pycom111g03090

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0012888
Physical Location & Seq
Reverse (-)
1878561 .. 1880349
1789 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g03090.1

Sequence Viewer

Length: 1725 bp
ATGGGGTTTAGGCATAATCCTTACTTAAGTATGGAGTTTCAGGAAGCTATGTTGAAGCTGATGGTCCACAAATCAAAAGAGAACGAATTGGCTTTCGCCACGCCGGAAAGAGCGGCGGAGATGAGCGGTGCAAGCCCGAGTTCCCGGCGAAAATGGAAGCTTTTTCAGAGGTCGTCGTCGGCAATTCCGTCGAAAACTTCAAAGCCGCAAGCTCCCAGAGAGTTCCTCTGTCCAATCTCCGGCTCTCTGATGGCGGACCCGGTCATCGTCTCCTCCGGCCACACCTTCGAGCGCGCCTGCATCCAAGCCTGCAAGTCCCTCAGCTACACGCCCGCTCTCCCGGACTCTCCGCCGCCCGATTTCTCCTCCGTAATCTCCAACCTCGCTCTCAAATCTGCAATTCTCAGTTGGTGCCGGAAGTCCTCGGTCGATCCTCCCAAGCCCCTCGATGTCGCCTCCGCCGAGAAGCTCGTCCGCGCCTCCATTGCTTCCCGGAACGAAACCAAGCTCCAAAATGGCGTAGTTTTGGAGAATCAGTTGCTGATCAACGGTGTTAAGGATACCCCTACTGTGAATTTCGTCCACGCGGCCACCGATCTGACTCGGCGCCCGACTCACTTCCACTCGAGCTCCGACGAATGGGTCACCGCGGCTCCGCCTCTCCCGTTCTCAACTCAGCCGAGTTGCTACTCATCTCCGTCGTCTTCCTTCTCGGAAAACGAAATCCTAACCGTTAACGGCAACAGTAATCCCTCCCGCTCTGTAGAAGAAGACGAAATCTCGATCAAGCTCAGAAGCTGCCACGTGTTCGAAATCGAGGAGGCCCTGGCTTCGCTGAGGAAGATCACGCGGACCAGAGAGGACGCCCGGGCCCGACTCTGCACCCCGCGGTTGCTTTCCGGCCTCCGCCCTCTGATTATATCCAGGTACACCGCCGTTCAGGTGGATTCCGTCGCAGCGTTGGTCAACCTGTCGCTGGAAAAGTCAAACAAGATTAAGATCGTACGGTCAGGAGTCCTCCCTCCTCTGATCGACGTGCTCAAGACAGGATCCCGTGAGGCGCAGGAACACGCTTCCGGTGCGTTCTTCAGCTTGGCACTTGATGACGACTGCAAGACCGCGATTGGCGCATTGGGCGCGTTGCCGCCTTTGCTGCACTTACTCCGGTCCGAGAGCGAGCGGACTCGGCATGACTCGGCACTCGCATTGTACCACCTCTCACTAGTTCAGAGCAACCGGTCCAAGTTGGTTAAGCTAGGGTCGGTTCCGGTTCTGTTGAGAATGGTAAAGTCGGGCCACATGACGGGTCGGGTATTGCTCATATTGTGTAATTTGAGTTTGTGTGCGAACGGGCGGGCCGCGTTGTTGGAATCGGGTGGGGTGGAGTGTTTGGTGGGTGTGTTAAGAGGAAACGAGTTTGACTCGAAGGCGACTCAAGAGAGTTGTGTGGGCACATTGTATGGGCTGAGTTACGGCGGTTTGAGGTTCAAAGGGTTGGCGAAGACGGCGGGGTTGGTGGAGGCGTTGAGAGAGGTGGAGAAAAAGGGAAGCGAACGGGCGAGGGAGAAAGCGAGAAGAATGTTGGAGATGATGAGAGGGAAAGAGAAGGAAGAAGAAGAAGAAGTGGACTGGGAGGAATTGCTCGACTCGGGGTTTGGGAGTCGAACTCGGTGTCAACCCGGTGGTGGGTTAGGCGGGTTGAGTGCCAACTCATCTGAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04934 map04934
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

575

Amino Acids

62.51

Weight (kDa)

8.85

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 71 - 140 2.7e-11 U-box domain
