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG619900.1

Sequence Viewer

Length: 1671 bp
ATGGAGTTGAAAGAGGGTCTGATGAGATTAGTAGTCCACAAATCTAAAGAAACCAATTGCGTTTACGACGCCGGGGACAGATTAACAGATATAATAACCAGTGCTCGAAGCCCAAACCGGAGATGGAAGCTCTTTCACAGGTCCTCATCTGCAATTCCATCAAAGCCTTCAAAGCCTCAAATCCCAAGAGAGTTCATTTGCCCCATTTCCGGGTCGTTAATGGCCGACCCGGTTATAGTCTCCTCGGGTCACACCTTCGAACGGGTCTGCGTCCAAGTCTGCAAAGCCCTCAACTTCACCCCTAATCTCGTCGACTCGCCCCCACCTGATCTCACCTCCGTCATCCCCAACCTCGCCCTCAAGTCCACCATCCTCAACTGGTGTCAAAATTACTCTATTGCCCCTCCGAAGCCCCCAGACTCCATCTCCGCGGAGAAGCTCGTCCGTACATCCATGGCGTCCGATCACCGGAAAGTCTCGGTTTCCGATAACGAGTCGCTGATCCGAGGCGTGGAGGAGACGCCTAACGTGAGCTTCAACCACGCGGCGACCGAGTTGACTCGTCGGCCGAGTCACTTCCACTCCAGCTCCGACGAGTCGGTCAGCGACGCTGCGTTGACCCCGCCGCTGCCGTTCTCGACTCAGCCGAGCTGCTACTCGTCGCGTTCGTCTTCGTGTTCGGAAATCGAAGCCCTGACGAATTCGAACGAGGAAGACGAAGTCTTGGCCCGGCTCAGAAGCGTCCACGTGTCCGAAATCGAGGAGGCTCTGACGTGGCTGAGGAAGATCACACGGACCAGAGAGGACGCCCGGGCCCACCTCTGCAGTCCTCGGCTCCTCTCCGCCTTGAGACCCCTCGTCGTTTCCAGGTACGCCAATATTCAGGTGAACTCAGTCGCAGTTTTGGTTAACCTTTCGCTGGAAAAGTCAAACAAGATTAAGATCGTACGGTCAGGAATTCTCCCGCCTTTGATTGATGTGCTTAAGGCGGGAACGTCCGAGGCGCAGGAGCACGCCTCCGGTGTGGTCTTTAGTTTGGCGTTGGATGATGATTGCAAGACGGCTATCGGTGTATTGGGGGCTTTGCCGCCTTTGCTTCACTTGCTCAACTCGGAGGGCGAGCGGACTGGGCATGACTCGGCACTTGCTTTGTACCATTTGACATTGGTTCAGAGCAATCGGTCCAAGTTGGTTAAGATCGGGTCGGTTCCGGTTCTTTTGAGGATGGTGAAGTCGGGTCACATGACGGGTCGGGTATTGCTCACATTGTGTAATTTGAGTTCGTGTGCGGACGGGAGGGCTGCGATGTTGGATTCGGGTGGGGTGGAGTGTTTGGTAGGGATTTTGAGGGGGAATGAGTTTGATTCCCGGTCGACTCAGGAGAGTTGCGTGGCTACATTGTATGGGTTGAGTCGTGGGGGTTTAAGGTTTAAGGGGTTGGCGAAGGCGGCCGGGGCGGTGGAGGTGTTGAGAGAAGTGGAGAAGAGTGGGAGTGAGAGAGGGAGGGAGAAGGCGAGGAGAATGTTGGAGATGATGAGAGGGAGAGAGAAGGAGGAAGAGGAGGAAGTGGATTGGGAGGAGTTGCTTGACTCGGGCTTGGGAAGTCGAACTAGGTTTCAGCCGAGTGGTGGTGCATTGGGTGGGTCTTGTGTCAACTCGTCCGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04934 map04934
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

556

Amino Acids

60.54

Weight (kDa)

7.56

Isoelectric Point (pI)

52.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 61 - 130 1.4e-10 U-box domain
ARM_PUB PF25598 245 - 513 3.3e-10 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 256 - 414 7.9e-06 ARMC5
