RLG00000021949

RING-type E3 ubiquitin transferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0012888
Physical Location & Seq
Forward (+)
79477551 .. 79479212
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021949

Sequence Viewer

Length: 1662 bp
ATGGAGTTTAAAGACGGTCTGATGAGATTAGTAGTCCACAAATCCAAAGAAACCAATTGCGTATACGACGCCGGAGATAGATTAACAGAGATAATAAGCTCTGCTCGGAGCCCAAGCCGGAGATGGAAGCTGTTTCACAGGTCCTCATCTGCAATTCCATCAAAGCCTCAAATCCCAAGAGAGTTCATTTGCCCCATTTCCGGGTCATTAATGGCCGACCCGGTTATAGTTTCCTCGGGTCACACCTTCGAACGCGTCTGCGTCCAAGTCTGCAAAGCCCTCAACTTCACCCCTAATCTCGTGGACTCGCCCCCACCTGATCTCACCTCCGTCATCCCCAACCTCGCCCTCAAGTCCACCATCCTCAACTGGTGTCAAAATTACTCTATTGCCCCTCCCAAGCCCCCAGACTCCATCTCCGCGGAGAAGCTCGTCCGTACATCCATGGCGTCCGATCACCGGAAAGTCTTGGTTTCCGAGAATGAGTCGCTGATCCGAGGCGTAGAGGAGACGCCTAAAGTGAGCTTCAACCACGCGGCGACCGAGTTGAATCGGCGGCCGAGTCACTTCCACTCCAGCTCCGACGAGTCGGTCAGCCCCGCCGCGCTGACCCCGCCGCTGCCGTTCTCGACTCAGCCGAGCTGCTACTCGTCGCGTTCGTCTTCGAGTTCGGAAATCGAAGCCCCAACGAATTCGAACAAGGAAGACGCAATCTTGGCCAGGCTCAGAAGCGCACACGTGTCGGAAATCGTGGAGGCTCTGACGTCAGTGAGGAAGATCACACGGACCAGAGAGGACGCCCGGGCCCACCTCTGCAGTCCTCGGCTCCTCTCCGCCTTGAGACCACTCGTCGTTTCCAGGTACGCTAATATTCAGGTGAACTCAGTTGCAGCTTTGGTCAACCTTTCGCTGGAAAAGTCAAACAAGATTAAGATCGTACGGTCAGGAATTCTCCCGCCTTTGATTGATGTGCTGAAGGCGGGAACGCCCGAGGCGCAGGAGCACGCCTCCGGTGTGGTCTTTAGTTTGGCGTTGGATGATGATTGCAAGACGGCTATCGGTGTATTGGGGGCTTTGCCGCCTTTGCTTCACTTGCTGAACTCGGAGGGCGAGCGGACTCGGCATGACTCGGCACTTGCTTTGTACCATTTGACATTGGTTCAGAGTAATCGGTCCAAGTTGGTTAAGATCGGGTCGGTTCCGGTTCTTTTGAGGATGGTGAAGTCGGGTCACATGACGGGTCGGGTATTGCTCACATTGTGTAATTTGAGTTCGTGTGCGGACGGGAGGGCTGCGATGTTGGATTCGGGTGGGGTGGAGTGTTTGGTTGGGGTTTTGAGGGGGAATGAGTTTGATTCCCGGTCGACTCAGGAGAGTTGCGTGGCTACATTGTATGGGTTGAGTCGTGGGGGTTTGAGGTTTAAGGGGTTGGCGATGGCGGCCGGGGCGGTGGAGGTCTTGAGGGAAGTGGAGAAGAGTGGTAGTGAGAGAGGGAGGGAGAAGGCGAGGAGGATGTTGGAGATGATGAGAGGGAGGGAGAAGGAGGAAGAGGAGGAAGTGGATTGGGAGGAGTTGCTTGACTCGGGGGTGGGAAGTCGAACAAGGTTTAAGCCCGGTGGTGGTTTATTGGATAGGTCTTGTGTCAACTCGTCCGAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko04934 map04934
Pfam Domains
Protein Families
Arm U-box

Protein Analysis

554

Amino Acids

60.25

Weight (kDa)

8.72

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