ARM_PUB PF25598 273 - 536 1.1e-08 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 318 - 501 1.4e-10 ARMC5
Arm PF00514 368 - 407 7.4e-07 Armadillo/beta-catenin-like repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40140
fragaria_vesca FvH4_6g50090
malus_domestica MD09G1039200.v1.1 MD17G1040200.v1.1
prunus_persica Prupe.3G278800_v2.0.a1
pyrus_communis pycom111g03090 pycom17g03600
rosa_chinensis RchiOBHm_Chr2g0170361
rosa_laevigata RLG00000021949
rosa_multiflora Rmu_co8477427.1_g000001 Rmu_sc0011601.1_g000012
rosa_roxburghii Rroxscaffold_2G00081400
rosa_rugosa Rorug02G0548500
rosa_samantha Rh2AG619900 Rh2BG630900 Rh2CG600900 Rh2DG643800
rosa_wichuraiana Rw2G051360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 641
AccB1I GGYRCC 2 cut(s) 411, 606
AccBSI CCGCTC 5 cut(s) 113, 126, 335, 759, 1180
AccII CGCG 9 cut(s) 294, 477, 587, 650, 850, 889, 1121, 1139, 1361
AclWI GGATC 3 cut(s) 425, 1044, 1057
AcoI YGGCCR 2 cut(s) 277, 588
AcsI RAATTY 2 cut(s) 574, 1718
AcuI CTGAAG 1 cut(s) 1072
AcvI CACGTG 1 cut(s) 805
AcyI GRCGYC 2 cut(s) 607, 864
AfaI GTAC 3 cut(s) 929, 1005, 1211
AfiI CCNNNNNNNGG 6 cut(s) 239, 639, 976, 1303, 1685, 1686
AflII CTTAAG 1 cut(s) 25
AflIII ACRYGT 1 cut(s) 804
AgeI ACCGGT 1 cut(s) 1236
AgsI TTSAA 3 cut(s) 55, 201, 1489
AhlI ACTAGT 1 cut(s) 1222
AjiI CACGTC 1 cut(s) 1036
AjnI CCWGG 2 cut(s) 825, 923
Alw21I GWGCWC 2 cut(s) 632, 1041
Alw26I GTCTC 1 cut(s) 274
AlwI GGATC 3 cut(s) 425, 1044, 1057
AlwNI CAGNNNCTG 2 cut(s) 541, 798
Ama87I CYCGRG 4 cut(s) 136, 625, 867, 1648
AoxI GGCC 7 cut(s) 277, 588, 822, 870, 901, 1294, 1356
ApaI GGGCCC 1 cut(s) 874
ApeKI GCWGC 3 cut(s) 798, 956, 1153
ApoI RAATTY 2 cut(s) 574, 1718
ArsI GACNNNNNNTTYG 4 cut(s) 1637, 1657, 1669, 1689
AsiGI ACCGGT 1 cut(s) 1236
AspLEI GCGC 7 cut(s) 294, 296, 479, 609, 1063, 1130, 1139
AsuC2I CCSGG 7 cut(s) 145, 260, 341, 493, 868, 869, 1680
AsuHPI GGTGA 1 cut(s) 637
AsuII TTCGAA 1 cut(s) 810
AvaI CYCGRG 4 cut(s) 136, 625, 867, 1648
AvaII GGWCC 5 cut(s) 64, 256, 852, 1167, 1239
BaeGI GKGCMC 2 cut(s) 874, 1454
BamHI GGATCC 1 cut(s) 1049
BanI GGYRCC 2 cut(s) 411, 606
BanII GRGCYC 2 cut(s) 632, 874
BbrPI CACGTG 1 cut(s) 805
BbsI GAAGAC 3 cut(s) 696, 777, 1508
Bbv12I GWGCWC 2 cut(s) 632, 1041
BbvCI CCTCAGC 2 cut(s) 320, 836
BbvI GCAGC 3 cut(s) 785, 968, 1140
BccI CCATC 2 cut(s) 55, 244