ARM_ARMC5 PF24768 350 - 467 2.2e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40140
fragaria_vesca FvH4_6g50090
malus_domestica MD09G1039200.v1.1 MD17G1040200.v1.1
prunus_persica Prupe.3G278800_v2.0.a1
pyrus_communis pycom111g03090 pycom17g03600
rosa_chinensis RchiOBHm_Chr2g0170361
rosa_laevigata RLG00000021949
rosa_multiflora Rmu_co8477427.1_g000001 Rmu_sc0011601.1_g000012
rosa_roxburghii Rroxscaffold_2G00081400
rosa_rugosa Rorug02G0548500
rosa_samantha Rh2AG619900 Rh2BG630900 Rh2CG600900 Rh2DG643800
rosa_wichuraiana Rw2G051360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 599
AccBSI CCGCTC 1 cut(s) 1123
AccI GTMKAC 2 cut(s) 312, 1373
AccII CGCG 3 cut(s) 431, 545, 664
AclWI GGATC 1 cut(s) 496
AcoI YGGCCR 3 cut(s) 222, 566, 1449
AcsI RAATTY 2 cut(s) 700, 957
AcvI CACGTG 1 cut(s) 748
AcyI GRCGYC 4 cut(s) 69, 458, 521, 807
AdeI CACNNNGTG 1 cut(s) 1269
AfaI GTAC 4 cut(s) 448, 872, 948, 1154
AfiI CCNNNNNNNGG 7 cut(s) 209, 210, 261, 468, 511, 919, 1628
AflII CTTAAG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 3 cut(s) 10, 171, 538
AhdI GACNNNNNGTC 1 cut(s) 857
AjiI CACGTC 1 cut(s) 774
AjnI CCWGG 1 cut(s) 866
AluBI AGCT 5 cut(s) 130, 439, 534, 588, 651
AluI AGCT 5 cut(s) 130, 439, 534, 588, 651
Alw21I GWGCWC 2 cut(s) 106, 1014
Alw26I GTCTC 4 cut(s) 244, 481, 512, 844
AlwI GGATC 1 cut(s) 496
Ama87I CYCGRG 3 cut(s) 244, 810, 1591
AoxI GGCC 5 cut(s) 222, 566, 726, 813, 1449
ApaI GGGCCC 1 cut(s) 817
ApeKI GCWGC 4 cut(s) 611, 628, 651, 1301
ApoI RAATTY 2 cut(s) 700, 957
AspLEI GCGC 1 cut(s) 1006
AspS9I GGNCC 6 cut(s) 141, 727, 795, 813, 814, 1182
AsuC2I CCSGG 8 cut(s) 73, 211, 230, 730, 811, 812, 1369, 1453
AsuHPI GGTGA 5 cut(s) 289, 325, 458, 898, 1240
AsuII TTCGAA 2 cut(s) 258, 704
AvaI CYCGRG 3 cut(s) 244, 810, 1591
AvaII GGWCC 3 cut(s) 141, 795, 1182
BaeGI GKGCMC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 817
BbrPI CACGTG 1 cut(s) 748
BbsI GAAGAC 2 cut(s) 663, 720
Bbv12I GWGCWC 2 cut(s) 106, 1014
BbvCI CCTCAGC 1 cut(s) 779
BbvI GCAGC 4 cut(s) 598, 615, 638, 1288
BccI CCATC 5 cut(s) 117, 166, 377, 431, 1219
BceAI ACGGC 2 cut(s) 616, 1077
BciT130I CCWGG 1 cut(s) 868
BcnI CCSGG 8 cut(s) 73, 211, 230, 730, 811, 812, 1369, 1453
BcoDI GTCTC 4 cut(s) 244, 481, 512, 844