U-box PF04564 58 - 127 1.4e-10 U-box domain
ARM_PUB PF25598 239 - 511 7.2e-09 Plant U-box protein ARM repeat region
ARM_ARMC5 PF24768 252 - 411 1e-06 ARMC5
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012888)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G40140
fragaria_vesca FvH4_6g50090
malus_domestica MD09G1039200.v1.1 MD17G1040200.v1.1
prunus_persica Prupe.3G278800_v2.0.a1
pyrus_communis pycom111g03090 pycom17g03600
rosa_chinensis RchiOBHm_Chr2g0170361
rosa_laevigata RLG00000021949
rosa_multiflora Rmu_co8477427.1_g000001 Rmu_sc0011601.1_g000012
rosa_roxburghii Rroxscaffold_2G00081400
rosa_rugosa Rorug02G0548500
rosa_samantha Rh2AG619900 Rh2BG630900 Rh2CG600900 Rh2DG643800
rosa_wichuraiana Rw2G051360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 590
AatII GACGTC 1 cut(s) 767
AccBSI CCGCTC 1 cut(s) 1114
AccI GTMKAC 2 cut(s) 63, 1364
AccII CGCG 5 cut(s) 255, 422, 536, 605, 655
AclWI GGATC 1 cut(s) 487
AcoI YGGCCR 4 cut(s) 213, 557, 717, 1440
AcsI RAATTY 2 cut(s) 691, 948
AcuI CTGAAG 1 cut(s) 995
AcvI CACGTG 1 cut(s) 739
AcyI GRCGYC 5 cut(s) 69, 449, 512, 764, 798
AdeI CACNNNGTG 1 cut(s) 1260
AfaI GTAC 4 cut(s) 439, 863, 939, 1145
AfiI CCNNNNNNNGG 5 cut(s) 200, 201, 459, 910, 1619
AflIII ACRYGT 3 cut(s) 253, 736, 738
AgsI TTSAA 2 cut(s) 529, 550
AhdI GACNNNNNGTC 1 cut(s) 848
AjnI CCWGG 2 cut(s) 719, 857
AluBI AGCT 7 cut(s) 99, 130, 430, 525, 579, 642, 893
AluI AGCT 7 cut(s) 99, 130, 430, 525, 579, 642, 893
Alw21I GWGCWC 1 cut(s) 1005
Alw26I GTCTC 2 cut(s) 503, 835
AlwI GGATC 1 cut(s) 487
Ama87I CYCGRG 4 cut(s) 235, 801, 989, 1582
AoxI GGCC 5 cut(s) 213, 557, 717, 804, 1440
ApaI GGGCCC 1 cut(s) 808
ApeKI GCWGC 4 cut(s) 619, 642, 890, 1292
ApoI RAATTY 2 cut(s) 691, 948
AseI ATTAAT 1 cut(s) 209
AspLEI GCGC 3 cut(s) 607, 734, 997
AspS9I GGNCC 5 cut(s) 141, 786, 804, 805, 1173
AsuC2I CCSGG 7 cut(s) 202, 221, 802, 803, 1360, 1444, 1614
AsuHPI GGTGA 5 cut(s) 280, 316, 449, 889, 1231
AsuII TTCGAA 2 cut(s) 249, 695
AvaI CYCGRG 4 cut(s) 235, 801, 989, 1582
AvaII GGWCC 3 cut(s) 141, 786, 1173
BaeGI GKGCMC 1 cut(s) 808
BalI TGGCCA 1 cut(s) 719
BanII GRGCYC 2 cut(s) 113, 808
BauI CACGAG 1 cut(s) 299
BbrPI CACGTG 1 cut(s) 739
