AT5G41870

Glycoside hydrolase, family 28

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
16758709 .. 16760576
1868 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G41870.1

Sequence Viewer

Length: 1350 bp
ATGAAGATTTCTCAAGCTCCGATCTCTGTTTTCGTACTCTTCTTGCTCTCCACTGTTTTGCCTCACCATCTCTCACTGGGAGCTCCGATTACATGCTCTGGTATAGTTCCAATGAAACACAGAAACGAGATGCTATCAATTTCGGATTTTGGAGCTGTCGGTGACGGCAAGACCTTGAACACCAAAGCATTCAATTCAGCTATTGATCGGATACGAAACTCCAATAACAGTAACGAAGGAACTCTTCTTTATGTGCCTCGTGGTGTGTATTTGACTCAAAGCTTCAATCTTACGAGTCACATGACTTTATACCTCGCCGATGGTGCTGTTATTAAAGCCGTTCAGGATACGGAGAAATGGCCTTTGACCGATCCTTTGCCGTCTTATGGAAGAGGACGGGAGCATCCTGGACGAAGATATATCAGCTTTATTCACGGAGACGGACTCAACGACGTTGTTATTACAGGCAGAAATGGGACGATTGATGGCCAAGGAGAACCTTGGTGGAACATGTGGAGACATGGAACTCTAAAGTTTACCAGACCTGGTCTCATCGAATTCAACAACTCAACAAACATCCTCGTCTCTCATGTTGTTCTTCAGAACTCCCCTTTCTGGACACTTCATCCGGTTTATTGCAGTAATGTTGTTGTTCATCATGTTACTATCCTCGCTCCAACTGATTCGTACAACACCGATGGAATTGATCCAGATTCAAGCTCTAACGTCTGTATAGAAGACTCCTACATATCTACTGGTGACGACCTTGTTGCGGTGAAGAGCGGTTGGGACGAGTATGGCATTGCATACAACCGTCCAAGCCGTGACATCACCATCCGCCGCATCACTGGATCTTCCCCATTTGCTGGAATAGCCATCGGAAGCGAAACTTCTGGCGGAATCCAAAATGTAACAGTTGAAAACATCACTCTCTACAATTCTGGTATCGGCATCCACATCAAGACAAACATTGGCCGAGGAGGAAGCATACAGGGGATAACAATCTCCGGGGTTTACCTAGAAAAAGTCCGGACCGGGATTAAGATCTCTGGCGACACCGGAGATCATCCAGACGATAAATTCAACACATCCGCTCTTCCCATAGTAAGAGGCATAACGATCAAGAACGTATGGGGCATCAAAGTCGAGCGTGCTGGCATGGTTCAGGGATTAAAAGATTCACCTTTCACCAATCTCTGCTTCTCCAATGTTACACTGACCGGAACAAAAAGGTCTCCAATATGGAAATGCTCAGATGTCGTAGGAGCCGCTGACAAGGTCAACCCCACACCTTGCCCTGAACTAAGCGCAACCACACAACAAGGTGGTTCCTGTGAAAACCAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

449

Amino Acids

48.64

Weight (kDa)