BfaI CTAG 1 cut(s) 1611
BfmI CTRYAG 1 cut(s) 823
BfrI CTTAAG 1 cut(s) 983
BisI GCNGC 8 cut(s) 546, 612, 626, 629, 652, 1088, 1302, 1449
BlsI GCNGC 8 cut(s) 547, 613, 627, 630, 653, 1089, 1303, 1450
Bme1390I CCNGG 9 cut(s) 73, 211, 230, 730, 811, 812, 868, 1369, 1453
Bme18I GGWCC 3 cut(s) 141, 795, 1182
BmeRI GACNNNNNGTC 1 cut(s) 857
BmeT110I CYCGRG 3 cut(s) 244, 810, 1591
BmgBI CACGTC 1 cut(s) 774
BmgT120I GGNCC 6 cut(s) 141, 727, 795, 813, 814, 1182
BmiI GGNNCC 3 cut(s) 815, 836, 1209
BmrFI CCNGG 9 cut(s) 73, 211, 230, 730, 811, 812, 868, 1369, 1453
BmrI ACTGGG 1 cut(s) 1137
BmuI ACTGGG 1 cut(s) 1137
BpiI GAAGAC 2 cut(s) 663, 720
BplI GAGNNNNNCTC 2 cut(s) 1001, 1033
BpmI CTGGAG 1 cut(s) 568
Bpu10I CCTNAGC 1 cut(s) 779
Bpu14I TTCGAA 2 cut(s) 258, 704
BpuEI CTTGAG 2 cut(s) 344, 868
BpuMI CCSGG 8 cut(s) 73, 211, 230, 730, 811, 812, 1369, 1453
BsaAI YACGTR 1 cut(s) 748
BsaBI GATNNNNATC 1 cut(s) 941
BsaHI GRCGYC 4 cut(s) 69, 458, 521, 807
BsaI GGTCTC 1 cut(s) 844
BsaJI CCNNGG 9 cut(s) 72, 243, 429, 453, 505, 810, 830, 999, 1452
BsaWI WCCGGW 4 cut(s) 117, 468, 1019, 1210
BsaXI ACNNNNNCTCC 6 cut(s) 410, 440, 566, 572, 596, 602
Bsc4I CCNNNNNNNGG 7 cut(s) 209, 210, 261, 468, 511, 919, 1628
Bse1I ACTGG 3 cut(s) 99, 383, 1132
Bse8I GATNNNNATC 1 cut(s) 941
BseBI CCWGG 1 cut(s) 868
BseDI CCNNGG 9 cut(s) 72, 243, 429, 453, 505, 810, 830, 999, 1452
BseGI GGATG 5 cut(s) 342, 369, 449, 1051, 1230
BseJI GATNNNNATC 1 cut(s) 941
BseLI CCNNNNNNNGG 7 cut(s) 209, 210, 261, 468, 511, 919, 1628
BseMII CTCAG 5 cut(s) 656, 748, 770, 906, 1391
BseNI ACTGG 3 cut(s) 99, 383, 1132
BseRI GAGGAG 7 cut(s) 232, 530, 776, 827, 1531, 1574, 1592
BseSI GKGCMC 1 cut(s) 817
BseX3I CGGCCG 2 cut(s) 566, 1449
BseXI GCAGC 4 cut(s) 598, 615, 638, 1288
Bsh1236I CGCG 3 cut(s) 431, 545, 664
Bsh1285I CGRYCG 4 cut(s) 552, 569, 1373, 1452
BshFI GGCC 5 cut(s) 224, 568, 728, 815, 1451
BsiEI CGRYCG 4 cut(s) 552, 569, 1373, 1452
BsiHKAI GWGCWC 2 cut(s) 106, 1014
BsiHKCI CYCGRG 3 cut(s) 244, 810, 1591
BsiWI CGTACG 1 cut(s) 946
BslFI GGGAC 1 cut(s) 89
BslI CCNNNNNNNGG 7 cut(s) 209, 210, 261, 468, 511, 919, 1628
BsmAI GTCTC 4 cut(s) 244, 481, 512, 844
BsmBI CGTCTC 1 cut(s) 512