BbsI GAAGAC 2 cut(s) 654, 711
Bbv12I GWGCWC 1 cut(s) 1005
BbvI GCAGC 4 cut(s) 606, 629, 902, 1279
BccI CCATC 6 cut(s) 117, 166, 368, 422, 1210, 1429
BceAI ACGGC 2 cut(s) 607, 1068
BcgI CGANNNNNNTGC 2 cut(s) 723, 757
BciT130I CCWGG 2 cut(s) 721, 859
BcnI CCSGG 7 cut(s) 202, 221, 802, 803, 1360, 1444, 1614
BcoDI GTCTC 2 cut(s) 503, 835
BfmI CTRYAG 1 cut(s) 814
Bme1390I CCNGG 9 cut(s) 202, 221, 721, 802, 803, 859, 1360, 1444, 1614
Bme18I GGWCC 3 cut(s) 141, 786, 1173
BmeRI GACNNNNNGTC 1 cut(s) 848
BmeT110I CYCGRG 4 cut(s) 235, 801, 989, 1582
BmgT120I GGNCC 5 cut(s) 141, 786, 804, 805, 1173
BmiI GGNNCC 4 cut(s) 110, 806, 827, 1200
BmrFI CCNGG 9 cut(s) 202, 221, 721, 802, 803, 859, 1360, 1444, 1614
BpiI GAAGAC 2 cut(s) 654, 711
BplI GAGNNNNNCTC 2 cut(s) 992, 1024
BpmI CTGGAG 1 cut(s) 559
Bpu14I TTCGAA 2 cut(s) 249, 695
BpuEI CTTGAG 3 cut(s) 335, 859, 1480
BpuMI CCSGG 7 cut(s) 202, 221, 802, 803, 1360, 1444, 1614
BsaAI YACGTR 1 cut(s) 739
BsaBI GATNNNNATC 1 cut(s) 932
BsaHI GRCGYC 5 cut(s) 69, 449, 512, 764, 798
BsaI GGTCTC 1 cut(s) 835
BsaJI CCNNGG 8 cut(s) 234, 420, 444, 496, 801, 821, 990, 1443
BsaWI WCCGGW 3 cut(s) 459, 1010, 1201
BsaXI ACNNNNNCTCC 6 cut(s) 401, 431, 557, 563, 587, 593
Bsc4I CCNNNNNNNGG 5 cut(s) 200, 201, 459, 910, 1619
Bse1I ACTGG 1 cut(s) 374
Bse8I GATNNNNATC 1 cut(s) 932
BseBI CCWGG 2 cut(s) 721, 859
BseDI CCNNGG 8 cut(s) 234, 420, 444, 496, 801, 821, 990, 1443
BseGI GGATG 6 cut(s) 333, 360, 440, 1042, 1221, 1518
BseJI GATNNNNATC 1 cut(s) 932
BseLI CCNNNNNNNGG 5 cut(s) 200, 201, 459, 910, 1619
BseMII CTCAG 4 cut(s) 647, 739, 897, 1382
BseNI ACTGG 1 cut(s) 374
BseRI GAGGAG 5 cut(s) 521, 818, 1522, 1565, 1583
BseSI GKGCMC 1 cut(s) 808
BseX3I CGGCCG 2 cut(s) 557, 1440
BseXI GCAGC 4 cut(s) 606, 629, 902, 1279
Bsh1236I CGCG 5 cut(s) 255, 422, 536, 605, 655
Bsh1285I CGRYCG 4 cut(s) 543, 560, 1364, 1443
BshFI GGCC 5 cut(s) 215, 559, 719, 806, 1442
BsiEI CGRYCG 4 cut(s) 543, 560, 1364, 1443
BsiHKAI GWGCWC 1 cut(s) 1005
BsiHKCI CYCGRG 4 cut(s) 235, 801, 989, 1582
BsiWI CGTACG 1 cut(s) 937
BslI CCNNNNNNNGG 5 cut(s) 200, 201, 459, 910, 1619
BsmAI GTCTC 2 cut(s) 503, 835
BsmBI CGTCTC 1 cut(s) 503