6.89

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 46 - 318 4.9e-12 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 142 - 420 1.1e-42 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 866
AccBSI CCGCTC 2 cut(s) 783, 1094
AccIII TCCGGA 1 cut(s) 1029
AciI CCGC 7 cut(s) 773, 783, 838, 841, 897, 1092, 1269
AclWI GGATC 3 cut(s) 365, 701, 859
AcoI YGGCCR 2 cut(s) 487, 973
AcsI RAATTY 2 cut(s) 557, 1079
AcuI CTGAAG 1 cut(s) 584
AfaI GTAC 2 cut(s) 36, 689
AfiI CCNNNNNNNGG 4 cut(s) 386, 615, 772, 866
AflIII ACRYGT 1 cut(s) 510
AgsI TTSAA 7 cut(s) 178, 193, 286, 562, 717, 920, 1084
AjnI CCWGG 2 cut(s) 406, 544
AjuI GAANNNNNNNTTGG 2 cut(s) 1184, 1216
AluBI AGCT 7 cut(s) 17, 83, 155, 200, 282, 426, 720
AluI AGCT 7 cut(s) 17, 83, 155, 200, 282, 426, 720
Alw21I GWGCWC 1 cut(s) 85
Alw26I GTCTC 5 cut(s) 432, 511, 554, 589, 1239
AlwI GGATC 3 cut(s) 365, 701, 859
Aor13HI TCCGGA 1 cut(s) 1029
AoxI GGCC 3 cut(s) 359, 487, 973
ApoI RAATTY 2 cut(s) 557, 1079
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AspLEI GCGC 1 cut(s) 1310
AspS9I GGNCC 1 cut(s) 1032
AsuC2I CCSGG 2 cut(s) 1009, 1036
AsuHPI GGTGA 7 cut(s) 56, 173, 770, 787, 823, 1173, 1180
AvaII GGWCC 1 cut(s) 1032
BalI TGGCCA 1 cut(s) 489
BanII GRGCYC 1 cut(s) 85
BauI CACGAG 1 cut(s) 258
BbsI GAAGAC 1 cut(s) 744
Bbv12I GWGCWC 1 cut(s) 85
BccI CCATC 6 cut(s) 75, 314, 479, 692, 842, 884
BceAI ACGGC 4 cut(s) 181, 323, 364, 807
BcgI CGANNNNNNTGC 4 cut(s) 752, 786, 1126, 1160
BciT130I CCWGG 2 cut(s) 408, 546
BciVI GTATCC 2 cut(s) 204, 340
BcnI CCSGG 2 cut(s) 1009, 1036
BcoDI GTCTC 5 cut(s) 432, 511, 554, 589, 1239
BfaI CTAG 1 cut(s) 1019
BfuI GTATCC 2 cut(s) 204, 340
BglII AGATCT 1 cut(s) 1044
BisI GCNGC 2 cut(s) 841, 1269
BlsI GCNGC 2 cut(s) 842, 1270
Bme1390I CCNGG 4 cut(s) 408, 546, 1009, 1036
Bme18I GGWCC 1 cut(s) 1032
BmgT120I GGNCC 1 cut(s) 1032
BmiI GGNNCC 2 cut(s) 1267, 1330
BmrFI CCNGG 4 cut(s) 408, 546, 1009, 1036
BmrI ACTGGG 1 cut(s) 86
BmsI GCATC 5 cut(s) 120, 412, 852, 960, 1146
BmuI ACTGGG 1 cut(s) 86
BpiI GAAGAC 1 cut(s) 744
BplI GAGNNNNNCTC 2 cut(s) 429, 461
BpuMI CCSGG 2 cut(s) 1009, 1036
BsaBI GATNNNNATC 2 cut(s) 1001, 1043
BsaI GGTCTC 2 cut(s) 554, 1239
BsaJI CCNNGG 4 cut(s) 490, 500, 976, 1008
BsaWI WCCGGW 4 cut(s) 628, 1029, 1058, 1220
Bsc4I CCNNNNNNNGG 4 cut(s) 386, 615, 772, 866
Bse1I ACTGG 3 cut(s) 81, 760, 853
Bse3DI GCAATG 1 cut(s) 801
Bse8I GATNNNNATC 2 cut(s) 1001, 1043
BseAI TCCGGA 1 cut(s) 1029
BseBI CCWGG 2 cut(s) 408, 546
BseDI CCNNGG 4 cut(s) 490, 500, 976, 1008
BseGI GGATG 7 cut(s) 403, 576, 625, 834, 951, 1066, 1088
BseJI GATNNNNATC 2 cut(s) 1001, 1043
BseLI CCNNNNNNNGG 4 cut(s) 386, 615, 772, 866
BseMI GCAATG 1 cut(s) 801
BseMII CTCAG 1 cut(s) 1266