BceAI ACGGC 4 cut(s) 754, 920, 1489, 1521
BcgI CGANNNNNNTGC 2 cut(s) 171, 205
BciT130I CCWGG 2 cut(s) 827, 925
BciVI GTATCC 1 cut(s) 553
BclI TGATCA 1 cut(s) 543
BcnI CCSGG 7 cut(s) 145, 260, 341, 493, 868, 869, 1680
BcoDI GTCTC 1 cut(s) 274
BcuI ACTAGT 1 cut(s) 1222
BfaI CTAG 2 cut(s) 1223, 1256
BfmI CTRYAG 1 cut(s) 762
BfoI RGCGCY 1 cut(s) 610
BfrI CTTAAG 1 cut(s) 25
BfuI GTATCC 1 cut(s) 553
Bme1390I CCNGG 9 cut(s) 145, 260, 341, 493, 827, 868, 869, 925, 1680
Bme18I GGWCC 5 cut(s) 64, 256, 852, 1167, 1239
BmeT110I CYCGRG 4 cut(s) 136, 625, 867, 1648
BmgBI CACGTC 1 cut(s) 1036
BmiI GGNNCC 7 cut(s) 258, 413, 608, 654, 872, 1051, 1266
BmrFI CCNGG 9 cut(s) 145, 260, 341, 493, 827, 868, 869, 925, 1680
BmrI ACTGGG 1 cut(s) 1639
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 1639
BpiI GAAGAC 3 cut(s) 696, 777, 1508
BplI GAGNNNNNCTC 6 cut(s) 210, 242, 1406, 1438, 1651, 1683
Bpu10I CCTNAGC 2 cut(s) 320, 836
Bpu14I TTCGAA 1 cut(s) 810
BpuEI CTTGAG 2 cut(s) 1025, 1419
BpuMI CCSGG 7 cut(s) 145, 260, 341, 493, 868, 869, 1680
BsaAI YACGTR 1 cut(s) 805
BsaBI GATNNNNATC 1 cut(s) 998
BsaHI GRCGYC 2 cut(s) 607, 864
BsaJI CCNNGG 5 cut(s) 423, 648, 825, 867, 887
BsaWI WCCGGW 4 cut(s) 1076, 1164, 1236, 1267
BsaXI ACNNNNNCTCC 6 cut(s) 521, 551, 614, 637, 644, 667
Bsc4I CCNNNNNNNGG 6 cut(s) 239, 639, 976, 1303, 1685, 1686
Bse118I RCCGGY 1 cut(s) 1236
Bse1I ACTGG 1 cut(s) 1634
Bse3DI GCAATG 1 cut(s) 483
Bse8I GATNNNNATC 1 cut(s) 998
BseBI CCWGG 2 cut(s) 827, 925
BseDI CCNNGG 5 cut(s) 423, 648, 825, 867, 887
BseGI GGATG 1 cut(s) 300
BseJI GATNNNNATC 1 cut(s) 998
BseLI CCNNNNNNNGG 6 cut(s) 239, 639, 976, 1303, 1685, 1686
BseMI GCAATG 1 cut(s) 483
BseMII CTCAG 6 cut(s) 334, 418, 689, 805, 827, 1457
BseNI ACTGG 1 cut(s) 1634
BsePI GCGCGC 1 cut(s) 292
BseRI GAGGAG 4 cut(s) 262, 355, 833, 1014
BseSI GKGCMC 2 cut(s) 874, 1454
BseXI GCAGC 3 cut(s) 785, 968, 1140
BsgI GTGCAG 2 cut(s) 865, 1139
Bsh1236I CGCG 9 cut(s) 294, 477, 587, 650, 850, 889, 1121, 1139, 1361
Bsh1285I CGRYCG 1 cut(s) 429
BshFI GGCC 7 cut(s) 279, 590, 824, 872, 903, 1296, 1358
BshNI GGYRCC 2 cut(s) 411, 606
BshTI ACCGGT 1 cut(s) 1236
BsiEI CGRYCG 1 cut(s) 429
BsiHKAI GWGCWC 2 cut(s) 632, 1041
BsiHKCI CYCGRG 4 cut(s) 136, 625, 867, 1648
BsiWI CGTACG 1 cut(s) 1003
