FvH4_5g04440
ERF Family

Pectate lyase superfamily protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
2598792 .. 2601998
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g04440.t1

Sequence Viewer

Length: 1332 bp
ATGCCACCTCTCTGGTTCTTCCTTTCCATCTTCCTCTCCCTCAGCTACTCCTCCACTGCAACCGAGCCGGTCACGTGCTCCGGGATAGTCCCCATGAAGTACCGTTACGATAAGATTTCGATAAAGGATTTCGGGGGCGTCGGCGACGGCGTCACGGTGAACACCAAGGCGTTTCGTGCGGCGATATATCGGATTCAGCATTTGCATAGGAGAGGCGGCACGCTTCTTTACATACCTCCTGGGGTTTACTTGACAGAGAGCTTCAATCTCACTAGCCACATGACTCTTTACTTGGCTAGAGGTGCTGTGATCAAAGCTACACAGGACACTAAAAATTGGCCTTTAATTGCTCCTTTGCCATCTTATGGAAGGGGGAGAGAGCGCCCTGGAGGCAGATATGTGAGCTTCATCCATGGTGATGGAATTCATGATGTTGTTATCACTGGTGAGAATGGGACAATTGATGGCCAAGGAGATGTGTGGTGGAACATGTGGAGGCAAAGAACTCTTCAGTTCACCAGACCAAATCTCATTGAATTCATCAACTCTAAAAACATTATCATTTCCAATGTGATTTTCCAGAACTCACCATTTTGGAACATTCACCCTGTTTATTCCAGCAATATTGTTGTCCGGTATGTCACAATATTGGCTCCAGCTGACTCTCCCAACACTGATGGAATTGATCCAGATTCAAGCTCTAATGTCTGCATAGAGGACTCATACATATCTACTGGAGATGATCTTGTGGCTGTAAAGAGTGGATGGGATCAGTACGGGATTGCTTATGGTCGCCCTAGTTCCGACATTACCATCCGCCGGATCAGAGGATCATCCCCATTTGCTGGAATTGCAGTAGGAAGTGAAACCTCTGGTGGGGTGGAGAATGTATTCGTGGAACACATAAACCTTCACAATGTGGGAGTTGGCATCCATATAAAGACAAACATCGGCAGGGGAGGCTTCATAAGAAACATAACAGTTTCAAATGTCTACATGGAAAAGGCACGAAAGGGTATAAAGATAGCAGGAGATGTTGGAGACCACCCTGATAACAACTACAACCCAAACGCACTCCCAGTGGTGAAGGGCATCACATTAACAGACATCTGGGGTATACAAGTTCTGCAGGCAGGTCTTATCCAAGGCCTCAAGAACTCCCCTTTCACCGGAATCTGTCTTTCCAACATCAACCTCCACGGCATGCCCGGAACATCAAGAACACCTCCATGGAAGTGCTCGGACATCAGCGGGGCTGCTCATCTGGTGAGCCCTATCCAATGCTCCGAGCTGACCAGTGCCCAACACGCAAGTTCATGCTCCAACTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

444

Amino Acids

48.4

Weight (kDa)