BsmFI GGGAC 1 cut(s) 89
BsnI GGCC 5 cut(s) 224, 568, 728, 815, 1451
Bso31I GGTCTC 1 cut(s) 844
BsoBI CYCGRG 3 cut(s) 244, 810, 1591
Bsp119I TTCGAA 2 cut(s) 258, 704
Bsp120I GGGCCC 1 cut(s) 813
Bsp1286I GDGCHC 3 cut(s) 106, 817, 1014
Bsp143I GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
Bsp19I CCATGG 1 cut(s) 453
BspANI GGCC 5 cut(s) 224, 568, 728, 815, 1451
BspCNI CTCAG 5 cut(s) 655, 747, 771, 905, 1390
BspFNI CGCG 3 cut(s) 431, 545, 664
BspLI GGNNCC 3 cut(s) 815, 836, 1209
BspMAI CTGCAG 1 cut(s) 827
BspPI GGATC 1 cut(s) 496
BspT104I TTCGAA 2 cut(s) 258, 704
BspTI CTTAAG 1 cut(s) 983
BspTNI GGTCTC 1 cut(s) 844
BsrBI CCGCTC 1 cut(s) 1123
BsrI ACTGG 3 cut(s) 99, 383, 1132
BssECI CCNNGG 9 cut(s) 72, 243, 429, 453, 505, 810, 830, 999, 1452
BssMI GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
BssNI GRCGYC 4 cut(s) 69, 458, 521, 807
BssT1I CCWWGG 1 cut(s) 453
Bst2UI CCWGG 1 cut(s) 868
Bst4CI ACNGT 1 cut(s) 951
Bst6I CTCTTC 2 cut(s) 1478, 1551
BstACI GRCGYC 4 cut(s) 69, 458, 521, 807
BstAFI CTTAAG 1 cut(s) 983
BstBAI YACGTR 1 cut(s) 748
BstBI TTCGAA 2 cut(s) 258, 704
BstC8I GCNNGC 2 cut(s) 1014, 1121
BstDEI CTNAG 5 cut(s) 642, 734, 779, 892, 1377
BstDSI CCRYGG 2 cut(s) 429, 453
BstF5I GGATG 5 cut(s) 342, 369, 449, 1051, 1230
BstFNI CGCG 3 cut(s) 431, 545, 664
BstHHI GCGC 1 cut(s) 1006
BstKTI GATC 6 cut(s) 331, 466, 504, 789, 945, 1200
BstMAI GTCTC 4 cut(s) 244, 481, 512, 844
BstMBI GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
BstMCI CGRYCG 4 cut(s) 552, 569, 1373, 1452
BstMWI GCNNNNNNNGC 6 cut(s) 172, 1093, 1102, 1129, 1448, 1454
BstNI CCWGG 1 cut(s) 868
BstSCI CCNGG 9 cut(s) 71, 209, 228, 728, 809, 810, 866, 1367, 1451
BstSFI CTRYAG 1 cut(s) 823
BstSLI GKGCMC 1 cut(s) 817
BstUI CGCG 3 cut(s) 431, 545, 664
BstV1I GCAGC 4 cut(s) 598, 615, 638, 1288
BstV2I GAAGAC 2 cut(s) 663, 720
BstZI CGGCCG 2 cut(s) 566, 1449
BsuRI GGCC 5 cut(s) 224, 568, 728, 815, 1451
BtgI CCRYGG 2 cut(s) 429, 453
BtgZI GCGATG 1 cut(s) 1319
BtrI CACGTC 1 cut(s) 774
BtsCI GGATG 5 cut(s) 342, 369, 449, 1051, 1230
BtsIMutI CAGTG 1 cut(s) 106
Cac8I GCNNGC 2 cut(s) 1014, 1121
CfoI GCGC 1 cut(s) 1006
Cfr13I GGNCC 6 cut(s) 141, 727, 795, 813, 814, 1182
Cfr42I CCGCGG 1 cut(s) 432