BsnI GGCC 5 cut(s) 215, 559, 719, 806, 1442
Bso31I GGTCTC 1 cut(s) 835
BsoBI CYCGRG 4 cut(s) 235, 801, 989, 1582
Bsp119I TTCGAA 2 cut(s) 249, 695
Bsp120I GGGCCC 1 cut(s) 804
Bsp1286I GDGCHC 3 cut(s) 113, 808, 1005
Bsp143I GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
Bsp19I CCATGG 1 cut(s) 444
BspANI GGCC 5 cut(s) 215, 559, 719, 806, 1442
BspCNI CTCAG 4 cut(s) 646, 738, 896, 1381
BspFNI CGCG 5 cut(s) 255, 422, 536, 605, 655
BspLI GGNNCC 4 cut(s) 110, 806, 827, 1200
BspMAI CTGCAG 1 cut(s) 818
BspPI GGATC 1 cut(s) 487
BspT104I TTCGAA 2 cut(s) 249, 695
BspTNI GGTCTC 1 cut(s) 835
BsrBI CCGCTC 1 cut(s) 1114
BsrI ACTGG 1 cut(s) 374
BssECI CCNNGG 8 cut(s) 234, 420, 444, 496, 801, 821, 990, 1443
BssMI GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
BssNAI GTATAC 1 cut(s) 64
BssNI GRCGYC 5 cut(s) 69, 449, 512, 764, 798
BssSI CACGAG 1 cut(s) 299
BssT1I CCWWGG 1 cut(s) 444
Bst1107I GTATAC 1 cut(s) 64
Bst2BI CACGAG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 721, 859
Bst4CI ACNGT 2 cut(s) 17, 942
Bst6I CTCTTC 2 cut(s) 1469, 1542
BstACI GRCGYC 5 cut(s) 69, 449, 512, 764, 798
BstBAI YACGTR 1 cut(s) 739
BstBI TTCGAA 2 cut(s) 249, 695
BstC8I GCNNGC 2 cut(s) 1005, 1112
BstDEI CTNAG 4 cut(s) 633, 725, 883, 1368
BstDSI CCRYGG 2 cut(s) 420, 444
BstF5I GGATG 6 cut(s) 333, 360, 440, 1042, 1221, 1518
BstFNI CGCG 5 cut(s) 255, 422, 536, 605, 655
BstHHI GCGC 3 cut(s) 607, 734, 997
BstKTI GATC 6 cut(s) 322, 457, 495, 780, 936, 1191
BstMAI GTCTC 2 cut(s) 503, 835
BstMBI GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
BstMCI CGRYCG 4 cut(s) 543, 560, 1364, 1443
BstMWI GCNNNNNNNGC 8 cut(s) 613, 716, 994, 1084, 1093, 1120, 1439, 1445
BstNI CCWGG 2 cut(s) 721, 859
BstSCI CCNGG 9 cut(s) 200, 219, 719, 800, 801, 857, 1358, 1442, 1612
BstSFI CTRYAG 1 cut(s) 814
BstSLI GKGCMC 1 cut(s) 808
BstUI CGCG 5 cut(s) 255, 422, 536, 605, 655
BstV1I GCAGC 4 cut(s) 606, 629, 902, 1279
BstV2I GAAGAC 2 cut(s) 654, 711
BstZ17I GTATAC 1 cut(s) 64
BstZI CGGCCG 2 cut(s) 557, 1440
BsuRI GGCC 5 cut(s) 215, 559, 719, 806, 1442
BtgI CCRYGG 2 cut(s) 420, 444
BtgZI GCGATG 2 cut(s) 1310, 1448
BtsCI GGATG 6 cut(s) 333, 360, 440, 1042, 1221, 1518