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 6 cut(s) 239, 639, 976, 1303, 1685, 1686
BsmAI GTCTC 1 cut(s) 274
BsmBI CGTCTC 1 cut(s) 274
BsmFI GGGAC 1 cut(s) 301
BsnI GGCC 7 cut(s) 279, 590, 824, 872, 903, 1296, 1358
BsoBI CYCGRG 4 cut(s) 136, 625, 867, 1648
Bsp119I TTCGAA 1 cut(s) 810
Bsp120I GGGCCC 1 cut(s) 870
Bsp1286I GDGCHC 4 cut(s) 632, 874, 1041, 1454
Bsp143I GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
BspANI GGCC 7 cut(s) 279, 590, 824, 872, 903, 1296, 1358
BspCNI CTCAG 6 cut(s) 333, 417, 688, 804, 828, 1458
BspFNI CGCG 9 cut(s) 294, 477, 587, 650, 850, 889, 1121, 1139, 1361
BspLI GGNNCC 7 cut(s) 258, 413, 608, 654, 872, 1051, 1266
BspPI GGATC 3 cut(s) 425, 1044, 1057
BspT104I TTCGAA 1 cut(s) 810
BspT107I GGYRCC 2 cut(s) 411, 606
BspTI CTTAAG 1 cut(s) 25
BsrBI CCGCTC 5 cut(s) 113, 126, 335, 759, 1180
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 1236
BsrI ACTGG 1 cut(s) 1634
BssAI RCCGGY 1 cut(s) 1236
BssECI CCNNGG 5 cut(s) 423, 648, 825, 867, 887
BssHII GCGCGC 1 cut(s) 292
BssMI GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
BssNI GRCGYC 2 cut(s) 607, 864
Bst2UI CCWGG 2 cut(s) 827, 925
Bst4CI ACNGT 5 cut(s) 551, 571, 733, 746, 1008
BstACI GRCGYC 2 cut(s) 607, 864
BstAFI CTTAAG 1 cut(s) 25
BstBAI YACGTR 1 cut(s) 805
BstBI TTCGAA 1 cut(s) 810
BstC8I GCNNGC 8 cut(s) 133, 210, 294, 298, 310, 333, 1178, 1356
BstDEI CTNAG 6 cut(s) 320, 404, 675, 791, 836, 1466
BstDSI CCRYGG 2 cut(s) 648, 887
BstEII GGTNACC 1 cut(s) 643
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 9 cut(s) 294, 477, 587, 650, 850, 889, 1121, 1139, 1361
BstH2I RGCGCY 1 cut(s) 610
BstHHI GCGC 7 cut(s) 294, 296, 479, 609, 1063, 1130, 1139
BstKTI GATC 8 cut(s) 433, 546, 598, 786, 846, 1002, 1032, 1052
BstMAI GTCTC 1 cut(s) 274
BstMBI GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
BstMCI CGRYCG 1 cut(s) 429
BstNI CCWGG 2 cut(s) 827, 925
BstPI GGTNACC 1 cut(s) 643
BstSCI CCNGG 9 cut(s) 143, 258, 339, 491, 825, 866, 867, 923, 1678
BstSFI CTRYAG 1 cut(s) 762
BstSLI GKGCMC 2 cut(s) 874, 1454
BstUI CGCG 9 cut(s) 294, 477, 587, 650, 850, 889, 1121, 1139, 1361
BstV1I GCAGC 3 cut(s) 785, 968, 1140
BstV2I GAAGAC 3 cut(s) 696, 777, 1508
BstX2I RGATCY 1 cut(s) 1049
BstYI RGATCY 1 cut(s) 1049
BsuI GTATCC 1 cut(s) 553