Cfr9I CCCGGG 1 cut(s) 810
CseI GACGC 7 cut(s) 77, 259, 447, 529, 617, 730, 815
Csp6I GTAC 4 cut(s) 447, 871, 947, 1153
CviAII CATG 3 cut(s) 454, 1133, 1243
CviQI GTAC 4 cut(s) 447, 871, 947, 1153
DdeI CTNAG 5 cut(s) 642, 734, 779, 892, 1377
DpnI GATC 6 cut(s) 330, 465, 503, 788, 944, 1199
DpnII GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
DraIII CACNNNGTG 1 cut(s) 1269
DrdI GACNNNNNNGTC 1 cut(s) 599
DriI GACNNNNNGTC 1 cut(s) 857
DseDI GACNNNNNNGTC 1 cut(s) 599
EaeI YGGCCR 3 cut(s) 222, 566, 1449
EagI CGGCCG 2 cut(s) 566, 1449
Eam1104I CTCTTC 2 cut(s) 1478, 1551
Eam1105I GACNNNNNGTC 1 cut(s) 857
EarI CTCTTC 2 cut(s) 1478, 1551
EciI GGCGGA 1 cut(s) 832
EclXI CGGCCG 2 cut(s) 566, 1449
Eco130I CCWWGG 1 cut(s) 453
Eco24I GRGCYC 1 cut(s) 817
Eco31I GGTCTC 1 cut(s) 844
Eco47I GGWCC 3 cut(s) 141, 795, 1182
Eco52I CGGCCG 2 cut(s) 566, 1449
Eco72I CACGTG 1 cut(s) 748
Eco88I CYCGRG 3 cut(s) 244, 810, 1591
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 2 cut(s) 700, 957
EcoRII CCWGG 1 cut(s) 866
EcoT14I CCWWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 817
ErhI CCWWGG 1 cut(s) 453
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 3 cut(s) 457, 1136, 1246
FaiI YATR 6 cut(s) 92, 236, 455, 1134, 1244, 1404
FaqI GGGAC 1 cut(s) 89
FatI CATG 3 cut(s) 453, 1132, 1242
FauI CCCGC 3 cut(s) 630, 972, 982
FblI GTMKAC 2 cut(s) 312, 1373
Fnu4HI GCNGC 8 cut(s) 546, 612, 626, 629, 652, 1088, 1302, 1449
FokI GGATG 5 cut(s) 329, 356, 436, 1058, 1237
FriOI GRGCYC 1 cut(s) 817
Fsp4HI GCNGC 8 cut(s) 546, 612, 626, 629, 652, 1088, 1302, 1449
FspBI CTAG 1 cut(s) 1611
GlaI GCGC 1 cut(s) 1005
GluI GCNGC 8 cut(s) 546, 612, 626, 629, 652, 1088, 1302, 1449
GsuI CTGGAG 1 cut(s) 568
HaeIII GGCC 5 cut(s) 224, 568, 728, 815, 1451
HgaI GACGC 7 cut(s) 77, 259, 447, 529, 617, 730, 815
HhaI GCGC 1 cut(s) 1006
Hin1I GRCGYC 4 cut(s) 69, 458, 521, 807
Hin1II CATG 3 cut(s) 457, 1136, 1246
Hin6I GCGC 1 cut(s) 1004
HinP1I GCGC 1 cut(s) 1004
HincII GTYRAC 6 cut(s) 313, 558, 618, 910, 1374, 1654
HindII GTYRAC 6 cut(s) 313, 558, 618, 910, 1374, 1654
HpaI GTTAAC 1 cut(s) 910
HphI GGTGA 5 cut(s) 289, 325, 458, 898, 1240
Hpy188III TCNNGA 3 cut(s) 637, 954, 1379