8.62

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pect-lyase_RHGA_epim PF12708 39 - 112 6.7e-07 Rhamnogalacturonase A/epimerase, pectate lyase-like
Glyco_hydro_28 PF00295 135 - 416 2.3e-42 Glycosyl hydrolases family 28
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1124
AccB7I CCANNNNNTGG 2 cut(s) 365, 845
AccI GTMKAC 2 cut(s) 993, 1117
AciI CCGC 4 cut(s) 179, 216, 817, 1251
AclWI GGATC 4 cut(s) 680, 777, 830, 838
AcoI YGGCCR 1 cut(s) 466
AcsI RAATTY 2 cut(s) 423, 536
AcuI CTGAAG 1 cut(s) 494
AcvI CACGTG 1 cut(s) 75
AcyI GRCGYC 2 cut(s) 138, 150
AdeI CACNNNGTG 1 cut(s) 919
AfaI GTAC 2 cut(s) 101, 776
AfiI CCNNNNNNNGG 5 cut(s) 365, 819, 845, 876, 1169
AflIII ACRYGT 1 cut(s) 489
AgsI TTSAA 4 cut(s) 265, 536, 696, 987
AjnI CCWGG 2 cut(s) 238, 385
AjuI GAANNNNNNNTTGG 2 cut(s) 560, 592
AluBI AGCT 7 cut(s) 45, 261, 317, 405, 659, 699, 1291
AluI AGCT 7 cut(s) 45, 261, 317, 405, 659, 699, 1291
Alw21I GWGCWC 2 cut(s) 80, 1241
Alw26I GTCTC 1 cut(s) 1035
AlwI GGATC 4 cut(s) 680, 777, 830, 838
AoxI GGCC 3 cut(s) 338, 466, 1147
ApeKI GCWGC 1 cut(s) 1256
ApoI RAATTY 2 cut(s) 423, 536
Asp700I GAANNNNTTC 1 cut(s) 890
AspLEI GCGC 1 cut(s) 384
AsuC2I CCSGG 2 cut(s) 82, 1209
AsuHPI GGTGA 9 cut(s) 169, 428, 458, 508, 579, 596, 1096, 1159, 1279
BaeGI GKGCMC 1 cut(s) 1303
BalI TGGCCA 1 cut(s) 468
BanII GRGCYC 1 cut(s) 1274
BarI GAAGNNNNNNTAC 2 cut(s) 89, 121
BbrPI CACGTG 1 cut(s) 75
Bbv12I GWGCWC 2 cut(s) 80, 1241
BbvCI CCTCAGC 1 cut(s) 41
BbvI GCAGC 1 cut(s) 1243
BccI CCATC 7 cut(s) 35, 367, 413, 458, 671, 759, 821
BceAI ACGGC 2 cut(s) 163, 1216
BciT130I CCWGG 2 cut(s) 240, 387
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 2 cut(s) 82, 1209
BcoDI GTCTC 1 cut(s) 1035
BfaI CTAG 3 cut(s) 273, 297, 798
BfmI CTRYAG 1 cut(s) 1127
BfoI RGCGCY 1 cut(s) 385
BfuAI ACCTGC 1 cut(s) 1124
BglI GCCNNNNNGGC 1 cut(s) 390
BisI GCNGC 3 cut(s) 180, 217, 1257
BlsI GCNGC 3 cut(s) 181, 218, 1258
Bme1390I CCNGG 4 cut(s) 82, 240, 387, 1209
BmiI GGNNCC 1 cut(s) 654
BmrFI CCNGG 4 cut(s) 82, 240, 387, 1209
BmrI ACTGGG 1 cut(s) 1073
BmsI GCATC 2 cut(s) 939, 1101
BmuI ACTGGG 1 cut(s) 1073
BpmI CTGGAG 3 cut(s) 408, 639, 756
Bpu10I CCTNAGC 1 cut(s) 41
BpuEI CTTGAG 1 cut(s) 1136
BpuMI CCSGG 2 cut(s) 82, 1209
BsaAI YACGTR 1 cut(s) 75
BsaHI GRCGYC 2 cut(s) 138, 150
BsaI GGTCTC 1 cut(s) 1035
BsaJI CCNNGG 8 cut(s) 165, 239, 385, 412, 469, 1144, 1198, 1229
BsaWI WCCGGW 2 cut(s) 633, 1169
Bsc4I CCNNNNNNNGG 5 cut(s) 365, 819, 845, 876, 1169
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 4 cut(s) 448, 739, 1079, 1296