BtsIMutI CAGTG 1 cut(s) 774
Cac8I GCNNGC 2 cut(s) 1005, 1112
CfoI GCGC 3 cut(s) 607, 734, 997
Cfr13I GGNCC 5 cut(s) 141, 786, 804, 805, 1173
Cfr42I CCGCGG 1 cut(s) 423
Cfr9I CCCGGG 1 cut(s) 801
CseI GACGC 7 cut(s) 77, 244, 250, 438, 520, 716, 806
Csp6I GTAC 4 cut(s) 438, 862, 938, 1144
CviAII CATG 3 cut(s) 445, 1124, 1234
CviQI GTAC 4 cut(s) 438, 862, 938, 1144
DdeI CTNAG 4 cut(s) 633, 725, 883, 1368
DpnI GATC 6 cut(s) 321, 456, 494, 779, 935, 1190
DpnII GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
DraI TTTAAA 1 cut(s) 10
DraIII CACNNNGTG 1 cut(s) 1260
DrdI GACNNNNNNGTC 1 cut(s) 590
DriI GACNNNNNGTC 1 cut(s) 848
DseDI GACNNNNNNGTC 1 cut(s) 590
EaeI YGGCCR 4 cut(s) 213, 557, 717, 1440
EagI CGGCCG 2 cut(s) 557, 1440
Eam1104I CTCTTC 2 cut(s) 1469, 1542
Eam1105I GACNNNNNGTC 1 cut(s) 848
EarI CTCTTC 2 cut(s) 1469, 1542
EciI GGCGGA 1 cut(s) 823
EclXI CGGCCG 2 cut(s) 557, 1440
Eco130I CCWWGG 1 cut(s) 444
Eco24I GRGCYC 2 cut(s) 113, 808
Eco31I GGTCTC 1 cut(s) 835
Eco47I GGWCC 3 cut(s) 141, 786, 1173
Eco52I CGGCCG 2 cut(s) 557, 1440
Eco57I CTGAAG 1 cut(s) 995
Eco72I CACGTG 1 cut(s) 739
Eco88I CYCGRG 4 cut(s) 235, 801, 989, 1582
EcoO109I RGGNCCY 1 cut(s) 141
EcoRI GAATTC 2 cut(s) 691, 948
EcoRII CCWGG 2 cut(s) 719, 857
EcoT14I CCWWGG 1 cut(s) 444
EcoT38I GRGCYC 2 cut(s) 113, 808
ErhI CCWWGG 1 cut(s) 444
Esp3I CGTCTC 1 cut(s) 503
FaeI CATG 3 cut(s) 448, 1127, 1237
FaiI YATR 6 cut(s) 64, 227, 446, 1125, 1235, 1395
FatI CATG 3 cut(s) 444, 1123, 1233
FauI CCCGC 4 cut(s) 607, 621, 963, 973
FblI GTMKAC 2 cut(s) 63, 1364
FokI GGATG 6 cut(s) 320, 347, 427, 1049, 1228, 1525
FriOI GRGCYC 2 cut(s) 113, 808
GlaI GCGC 3 cut(s) 606, 733, 996
GsuI CTGGAG 1 cut(s) 559
HaeIII GGCC 5 cut(s) 215, 559, 719, 806, 1442
HgaI GACGC 7 cut(s) 77, 244, 250, 438, 520, 716, 806
HhaI GCGC 3 cut(s) 607, 734, 997
Hin1I GRCGYC 5 cut(s) 69, 449, 512, 764, 798
Hin1II CATG 3 cut(s) 448, 1127, 1237
Hin6I GCGC 3 cut(s) 605, 732, 995
HinP1I GCGC 3 cut(s) 605, 732, 995
HincII GTYRAC 3 cut(s) 901, 1365, 1645
HindII GTYRAC 3 cut(s) 901, 1365, 1645
HphI GGTGA 5 cut(s) 280, 316, 449, 889, 1231
Hpy166II GTNNAC 8 cut(s) 37, 64, 304, 357, 880, 901, 1365, 1645