BsuRI GGCC 7 cut(s) 279, 590, 824, 872, 903, 1296, 1358
BtgI CCRYGG 2 cut(s) 648, 887
BtrI CACGTC 1 cut(s) 1036
BtsCI GGATG 1 cut(s) 300
Cac8I GCNNGC 8 cut(s) 133, 210, 294, 298, 310, 333, 1178, 1356
CaiI CAGNNNCTG 2 cut(s) 541, 798
CfoI GCGC 7 cut(s) 294, 296, 479, 609, 1063, 1130, 1139
Cfr10I RCCGGY 1 cut(s) 1236
Cfr42I CCGCGG 2 cut(s) 651, 890
Cfr9I CCCGGG 1 cut(s) 867
CpoI CGGWCCG 1 cut(s) 1167
CseI GACGC 1 cut(s) 872
Csp6I GTAC 3 cut(s) 928, 1004, 1210
CspAI ACCGGT 1 cut(s) 1236
CspI CGGWCCG 1 cut(s) 1167
CviAII CATG 2 cut(s) 1190, 1300
CviQI GTAC 3 cut(s) 928, 1004, 1210
DdeI CTNAG 6 cut(s) 320, 404, 675, 791, 836, 1466
DinI GGCGCC 1 cut(s) 608
DpnI GATC 8 cut(s) 432, 545, 597, 785, 845, 1001, 1031, 1051
DpnII GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
DrdI GACNNNNNNGTC 1 cut(s) 641
DseDI GACNNNNNNGTC 1 cut(s) 641
EaeI YGGCCR 2 cut(s) 277, 588
EciI GGCGGA 6 cut(s) 131, 269, 339, 448, 645, 896
Ecl136II GAGCTC 1 cut(s) 630
Eco24I GRGCYC 2 cut(s) 632, 874
Eco47I GGWCC 5 cut(s) 64, 256, 852, 1167, 1239
Eco53kI GAGCTC 1 cut(s) 630
Eco57I CTGAAG 1 cut(s) 1072
Eco72I CACGTG 1 cut(s) 805
Eco88I CYCGRG 4 cut(s) 136, 625, 867, 1648
Eco91I GGTNACC 1 cut(s) 643
EcoICRI GAGCTC 1 cut(s) 630
EcoO109I RGGNCCY 1 cut(s) 823
EcoO65I GGTNACC 1 cut(s) 643
EcoRII CCWGG 2 cut(s) 825, 923
EcoT38I GRGCYC 2 cut(s) 632, 874
EgeI GGCGCC 1 cut(s) 608
EheI GGCGCC 1 cut(s) 608
Esp3I CGTCTC 1 cut(s) 274
FaeI CATG 2 cut(s) 1193, 1303
FaiI YATR 8 cut(s) 15, 32, 50, 920, 1191, 1301, 1322, 1461
FaqI GGGAC 1 cut(s) 301
FatI CATG 2 cut(s) 1189, 1299
FauI CCCGC 6 cut(s) 340, 764, 894, 1347, 1501, 1688
FbaI TGATCA 1 cut(s) 543
FokI GGATG 1 cut(s) 287
FriOI GRGCYC 2 cut(s) 632, 874
FspBI CTAG 2 cut(s) 1223, 1256
GlaI GCGC 7 cut(s) 293, 295, 478, 608, 1062, 1129, 1138
HaeII RGCGCY 1 cut(s) 610
HaeIII GGCC 7 cut(s) 279, 590, 824, 872, 903, 1296, 1358
HgaI GACGC 1 cut(s) 872
HhaI GCGC 7 cut(s) 294, 296, 479, 609, 1063, 1130, 1139
Hin1I GRCGYC 2 cut(s) 607, 864
Hin1II CATG 2 cut(s) 1193, 1303
Hin6I GCGC 7 cut(s) 292, 294, 477, 607, 1061, 1128, 1137
HinP1I GCGC 7 cut(s) 292, 294, 477, 607, 1061, 1128, 1137
HincII GTYRAC 3 cut(s) 736, 967, 1676
HindII GTYRAC 3 cut(s) 736, 967, 1676
HindIII AAGCTT 1 cut(s) 158
HpaI GTTAAC 1 cut(s) 736