Hpy99I CGWCG 7 cut(s) 71, 314, 567, 596, 611, 664, 863
HpyAV CCTTC 5 cut(s) 177, 265, 1438, 1504, 1543
HpyCH4III ACNGT 1 cut(s) 951
HpyCH4IV ACGT 4 cut(s) 528, 747, 773, 995
HpyCH4V TGCA 5 cut(s) 152, 282, 825, 1056, 1634
HpyF10VI GCNNNNNNNGC 6 cut(s) 172, 1093, 1102, 1129, 1448, 1454
HpyF3I CTNAG 5 cut(s) 642, 734, 779, 892, 1377
HpySE526I ACGT 4 cut(s) 528, 747, 773, 995
Hsp92I GRCGYC 4 cut(s) 69, 458, 521, 807
Hsp92II CATG 3 cut(s) 457, 1136, 1246
HspAI GCGC 1 cut(s) 1004
KspAI GTTAAC 1 cut(s) 910
KspI CCGCGG 1 cut(s) 432
Kzo9I GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
LmnI GCTCC 3 cut(s) 593, 840, 1009
Lsp1109I GCAGC 4 cut(s) 598, 615, 638, 1288
MaeI CTAG 1 cut(s) 1611
MaeII ACGT 4 cut(s) 528, 747, 773, 995
MaeIII GTNAC 3 cut(s) 248, 572, 1238
MalI GATC 6 cut(s) 330, 465, 503, 788, 944, 1199
MbiI CCGCTC 1 cut(s) 1123
MboI GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
MboII GAAGA 5 cut(s) 663, 725, 796, 1495, 1568
MfeI CAATTG 1 cut(s) 55
MhlI GDGCHC 3 cut(s) 106, 817, 1014
MluCI AATT 6 cut(s) 55, 153, 388, 700, 957, 1273
MmeI TCCRAC 4 cut(s) 615, 1023, 1290, 1506
MseI TTAA 8 cut(s) 83, 218, 909, 939, 984, 1194, 1424, 1431
MspA1I CMGCKG 2 cut(s) 431, 628
MspCI CTTAAG 1 cut(s) 983
MspR9I CCNGG 9 cut(s) 73, 211, 230, 730, 811, 812, 868, 1369, 1453
MunI CAATTG 1 cut(s) 55
MvaI CCWGG 1 cut(s) 868
MvnI CGCG 3 cut(s) 431, 545, 664
MwoI GCNNNNNNNGC 6 cut(s) 172, 1093, 1102, 1129, 1448, 1454
NciI CCSGG 8 cut(s) 73, 211, 230, 730, 811, 812, 1369, 1453
NcoI CCATGG 1 cut(s) 453
NdeII GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
NlaIII CATG 3 cut(s) 457, 1136, 1246
NlaIV GGNNCC 3 cut(s) 815, 836, 1209
NmeAIII GCCGAG 5 cut(s) 594, 672, 811, 1118, 1647
NmuCI GTSAC 3 cut(s) 248, 572, 1238
NspV TTCGAA 2 cut(s) 258, 704
PcsI WCGNNNNNNNCGW 4 cut(s) 549, 644, 665, 714
PfeI GAWTC 2 cut(s) 1313, 1364
Pfl23II CGTACG 1 cut(s) 946
PflFI GACNNNGTC 1 cut(s) 719
PkrI GCNGC 8 cut(s) 547, 613, 627, 630, 653, 1089, 1303, 1450
PmaCI CACGTG 1 cut(s) 748
PmlI CACGTG 1 cut(s) 748
Ppu21I YACGTR 1 cut(s) 748
PpuMI RGGWCCY 1 cut(s) 141
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 1 cut(s) 866
PspCI CACGTG 1 cut(s) 748
PspGI CCWGG 1 cut(s) 866