BseBI CCWGG 2 cut(s) 240, 387
BseDI CCNNGG 8 cut(s) 165, 239, 385, 412, 469, 1144, 1198, 1229
BseGI GGATG 5 cut(s) 408, 770, 813, 833, 930
BseLI CCNNNNNNNGG 5 cut(s) 365, 819, 845, 876, 1169
BseMII CTCAG 1 cut(s) 55
BseNI ACTGG 4 cut(s) 448, 739, 1079, 1296
BseRI GAGGAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 1303
BseXI GCAGC 1 cut(s) 1243
BshFI GGCC 3 cut(s) 340, 468, 1149
BsiHKAI GWGCWC 2 cut(s) 80, 1241
BsiSI CCGG 6 cut(s) 68, 81, 634, 820, 1170, 1209
BslFI GGGAC 2 cut(s) 74, 469
BslI CCNNNNNNNGG 5 cut(s) 365, 819, 845, 876, 1169
BsmAI GTCTC 1 cut(s) 1035
BsmFI GGGAC 2 cut(s) 74, 469
BsnI GGCC 3 cut(s) 340, 468, 1149
Bso31I GGTCTC 1 cut(s) 1035
Bsp1286I GDGCHC 4 cut(s) 80, 1241, 1274, 1303
Bsp143I GATC 6 cut(s) 309, 685, 742, 769, 822, 830
Bsp19I CCATGG 2 cut(s) 412, 1229
BspACI CCGC 4 cut(s) 179, 216, 817, 1251
BspANI GGCC 3 cut(s) 340, 468, 1149
BspCNI CTCAG 1 cut(s) 54
BspHI TCATGA 1 cut(s) 427
BspLI GGNNCC 1 cut(s) 654
BspMAI CTGCAG 1 cut(s) 1131
BspMI ACCTGC 1 cut(s) 1124
BspPI GGATC 4 cut(s) 680, 777, 830, 838
BspTNI GGTCTC 1 cut(s) 1035
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 4 cut(s) 448, 739, 1079, 1296
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 8 cut(s) 165, 239, 385, 412, 469, 1144, 1198, 1229
BssMI GATC 6 cut(s) 309, 685, 742, 769, 822, 830
BssNAI GTATAC 1 cut(s) 1118
BssNI GRCGYC 2 cut(s) 138, 150
BssT1I CCWWGG 5 cut(s) 165, 412, 469, 1144, 1229
Bst1107I GTATAC 1 cut(s) 1118
Bst2UI CCWGG 2 cut(s) 240, 387
Bst4CI ACNGT 3 cut(s) 104, 157, 982
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 2 cut(s) 138, 150
BstBAI YACGTR 1 cut(s) 75
BstC8I GCNNGC 3 cut(s) 221, 1131, 1205
BstDEI CTNAG 1 cut(s) 41
BstDSI CCRYGG 3 cut(s) 412, 1198, 1229
BstF5I GGATG 5 cut(s) 408, 770, 813, 833, 930
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 6 cut(s) 312, 688, 745, 772, 825, 833
BstMAI GTCTC 1 cut(s) 1035
BstMBI GATC 6 cut(s) 309, 685, 742, 769, 822, 830
BstMWI GCNNNNNNNGC 6 cut(s) 176, 302, 390, 851, 960, 1307
BstNI CCWGG 2 cut(s) 240, 387
BstNSI RCATGY 2 cut(s) 493, 1207
BstSCI CCNGG 4 cut(s) 80, 238, 385, 1207
BstSFI CTRYAG 1 cut(s) 1127
BstSLI GKGCMC 1 cut(s) 1303
BstV1I GCAGC 1 cut(s) 1243
BstXI CCANNNNNNTGG 2 cut(s) 12, 419
BstZ17I GTATAC 1 cut(s) 1118
BsuRI GGCC 3 cut(s) 340, 468, 1149
BtgI CCRYGG 3 cut(s) 412, 1198, 1229
BtsCI GGATG 5 cut(s) 408, 770, 813, 833, 930
BtsI GCAGTG 1 cut(s) 54
BtsIMutI CAGTG 5 cut(s) 54, 441, 672, 1086, 1303
BveI ACCTGC 1 cut(s) 1124