HphI GGTGA 1 cut(s) 637
Hpy166II GTNNAC 7 cut(s) 67, 583, 736, 930, 967, 1627, 1676
Hpy188III TCNNGA 5 cut(s) 41, 781, 1011, 1042, 1436
Hpy8I GTNNAC 7 cut(s) 67, 583, 736, 930, 967, 1627, 1676
Hpy99I CGWCG 7 cut(s) 178, 181, 193, 638, 703, 956, 1037
HpyAV CCTTC 4 cut(s) 295, 718, 1420, 1600
HpyCH4III ACNGT 5 cut(s) 551, 571, 733, 746, 1008
HpyCH4IV ACGT 2 cut(s) 804, 1035
HpyCH4V TGCA 7 cut(s) 131, 300, 312, 398, 882, 1113, 1156
HpyF3I CTNAG 6 cut(s) 320, 404, 675, 791, 836, 1466
HpySE526I ACGT 2 cut(s) 804, 1035
Hsp92I GRCGYC 2 cut(s) 607, 864
Hsp92II CATG 2 cut(s) 1193, 1303
HspAI GCGC 7 cut(s) 292, 294, 477, 607, 1061, 1128, 1137
KasI GGCGCC 1 cut(s) 606
Ksp22I TGATCA 1 cut(s) 543
KspAI GTTAAC 1 cut(s) 736
KspI CCGCGG 2 cut(s) 651, 890
Kzo9I GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
LmnI GCTCC 4 cut(s) 217, 513, 635, 658
Lsp1109I GCAGC 3 cut(s) 785, 968, 1140
LweI GCATC 1 cut(s) 309
MaeI CTAG 2 cut(s) 1223, 1256
MaeII ACGT 2 cut(s) 804, 1035
MaeIII GTNAC 2 cut(s) 643, 1469
MalI GATC 8 cut(s) 432, 545, 597, 785, 845, 1001, 1031, 1051
MbiI CCGCTC 5 cut(s) 113, 126, 335, 759, 1180
MboI GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
MflI RGATCY 1 cut(s) 1049
MhlI GDGCHC 4 cut(s) 632, 874, 1041, 1454
MluCI AATT 7 cut(s) 86, 183, 399, 574, 1330, 1637, 1718
Mly113I GGCGCC 1 cut(s) 607
MmeI TCCRAC 4 cut(s) 402, 657, 1347, 1563
MseI TTAA 6 cut(s) 26, 555, 735, 996, 1251, 1403
MspA1I CMGCKG 2 cut(s) 650, 889
MspCI CTTAAG 1 cut(s) 25
MspR9I CCNGG 9 cut(s) 145, 260, 341, 493, 827, 868, 869, 925, 1680
MvaI CCWGG 2 cut(s) 827, 925
MvnI CGCG 9 cut(s) 294, 477, 587, 650, 850, 889, 1121, 1139, 1361
NarI GGCGCC 1 cut(s) 607
NciI CCSGG 7 cut(s) 145, 260, 341, 493, 868, 869, 1680
NdeII GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
NlaIII CATG 2 cut(s) 1193, 1303
NlaIV GGNNCC 7 cut(s) 258, 413, 608, 654, 872, 1051, 1266
NmeAIII GCCGAG 5 cut(s) 487, 583, 705, 1165, 1175
NmuCI GTSAC 1 cut(s) 643
NspV TTCGAA 1 cut(s) 810
PaeR7I CTCGAG 1 cut(s) 625
PauI GCGCGC 1 cut(s) 292
PcsI WCGNNNNNNNCGW 3 cut(s) 185, 459, 591
PfeI GAWTC 3 cut(s) 532, 947, 1370
Pfl23II CGTACG 1 cut(s) 1003
PflFI GACNNNGTC 1 cut(s) 260
PfoI TCCNGGA 2 cut(s) 339, 491
PinAI ACCGGT 1 cut(s) 1236
PluTI GGCGCC 1 cut(s) 610
PmaCI CACGTG 1 cut(s) 805