Hpy188III TCNNGA 4 cut(s) 628, 945, 1370, 1459
Hpy8I GTNNAC 8 cut(s) 37, 64, 304, 357, 880, 901, 1365, 1645
Hpy99I CGWCG 4 cut(s) 71, 587, 655, 854
HpyAV CCTTC 4 cut(s) 256, 970, 1495, 1534
HpyCH4III ACNGT 2 cut(s) 17, 942
HpyCH4IV ACGT 2 cut(s) 738, 764
HpyCH4V TGCA 5 cut(s) 152, 273, 816, 890, 1047
HpyF10VI GCNNNNNNNGC 8 cut(s) 613, 716, 994, 1084, 1093, 1120, 1439, 1445
HpyF3I CTNAG 4 cut(s) 633, 725, 883, 1368
HpySE526I ACGT 2 cut(s) 738, 764
Hsp92I GRCGYC 5 cut(s) 69, 449, 512, 764, 798
Hsp92II CATG 3 cut(s) 448, 1127, 1237
HspAI GCGC 3 cut(s) 605, 732, 995
KspI CCGCGG 1 cut(s) 423
Kzo9I GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
LmnI GCTCC 4 cut(s) 108, 584, 831, 1000
Lsp1109I GCAGC 4 cut(s) 606, 629, 902, 1279
MaeII ACGT 2 cut(s) 738, 764
MaeIII GTNAC 3 cut(s) 239, 563, 1229
MalI GATC 6 cut(s) 321, 456, 494, 779, 935, 1190
MbiI CCGCTC 1 cut(s) 1114
MboI GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
MboII GAAGA 5 cut(s) 654, 716, 787, 1486, 1559
MfeI CAATTG 1 cut(s) 55
MhlI GDGCHC 3 cut(s) 113, 808, 1005
MlsI TGGCCA 1 cut(s) 719
MluCI AATT 6 cut(s) 55, 153, 379, 691, 948, 1264
MluI ACGCGT 1 cut(s) 253
MluNI TGGCCA 1 cut(s) 719
MmeI TCCRAC 5 cut(s) 606, 723, 1014, 1281, 1497
Mox20I TGGCCA 1 cut(s) 719
MscI TGGCCA 1 cut(s) 719
MseI TTAA 7 cut(s) 9, 83, 209, 930, 1185, 1422, 1608
Msp20I TGGCCA 1 cut(s) 719
MspA1I CMGCKG 2 cut(s) 422, 619
MspR9I CCNGG 9 cut(s) 202, 221, 721, 802, 803, 859, 1360, 1444, 1614
MunI CAATTG 1 cut(s) 55
MvaI CCWGG 2 cut(s) 721, 859
MvnI CGCG 5 cut(s) 255, 422, 536, 605, 655
MwoI GCNNNNNNNGC 8 cut(s) 613, 716, 994, 1084, 1093, 1120, 1439, 1445
NciI CCSGG 7 cut(s) 202, 221, 802, 803, 1360, 1444, 1614
NcoI CCATGG 1 cut(s) 444
NdeII GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
NlaIII CATG 3 cut(s) 448, 1127, 1237
NlaIV GGNNCC 4 cut(s) 110, 806, 827, 1200
NmeAIII GCCGAG 5 cut(s) 585, 663, 802, 1099, 1109
NmuCI GTSAC 3 cut(s) 239, 563, 1229
NspV TTCGAA 2 cut(s) 249, 695
PcsI WCGNNNNNNNCGW 3 cut(s) 540, 635, 656
PfeI GAWTC 3 cut(s) 550, 1304, 1355
Pfl23II CGTACG 1 cut(s) 937
PmaCI CACGTG 1 cut(s) 739
PmlI CACGTG 1 cut(s) 739
Ppu21I YACGTR 1 cut(s) 739