PspLI CGTACG 1 cut(s) 946
PspN4I GGNNCC 3 cut(s) 815, 836, 1209
PspOMI GGGCCC 1 cut(s) 813
PspPI GGNCC 6 cut(s) 141, 727, 795, 813, 814, 1182
PspPPI RGGWCCY 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 1264, 1296
PstI CTGCAG 1 cut(s) 827
PsyI GACNNNGTC 1 cut(s) 719
RsaI GTAC 4 cut(s) 448, 872, 948, 1154
RsaNI GTAC 4 cut(s) 447, 871, 947, 1153
SacII CCGCGG 1 cut(s) 432
SalI GTCGAC 2 cut(s) 311, 1372
SaqAI TTAA 8 cut(s) 83, 218, 909, 939, 984, 1194, 1424, 1431
SatI GCNGC 8 cut(s) 546, 612, 626, 629, 652, 1088, 1302, 1449
Sau3AI GATC 6 cut(s) 328, 463, 501, 786, 942, 1197
Sau96I GGNCC 6 cut(s) 141, 727, 795, 813, 814, 1182
ScrFI CCNGG 9 cut(s) 73, 211, 230, 730, 811, 812, 868, 1369, 1453
SduI GDGCHC 3 cut(s) 106, 817, 1014
SfcI CTRYAG 1 cut(s) 823
Sfr303I CCGCGG 1 cut(s) 432
SfuI TTCGAA 2 cut(s) 258, 704
SgrBI CCGCGG 1 cut(s) 432
SinI GGWCC 3 cut(s) 141, 795, 1182
SmaI CCCGGG 1 cut(s) 812
SmlI CTYRAG 3 cut(s) 359, 847, 983
SmoI CTYRAG 3 cut(s) 359, 847, 983
SrfI GCCCGGGC 1 cut(s) 812
Sse9I AATT 6 cut(s) 55, 153, 388, 700, 957, 1273
SspI AATATT 1 cut(s) 880
SspMI CTAG 1 cut(s) 1611
StyD4I CCNGG 9 cut(s) 71, 209, 228, 728, 809, 810, 866, 1367, 1451
StyI CCWWGG 1 cut(s) 453
TaaI ACNGT 1 cut(s) 951
TaiI ACGT 4 cut(s) 531, 750, 776, 998
TaqI TCGA 9 cut(s) 106, 258, 312, 638, 687, 704, 759, 1373, 1606
TaqII GACCGA 3 cut(s) 566, 589, 1170
TasI AATT 6 cut(s) 55, 153, 388, 700, 957, 1273
TauI GCSGC 4 cut(s) 548, 628, 1090, 1451
TfiI GAWTC 2 cut(s) 1313, 1364
Tru1I TTAA 8 cut(s) 83, 218, 909, 939, 984, 1194, 1424, 1431
Tru9I TTAA 8 cut(s) 83, 218, 909, 939, 984, 1194, 1424, 1431
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 3 cut(s) 248, 572, 1238
TseI GCWGC 4 cut(s) 611, 628, 651, 1301
Tsp45I GTSAC 3 cut(s) 248, 572, 1238
TspDTI ATGAA 1 cut(s) 184
TspGWI ACGGA 3 cut(s) 328, 434, 808
TspMI CCCGGG 1 cut(s) 810
TspRI CASTG 1 cut(s) 106
Tth111I GACNNNGTC 1 cut(s) 719
Vha464I CTTAAG 1 cut(s) 983
VpaK11BI GGWCC 3 cut(s) 141, 795, 1182
XapI RAATTY 2 cut(s) 700, 957
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmaI CCCGGG 1 cut(s) 810
XmiI GTMKAC 2 cut(s) 312, 1373
XspI CTAG 1 cut(s) 1611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.