PmlI CACGTG 1 cut(s) 805
Ppu21I YACGTR 1 cut(s) 805
Psp124BI GAGCTC 1 cut(s) 632
Psp6I CCWGG 2 cut(s) 825, 923
PspCI CACGTG 1 cut(s) 805
PspEI GGTNACC 1 cut(s) 643
PspGI CCWGG 2 cut(s) 825, 923
PspLI CGTACG 1 cut(s) 1003
PspN4I GGNNCC 7 cut(s) 258, 413, 608, 654, 872, 1051, 1266
PspOMI GGGCCC 1 cut(s) 870
PspXI VCTCGAGB 1 cut(s) 625
PstNI CAGNNNCTG 2 cut(s) 541, 798
PsuI RGATCY 1 cut(s) 1049
PsyI GACNNNGTC 1 cut(s) 260
PteI GCGCGC 1 cut(s) 292
RsaI GTAC 3 cut(s) 929, 1005, 1211
RsaNI GTAC 3 cut(s) 928, 1004, 1210
Rsr2I CGGWCCG 1 cut(s) 1167
RsrII CGGWCCG 1 cut(s) 1167
SacI GAGCTC 1 cut(s) 632
SacII CCGCGG 2 cut(s) 651, 890
SaqAI TTAA 6 cut(s) 26, 555, 735, 996, 1251, 1403
Sau3AI GATC 8 cut(s) 430, 543, 595, 783, 843, 999, 1029, 1049
ScrFI CCNGG 9 cut(s) 145, 260, 341, 493, 827, 868, 869, 925, 1680
SduI GDGCHC 4 cut(s) 632, 874, 1041, 1454
SfaNI GCATC 1 cut(s) 309
SfcI CTRYAG 1 cut(s) 762
SfoI GGCGCC 1 cut(s) 608
Sfr274I CTCGAG 1 cut(s) 625
Sfr303I CCGCGG 2 cut(s) 651, 890
SfuI TTCGAA 1 cut(s) 810
SgrBI CCGCGG 2 cut(s) 651, 890
SinI GGWCC 5 cut(s) 64, 256, 852, 1167, 1239
SlaI CTCGAG 1 cut(s) 625
SmaI CCCGGG 1 cut(s) 869
SmlI CTYRAG 4 cut(s) 25, 625, 1040, 1434
SmoI CTYRAG 4 cut(s) 25, 625, 1040, 1434
SpeI ACTAGT 1 cut(s) 1222
SrfI GCCCGGGC 1 cut(s) 869
Sse9I AATT 7 cut(s) 86, 183, 399, 574, 1330, 1637, 1718
SspDI GGCGCC 1 cut(s) 606
SspMI CTAG 2 cut(s) 1223, 1256
SstI GAGCTC 1 cut(s) 632
StyD4I CCNGG 9 cut(s) 143, 258, 339, 491, 825, 866, 867, 923, 1678
TaaI ACNGT 5 cut(s) 551, 571, 733, 746, 1008
TaiI ACGT 2 cut(s) 807, 1038
TaqII GACCGA 1 cut(s) 415
TasI AATT 7 cut(s) 86, 183, 399, 574, 1330, 1637, 1718
TauI GCSGC 7 cut(s) 116, 208, 355, 590, 653, 1147, 1361
TfiI GAWTC 3 cut(s) 532, 947, 1370
Tru1I TTAA 6 cut(s) 26, 555, 735, 996, 1251, 1403
Tru9I TTAA 6 cut(s) 26, 555, 735, 996, 1251, 1403
TseFI GTSAC 1 cut(s) 643
TseI GCWGC 3 cut(s) 798, 956, 1153
Tsp45I GTSAC 1 cut(s) 643
TspGWI ACGGA 4 cut(s) 177, 358, 687, 940
TspMI CCCGGG 1 cut(s) 867
Tth111I GACNNNGTC 1 cut(s) 260
Vha464I CTTAAG 1 cut(s) 25
VpaK11BI GGWCC 5 cut(s) 64, 256, 852, 1167, 1239
XapI RAATTY 2 cut(s) 574, 1718
XhoI CTCGAG 1 cut(s) 625
XmaI CCCGGG 1 cut(s) 867
XspI CTAG 2 cut(s) 1223, 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.