Rorug07G0020500
ERF Family

Pectate lyase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0004361
Physical Location & Seq
Reverse (-)
1527602 .. 1528801
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0020500.1

Sequence Viewer

Length: 291 bp
ATGTTTATGATTTCCACCACCCCCGGGCTACGTATGCTTCAAGGAAGAAACCAGTTAAAGGTCCTTGTGAAGAAGGTACAAGCTGCTCGTGATGAAATGCAATGGGGTGAAGAGGGCCCTCCTCCATTGCTCGTGAAAATCGCTCCAGATTTGTCTAAAGAAGATCTCGAAGATATTGCTGCAGTGGCCCTTGCCCTTCGCTTGGACGGATTGGTATGTTTCCTTTTAAACAGAAACTTAATGAGTATCCTTGTTTGGCATATATGCTCTATCATGCCTATCAAAATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glyco_hydro_28

Protein Analysis

96

Amino Acids

10.78

Weight (kDa)

7.8

Isoelectric Point (pI)

45.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHO_dh PF01180 7 - 72 4.8e-08 Dihydroorotate dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 78
AfiI CCNNNNNNNGG 3 cut(s) 24, 58, 202
AgsI TTSAA 1 cut(s) 41
AluBI AGCT 1 cut(s) 83
AluI AGCT 1 cut(s) 83
Ama87I CYCGRG 1 cut(s) 23
AoxI GGCC 2 cut(s) 115, 186
ApaI GGGCCC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 83, 179
AspS9I GGNCC 4 cut(s) 61, 115, 116, 187
AsuC2I CCSGG 2 cut(s) 24, 25
AsuHPI GGTGA 1 cut(s) 119
AvaI CYCGRG 1 cut(s) 23
AvaII GGWCC 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 119
BauI CACGAG 2 cut(s) 87, 131
BbvI GCAGC 2 cut(s) 70, 166
BcgI CGANNNNNNTGC 2 cut(s) 158, 192
BciVI GTATCC 1 cut(s) 257
BcnI CCSGG 2 cut(s) 24, 25
BfmI CTRYAG 1 cut(s) 180
BfuI GTATCC 1 cut(s) 257
BglII AGATCT 1 cut(s) 163
BisI GCNGC 2 cut(s) 84, 180
BlsI GCNGC 2 cut(s) 85, 181
Bme1390I CCNGG 2 cut(s) 24, 25
Bme18I GGWCC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 23
BmgT120I GGNCC 4 cut(s) 61, 115, 116, 187
BmiI GGNNCC 1 cut(s) 117
BmrFI CCNGG 2 cut(s) 24, 25
BpmI CTGGAG 1 cut(s) 129
BpuMI CCSGG 2 cut(s) 24, 25
BsaAI YACGTR 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 22, 23
Bsc4I CCNNNNNNNGG 3 cut(s) 24, 58, 202
Bse1I ACTGG 1 cut(s) 52
Bse3DI GCAATG 2 cut(s) 107, 125
BseDI CCNNGG 2 cut(s) 22, 23
BseLI CCNNNNNNNGG 3 cut(s) 24, 58, 202
BseMI GCAATG 2 cut(s) 107, 125
BseNI ACTGG 1 cut(s) 52
BseRI GAGGAG 1 cut(s) 111
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 2 cut(s) 70, 166
BshFI GGCC 2 cut(s) 117, 188
BsiHKCI CYCGRG 1 cut(s) 23
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 24, 58, 202
BsnI GGCC 2 cut(s) 117, 188
BsoBI CYCGRG 1 cut(s) 23
Bsp120I GGGCCC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 2 cut(s) 117, 188
BspLI GGNNCC 1 cut(s) 117
BspMAI CTGCAG 1 cut(s) 184
BsrDI GCAATG 2 cut(s) 107, 125
BsrI ACTGG 1 cut(s) 52
BssECI CCNNGG 2 cut(s) 22, 23
BssMI GATC 1 cut(s) 163
BssSI CACGAG 2 cut(s) 87, 131
Bst2BI CACGAG 2 cut(s) 87, 131
Bst6I CTCTTC 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 32
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 34, 185
BstSCI CCNGG 2 cut(s) 22, 23
BstSFI CTRYAG 1 cut(s) 180
BstSLI GKGCMC 1 cut(s) 119
BstSNI TACGTA 1 cut(s) 32
BstV1I GCAGC 2 cut(s) 70, 166