Cac8I GCNNGC 3 cut(s) 221, 1131, 1205
CciI TCATGA 1 cut(s) 427
CfoI GCGC 1 cut(s) 384
Cfr10I RCCGGY 1 cut(s) 67
CseI GACGC 2 cut(s) 127, 139
Csp6I GTAC 2 cut(s) 100, 775
CviAII CATG 9 cut(s) 94, 280, 413, 428, 490, 997, 1204, 1230, 1317
CviQI GTAC 2 cut(s) 100, 775
DdeI CTNAG 1 cut(s) 41
DpnI GATC 6 cut(s) 311, 687, 744, 771, 824, 832
DpnII GATC 6 cut(s) 309, 685, 742, 769, 822, 830
DraIII CACNNNGTG 1 cut(s) 919
EaeI YGGCCR 1 cut(s) 466
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 1 cut(s) 806
Eco130I CCWWGG 5 cut(s) 165, 412, 469, 1144, 1229
Eco147I AGGCCT 1 cut(s) 1149
Eco24I GRGCYC 1 cut(s) 1274
Eco31I GGTCTC 1 cut(s) 1035
Eco57I CTGAAG 1 cut(s) 494
Eco72I CACGTG 1 cut(s) 75
EcoRI GAATTC 2 cut(s) 423, 536
EcoRII CCWGG 2 cut(s) 238, 385
EcoT14I CCWWGG 5 cut(s) 165, 412, 469, 1144, 1229
EcoT38I GRGCYC 1 cut(s) 1274
ErhI CCWWGG 5 cut(s) 165, 412, 469, 1144, 1229
FaeI CATG 9 cut(s) 97, 283, 416, 431, 493, 1000, 1207, 1233, 1320
FaqI GGGAC 2 cut(s) 74, 469
FatI CATG 9 cut(s) 93, 279, 412, 427, 489, 996, 1203, 1229, 1316
FauI CCCGC 1 cut(s) 1244
FbaI TGATCA 1 cut(s) 309
FblI GTMKAC 2 cut(s) 993, 1117
Fnu4HI GCNGC 3 cut(s) 180, 217, 1257
FokI GGATG 5 cut(s) 395, 777, 800, 820, 917
FriOI GRGCYC 1 cut(s) 1274
Fsp4HI GCNGC 3 cut(s) 180, 217, 1257
FspBI CTAG 3 cut(s) 273, 297, 798
GlaI GCGC 1 cut(s) 383
GluI GCNGC 3 cut(s) 180, 217, 1257
GsuI CTGGAG 3 cut(s) 408, 639, 756
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 3 cut(s) 340, 468, 1149
HapII CCGG 6 cut(s) 68, 81, 634, 820, 1170, 1209
HgaI GACGC 2 cut(s) 127, 139
HhaI GCGC 1 cut(s) 384
Hin1I GRCGYC 2 cut(s) 138, 150
Hin1II CATG 9 cut(s) 97, 283, 416, 431, 493, 1000, 1207, 1233, 1320
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HinfI GANTC 6 cut(s) 193, 283, 662, 692, 719, 1173
HpaII CCGG 6 cut(s) 68, 81, 634, 820, 1170, 1209
HphI GGTGA 9 cut(s) 169, 428, 458, 508, 579, 596, 1096, 1159, 1279
Hpy166II GTNNAC 5 cut(s) 160, 247, 516, 994, 1118
Hpy188I TCNGA 5 cut(s) 192, 805, 827, 1243, 1288
Hpy188III TCNNGA 5 cut(s) 428, 580, 689, 1153, 1218
Hpy8I GTNNAC 5 cut(s) 160, 247, 516, 994, 1118
Hpy99I CGWCG 2 cut(s) 143, 149
HpyAV CCTTC 3 cut(s) 363, 920, 1081
HpyCH4III ACNGT 3 cut(s) 104, 157, 982
HpyCH4IV ACGT 1 cut(s) 74
HpyCH4V TGCA 5 cut(s) 59, 205, 711, 854, 1129
HpyF10VI GCNNNNNNNGC 6 cut(s) 176, 302, 390, 851, 960, 1307
HpyF3I CTNAG 1 cut(s) 41
HpySE526I ACGT 1 cut(s) 74
Hsp92I GRCGYC 2 cut(s) 138, 150
Hsp92II CATG 9 cut(s) 97, 283, 416, 431, 493, 1000, 1207, 1233, 1320
HspAI GCGC 1 cut(s) 382