BseNI ACTGG 3 cut(s) 81, 760, 853
BseRI GAGGAG 1 cut(s) 993
BshFI GGCC 3 cut(s) 361, 489, 975
BsiHKAI GWGCWC 1 cut(s) 85
BsiSI CCGG 6 cut(s) 629, 1008, 1030, 1035, 1059, 1221
BslFI GGGAC 2 cut(s) 490, 803
BslI CCNNNNNNNGG 4 cut(s) 386, 615, 772, 866
BsmAI GTCTC 5 cut(s) 432, 511, 554, 589, 1239
BsmBI CGTCTC 2 cut(s) 432, 589
BsmFI GGGAC 2 cut(s) 490, 803
BsmI GAATGC 1 cut(s) 188
BsnI GGCC 3 cut(s) 361, 489, 975
Bso31I GGTCTC 2 cut(s) 554, 1239
Bsp1286I GDGCHC 1 cut(s) 85
Bsp13I TCCGGA 1 cut(s) 1029
Bsp143I GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
BspACI CCGC 7 cut(s) 773, 783, 838, 841, 897, 1092, 1269
BspANI GGCC 3 cut(s) 361, 489, 975
BspCNI CTCAG 1 cut(s) 1265
BspEI TCCGGA 1 cut(s) 1029
BspLI GGNNCC 2 cut(s) 1267, 1330
BspPI GGATC 3 cut(s) 365, 701, 859
BspQI GCTCTTC 2 cut(s) 773, 1101
BspTNI GGTCTC 2 cut(s) 554, 1239
BsrBI CCGCTC 2 cut(s) 783, 1094
BsrDI GCAATG 1 cut(s) 801
BsrI ACTGG 3 cut(s) 81, 760, 853
BssECI CCNNGG 4 cut(s) 490, 500, 976, 1008
BssMI GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
BssSI CACGAG 1 cut(s) 258
BssT1I CCWWGG 2 cut(s) 490, 500
Bst2BI CACGAG 1 cut(s) 258
Bst2UI CCWGG 2 cut(s) 408, 546
Bst4CI ACNGT 4 cut(s) 55, 230, 815, 916
Bst6I CTCTTC 5 cut(s) 44, 249, 385, 773, 1101
BstC8I GCNNGC 2 cut(s) 1152, 1156
BstDEI CTNAG 2 cut(s) 1252, 1304
BstF5I GGATG 7 cut(s) 403, 576, 625, 834, 951, 1066, 1088
BstHHI GCGC 1 cut(s) 1310
BstKTI GATC 8 cut(s) 24, 208, 373, 709, 854, 1047, 1066, 1122
BstMAI GTCTC 5 cut(s) 432, 511, 554, 589, 1239
BstMBI GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
BstMWI GCNNNNNNNGC 2 cut(s) 323, 872
BstNI CCWGG 2 cut(s) 408, 546
BstNSI RCATGY 2 cut(s) 96, 514
BstSCI CCNGG 4 cut(s) 406, 544, 1007, 1034
BstV2I GAAGAC 1 cut(s) 744
BstX2I RGATCY 2 cut(s) 851, 1044
BstYI RGATCY 2 cut(s) 851, 1044
BsuI GTATCC 2 cut(s) 204, 340
BsuRI GGCC 3 cut(s) 361, 489, 975
BtsCI GGATG 7 cut(s) 403, 576, 625, 834, 951, 1066, 1088
BtsIMutI CAGTG 4 cut(s) 51, 74, 846, 1214
Cac8I GCNNGC 2 cut(s) 1152, 1156
CfoI GCGC 1 cut(s) 1310
Cfr13I GGNCC 1 cut(s) 1032
CpoI CGGWCCG 1 cut(s) 1032
CsiI ACCWGGT 1 cut(s) 544
Csp6I GTAC 2 cut(s) 35, 688
CspI CGGWCCG 1 cut(s) 1032
CviAII CATG 7 cut(s) 93, 301, 511, 521, 590, 659, 1159
CviQI GTAC 2 cut(s) 35, 688
DdeI CTNAG 2 cut(s) 1252, 1304
DpnI GATC 8 cut(s) 23, 207, 372, 708, 853, 1046, 1065, 1121
DpnII GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
EaeI YGGCCR 2 cut(s) 487, 973
Eam1104I CTCTTC 5 cut(s) 44, 249, 385, 773, 1101
EarI CTCTTC 5 cut(s) 44, 249, 385, 773, 1101
EciI GGCGGA 2 cut(s) 827, 912
Ecl136II GAGCTC 1 cut(s) 83
Eco130I CCWWGG 2 cut(s) 490, 500
Eco24I GRGCYC 1 cut(s) 85
Eco31I GGTCTC 2 cut(s) 554, 1239
Eco47I GGWCC 1 cut(s) 1032