BstX2I RGATCY 1 cut(s) 163
BstYI RGATCY 1 cut(s) 163
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 117, 188
BtsI GCAGTG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 189
Cfr13I GGNCC 4 cut(s) 61, 115, 116, 187
Cfr9I CCCGGG 1 cut(s) 23
Csp6I GTAC 1 cut(s) 77
CviAII CATG 1 cut(s) 274
CviJI RGCY 4 cut(s) 28, 83, 117, 188
CviKI_1 RGCY 4 cut(s) 28, 83, 117, 188
CviQI GTAC 1 cut(s) 77
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
DraI TTTAAA 1 cut(s) 228
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco105I TACGTA 1 cut(s) 32
Eco24I GRGCYC 1 cut(s) 119
Eco47I GGWCC 1 cut(s) 61
Eco88I CYCGRG 1 cut(s) 23
EcoO109I RGGNCCY 3 cut(s) 61, 115, 116
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 1 cut(s) 277
FaiI YATR 7 cut(s) 8, 35, 217, 261, 263, 265, 275
FatI CATG 1 cut(s) 273
Fnu4HI GCNGC 2 cut(s) 84, 180
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 2 cut(s) 84, 180
GluI GCNGC 2 cut(s) 84, 180
GsuI CTGGAG 1 cut(s) 129
HaeIII GGCC 2 cut(s) 117, 188
HapII CCGG 1 cut(s) 24
Hin1II CATG 1 cut(s) 277
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 119
Hpy188III TCNNGA 4 cut(s) 89, 133, 146, 167
HpyAV CCTTC 2 cut(s) 67, 206
HpyCH4IV ACGT 1 cut(s) 31
HpyCH4V TGCA 2 cut(s) 100, 182
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 185
HpySE526I ACGT 1 cut(s) 31
Hsp92II CATG 1 cut(s) 277
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 148
LpnPI CCDG 3 cut(s) 37, 65, 159
Lsp1109I GCAGC 2 cut(s) 70, 166
MaeII ACGT 1 cut(s) 31
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 5 cut(s) 57, 82, 122, 173, 182
MflI RGATCY 1 cut(s) 163
MhlI GDGCHC 1 cut(s) 119
MnlI CCTC 3 cut(s) 106, 129, 132
MseI TTAA 3 cut(s) 56, 227, 239
MspI CCGG 1 cut(s) 24
MspR9I CCNGG 2 cut(s) 24, 25
MwoI GCNNNNNNNGC 2 cut(s) 34, 185
NciI CCSGG 2 cut(s) 24, 25
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 117
PkrI GCNGC 2 cut(s) 85, 181
Ppu21I YACGTR 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 61
Psp5II RGGWCCY 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 117
PspOMI GGGCCC 1 cut(s) 115
PspPI GGNCC 4 cut(s) 61, 115, 116, 187
PspPPI RGGWCCY 1 cut(s) 61
PstI CTGCAG 1 cut(s) 184
PsuI RGATCY 1 cut(s) 163
RsaI GTAC 1 cut(s) 78
RsaNI GTAC 1 cut(s) 77
SaqAI TTAA 3 cut(s) 56, 227, 239
SatI GCNGC 2 cut(s) 84, 180
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 4 cut(s) 61, 115, 116, 187
ScrFI CCNGG 2 cut(s) 24, 25
SduI GDGCHC 1 cut(s) 119
SetI ASST 4 cut(s) 34, 63, 78, 85
SfcI CTRYAG 1 cut(s) 180
SinI GGWCC 1 cut(s) 61
SmaI CCCGGG 1 cut(s) 25
SnaBI TACGTA 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 22, 23
TaiI ACGT 1 cut(s) 34
TaqI TCGA 1 cut(s) 168
Tru1I TTAA 3 cut(s) 56, 227, 239
Tru9I TTAA 3 cut(s) 56, 227, 239
TscAI CASTG 1 cut(s) 189
TseI GCWGC 2 cut(s) 83, 179
TspDTI ATGAA 1 cut(s) 108
TspGWI ACGGA 1 cut(s) 222
TspMI CCCGGG 1 cut(s) 23
TspRI CASTG 1 cut(s) 189
VpaK11BI GGWCC 1 cut(s) 61
XmaI CCCGGG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.