PpuMI RGGWCCY 1 cut(s) 141
PshBI ATTAAT 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 141
Psp6I CCWGG 2 cut(s) 719, 857
PspCI CACGTG 1 cut(s) 739
PspGI CCWGG 2 cut(s) 719, 857
PspLI CGTACG 1 cut(s) 937
PspN4I GGNNCC 4 cut(s) 110, 806, 827, 1200
PspOMI GGGCCC 1 cut(s) 804
PspPI GGNCC 5 cut(s) 141, 786, 804, 805, 1173
PspPPI RGGWCCY 1 cut(s) 141
PsrI GAACNNNNNNTAC 2 cut(s) 1255, 1287
PstI CTGCAG 1 cut(s) 818
RsaI GTAC 4 cut(s) 439, 863, 939, 1145
RsaNI GTAC 4 cut(s) 438, 862, 938, 1144
SacII CCGCGG 1 cut(s) 423
SalI GTCGAC 1 cut(s) 1363
SaqAI TTAA 7 cut(s) 9, 83, 209, 930, 1185, 1422, 1608
Sau3AI GATC 6 cut(s) 319, 454, 492, 777, 933, 1188
Sau96I GGNCC 5 cut(s) 141, 786, 804, 805, 1173
ScrFI CCNGG 9 cut(s) 202, 221, 721, 802, 803, 859, 1360, 1444, 1614
SduI GDGCHC 3 cut(s) 113, 808, 1005
SfcI CTRYAG 1 cut(s) 814
Sfr303I CCGCGG 1 cut(s) 423
SfuI TTCGAA 2 cut(s) 249, 695
SgrBI CCGCGG 1 cut(s) 423
SinI GGWCC 3 cut(s) 141, 786, 1173
SmaI CCCGGG 1 cut(s) 803
SmlI CTYRAG 3 cut(s) 350, 838, 1459
SmoI CTYRAG 3 cut(s) 350, 838, 1459
SrfI GCCCGGGC 1 cut(s) 803
Sse9I AATT 6 cut(s) 55, 153, 379, 691, 948, 1264
SspI AATATT 1 cut(s) 871
StyD4I CCNGG 9 cut(s) 200, 219, 719, 800, 801, 857, 1358, 1442, 1612
StyI CCWWGG 1 cut(s) 444
TaaI ACNGT 2 cut(s) 17, 942
TaiI ACGT 2 cut(s) 741, 767
TaqI TCGA 7 cut(s) 249, 629, 665, 678, 695, 1364, 1597
TaqII GACCGA 3 cut(s) 557, 580, 1161
TasI AATT 6 cut(s) 55, 153, 379, 691, 948, 1264
TauI GCSGC 6 cut(s) 539, 559, 605, 619, 1081, 1442
TfiI GAWTC 3 cut(s) 550, 1304, 1355
Tru1I TTAA 7 cut(s) 9, 83, 209, 930, 1185, 1422, 1608
Tru9I TTAA 7 cut(s) 9, 83, 209, 930, 1185, 1422, 1608
TscAI CASTG 1 cut(s) 774
TseFI GTSAC 3 cut(s) 239, 563, 1229
TseI GCWGC 4 cut(s) 619, 642, 890, 1292
Tsp45I GTSAC 3 cut(s) 239, 563, 1229
TspDTI ATGAA 1 cut(s) 175
TspGWI ACGGA 3 cut(s) 319, 425, 799
TspMI CCCGGG 1 cut(s) 801
TspRI CASTG 1 cut(s) 774
VpaK11BI GGWCC 3 cut(s) 141, 786, 1173
VspI ATTAAT 1 cut(s) 209
XapI RAATTY 2 cut(s) 691, 948
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XmaI CCCGGG 1 cut(s) 801
XmiI GTMKAC 2 cut(s) 63, 1364
ZraI GACGTC 1 cut(s) 765
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.