Eco53kI GAGCTC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 584
EcoICRI GAGCTC 1 cut(s) 83
EcoRI GAATTC 1 cut(s) 557
EcoRII CCWGG 2 cut(s) 406, 544
EcoT14I CCWWGG 2 cut(s) 490, 500
EcoT38I GRGCYC 1 cut(s) 85
ErhI CCWWGG 2 cut(s) 490, 500
Esp3I CGTCTC 2 cut(s) 432, 589
FaeI CATG 7 cut(s) 96, 304, 514, 524, 593, 662, 1162
FalI AAGNNNNNCTT 4 cut(s) 228, 260, 874, 906
FaqI GGGAC 2 cut(s) 490, 803
FatI CATG 7 cut(s) 92, 300, 510, 520, 589, 658, 1158
Fnu4HI GCNGC 2 cut(s) 841, 1269
FokI GGATG 7 cut(s) 390, 563, 612, 821, 938, 1053, 1075
FriOI GRGCYC 1 cut(s) 85
Fsp4HI GCNGC 2 cut(s) 841, 1269
FspBI CTAG 1 cut(s) 1019
GlaI GCGC 1 cut(s) 1309
GluI GCNGC 2 cut(s) 841, 1269
HaeIII GGCC 3 cut(s) 361, 489, 975
HapII CCGG 6 cut(s) 629, 1008, 1030, 1035, 1059, 1221
HhaI GCGC 1 cut(s) 1310
Hin1II CATG 7 cut(s) 96, 304, 514, 524, 593, 662, 1162
Hin6I GCGC 1 cut(s) 1308
HinP1I GCGC 1 cut(s) 1308
HincII GTYRAC 1 cut(s) 1282
HindII GTYRAC 1 cut(s) 1282
HindIII AAGCTT 1 cut(s) 280
HinfI GANTC 8 cut(s) 274, 295, 444, 683, 713, 740, 900, 1178
HpaII CCGG 6 cut(s) 629, 1008, 1030, 1035, 1059, 1221
HphI GGTGA 7 cut(s) 56, 173, 770, 787, 823, 1173, 1180
Hpy166II GTNNAC 3 cut(s) 537, 1015, 1282
Hpy188I TCNGA 7 cut(s) 21, 87, 145, 210, 603, 881, 1255
Hpy188III TCNNGA 7 cut(s) 344, 616, 710, 961, 1030, 1070, 1123
Hpy8I GTNNAC 3 cut(s) 537, 1015, 1282
Hpy99I CGWCG 1 cut(s) 455
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 4 cut(s) 55, 230, 815, 916
HpyCH4IV ACGT 3 cut(s) 453, 726, 1128
HpyCH4V TGCA 2 cut(s) 639, 806
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 872
HpyF3I CTNAG 2 cut(s) 1252, 1304
HpySE526I ACGT 3 cut(s) 453, 726, 1128
Hsp92II CATG 7 cut(s) 96, 304, 514, 524, 593, 662, 1162
HspAI GCGC 1 cut(s) 1308
Kpn2I TCCGGA 1 cut(s) 1029
Kzo9I GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
LguI GCTCTTC 2 cut(s) 773, 1101
LmnI GCTCC 7 cut(s) 22, 80, 88, 152, 400, 679, 1265
LweI GCATC 5 cut(s) 120, 412, 852, 960, 1146
MabI ACCWGGT 1 cut(s) 544
MaeI CTAG 1 cut(s) 1019
MaeII ACGT 3 cut(s) 453, 726, 1128
MaeIII GTNAC 8 cut(s) 161, 230, 296, 661, 758, 824, 910, 1210
MalI GATC 8 cut(s) 23, 207, 372, 708, 853, 1046, 1065, 1121
MbiI CCGCTC 2 cut(s) 783, 1094
MboI GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
MflI RGATCY 2 cut(s) 851, 1044
MhlI GDGCHC 1 cut(s) 85
MlsI TGGCCA 1 cut(s) 489
MluCI AATT 6 cut(s) 138, 193, 557, 702, 937, 1079
MluNI TGGCCA 1 cut(s) 489
MlyI GAGTC 4 cut(s) 268, 304, 438, 734
MmeI TCCRAC 1 cut(s) 701
MnlI CCTC 9 cut(s) 72, 267, 323, 386, 590, 680, 971, 974, 1103
Mox20I TGGCCA 1 cut(s) 489
MroI TCCGGA 1 cut(s) 1029
MscI TGGCCA 1 cut(s) 489
MseI TTAA 3 cut(s) 333, 1041, 1172
Msp20I TGGCCA 1 cut(s) 489
MspA1I CMGCKG 1 cut(s) 1271
MspI CCGG 6 cut(s) 629, 1008, 1030, 1035, 1059, 1221
MspR9I CCNGG 4 cut(s) 408, 546, 1009, 1036
Mva1269I GAATGC 1 cut(s) 188
MvaI CCWGG 2 cut(s) 408, 546
MwoI GCNNNNNNNGC 2 cut(s) 323, 872
NciI CCSGG 2 cut(s) 1009, 1036
NdeII GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
NlaIII CATG 7 cut(s) 96, 304, 514, 524, 593, 662, 1162
NlaIV GGNNCC 2 cut(s) 1267, 1330
NmeAIII GCCGAG 1 cut(s) 1001
NmuCI GTSAC 4 cut(s) 161, 296, 758, 824
NspI RCATGY 2 cut(s) 96, 514
PciI ACATGT 1 cut(s) 510
PciSI GCTCTTC 2 cut(s) 773, 1101
PcsI WCGNNNNNNNCGW 1 cut(s) 447
PctI GAATGC 1 cut(s) 188
PfeI GAWTC 4 cut(s) 683, 713, 900, 1178
PflFI GACNNNGTC 2 cut(s) 546, 1277
PflMI CCANNNNNTGG 1 cut(s) 866
PfoI TCCNGGA 1 cut(s) 406
PkrI GCNGC 2 cut(s) 842, 1270
PleI GAGTC 4 cut(s) 268, 303, 438, 734
PpsI GAGTC 4 cut(s) 268, 303, 438, 734
PscI ACATGT 1 cut(s) 510
Psp124BI GAGCTC 1 cut(s) 85
Psp6I CCWGG 2 cut(s) 406, 544
PspGI CCWGG 2 cut(s) 406, 544
PspN4I GGNNCC 2 cut(s) 1267, 1330
PspPI GGNCC 1 cut(s) 1032
PsuI RGATCY 2 cut(s) 851, 1044
PsyI GACNNNGTC 2 cut(s) 546, 1277
RsaI GTAC 2 cut(s) 36, 689
RsaNI GTAC 2 cut(s) 35, 688
Rsr2I CGGWCCG 1 cut(s) 1032
RsrII CGGWCCG 1 cut(s) 1032
SacI GAGCTC 1 cut(s) 85
SapI GCTCTTC 2 cut(s) 773, 1101
SaqAI TTAA 3 cut(s) 333, 1041, 1172
SatI GCNGC 2 cut(s) 841, 1269
Sau3AI GATC 8 cut(s) 21, 205, 370, 706, 851, 1044, 1063, 1119
Sau96I GGNCC 1 cut(s) 1032
SchI GAGTC 4 cut(s) 268, 304, 438, 734
ScrFI CCNGG 4 cut(s) 408, 546, 1009, 1036
SduI GDGCHC 1 cut(s) 85
SexAI ACCWGGT 1 cut(s) 544
SfaNI GCATC 5 cut(s) 120, 412, 852, 960, 1146
SinI GGWCC 1 cut(s) 1032
SmlI CTYRAG 1 cut(s) 12
SmoI CTYRAG 1 cut(s) 12
Sse9I AATT 6 cut(s) 138, 193, 557, 702, 937, 1079
SsiI CCGC 7 cut(s) 773, 783, 838, 841, 897, 1092, 1269
SspMI CTAG 1 cut(s) 1019
SstI GAGCTC 1 cut(s) 85
StyD4I CCNGG 4 cut(s) 406, 544, 1007, 1034
StyI CCWWGG 2 cut(s) 490, 500
TaaI ACNGT 4 cut(s) 55, 230, 815, 916
TaiI ACGT 3 cut(s) 456, 729, 1131
TaqI TCGA 2 cut(s) 555, 1146
TaqII GACCGA 1 cut(s) 383
TasI AATT 6 cut(s) 138, 193, 557, 702, 937, 1079
TauI GCSGC 2 cut(s) 843, 1271
TfiI GAWTC 4 cut(s) 683, 713, 900, 1178
Tru1I TTAA 3 cut(s) 333, 1041, 1172
Tru9I TTAA 3 cut(s) 333, 1041, 1172
TscAI CASTG 4 cut(s) 58, 81, 853, 1221
TseFI GTSAC 4 cut(s) 161, 296, 758, 824
Tsp45I GTSAC 4 cut(s) 161, 296, 758, 824
TspDTI ATGAA 4 cut(s) 17, 128, 614, 644
TspGWI ACGGA 3 cut(s) 365, 450, 456
TspRI CASTG 4 cut(s) 58, 81, 853, 1221
Tth111I GACNNNGTC 2 cut(s) 546, 1277
Van91I CCANNNNNTGG 1 cut(s) 866
VpaK11BI GGWCC 1 cut(s) 1032
XapI RAATTY 2 cut(s) 557, 1079
XceI RCATGY 2 cut(s) 96, 514
XspI CTAG 1 cut(s) 1019
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.