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 6 cut(s) 309, 685, 742, 769, 822, 830
LmnI GCTCC 5 cut(s) 83, 355, 658, 1289, 1325
Lsp1109I GCAGC 1 cut(s) 1243
LweI GCATC 2 cut(s) 939, 1101
MaeI CTAG 3 cut(s) 273, 297, 798
MaeII ACGT 1 cut(s) 74
MaeIII GTNAC 4 cut(s) 70, 104, 151, 640
MalI GATC 6 cut(s) 311, 687, 744, 771, 824, 832
MboI GATC 6 cut(s) 309, 685, 742, 769, 822, 830
MboII GAAGA 3 cut(s) 10, 22, 500
MfeI CAATTG 1 cut(s) 459
MhlI GDGCHC 4 cut(s) 80, 1241, 1274, 1303
MlsI TGGCCA 1 cut(s) 468
MluCI AATT 7 cut(s) 334, 345, 423, 459, 536, 681, 849
MluNI TGGCCA 1 cut(s) 468
MlyI GAGTC 3 cut(s) 277, 656, 713
MmeI TCCRAC 3 cut(s) 828, 1018, 1209
Mox20I TGGCCA 1 cut(s) 468
MroXI GAANNNNTTC 1 cut(s) 890
MscI TGGCCA 1 cut(s) 468
MseI TTAA 2 cut(s) 344, 1100
MslI CAYNNNNRTG 3 cut(s) 417, 1228, 1234
Msp20I TGGCCA 1 cut(s) 468
MspA1I CMGCKG 2 cut(s) 659, 1251
MspI CCGG 6 cut(s) 68, 81, 634, 820, 1170, 1209
MspR9I CCNGG 4 cut(s) 82, 240, 387, 1209
MunI CAATTG 1 cut(s) 459
MvaI CCWGG 2 cut(s) 240, 387
MwoI GCNNNNNNNGC 6 cut(s) 176, 302, 390, 851, 960, 1307
NciI CCSGG 2 cut(s) 82, 1209
NcoI CCATGG 2 cut(s) 412, 1229
NdeII GATC 6 cut(s) 309, 685, 742, 769, 822, 830
NlaIII CATG 9 cut(s) 97, 283, 416, 431, 493, 1000, 1207, 1233, 1320
NlaIV GGNNCC 1 cut(s) 654
NmuCI GTSAC 3 cut(s) 70, 151, 640
NspI RCATGY 2 cut(s) 493, 1207
PaeI GCATGC 1 cut(s) 1207
PagI TCATGA 1 cut(s) 427
PceI AGGCCT 1 cut(s) 1149
PciI ACATGT 1 cut(s) 489
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PdmI GAANNNNTTC 1 cut(s) 890
PfeI GAWTC 3 cut(s) 193, 692, 1173
PflFI GACNNNGTC 1 cut(s) 149
PflMI CCANNNNNTGG 2 cut(s) 365, 845
PfoI TCCNGGA 1 cut(s) 80
PkrI GCNGC 3 cut(s) 181, 218, 1258
PleI GAGTC 3 cut(s) 277, 656, 713
PmaCI CACGTG 1 cut(s) 75
PmlI CACGTG 1 cut(s) 75
PpsI GAGTC 3 cut(s) 277, 656, 713
Ppu21I YACGTR 1 cut(s) 75
PscI ACATGT 1 cut(s) 489
Psp6I CCWGG 2 cut(s) 238, 385
PspCI CACGTG 1 cut(s) 75
PspGI CCWGG 2 cut(s) 238, 385
PspN4I GGNNCC 1 cut(s) 654
PstI CTGCAG 1 cut(s) 1131
PsyI GACNNNGTC 1 cut(s) 149
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 2 cut(s) 101, 776
RsaNI GTAC 2 cut(s) 100, 775
RseI CAYNNNNRTG 3 cut(s) 417, 1228, 1234
SaqAI TTAA 2 cut(s) 344, 1100
SatI GCNGC 3 cut(s) 180, 217, 1257
Sau3AI GATC 6 cut(s) 309, 685, 742, 769, 822, 830
SchI GAGTC 3 cut(s) 277, 656, 713
ScrFI CCNGG 4 cut(s) 82, 240, 387, 1209
SduI GDGCHC 4 cut(s) 80, 1241, 1274, 1303
SfaNI GCATC 2 cut(s) 939, 1101
SfcI CTRYAG 1 cut(s) 1127
SmiMI CAYNNNNRTG 3 cut(s) 417, 1228, 1234
SmlI CTYRAG 1 cut(s) 1151
SmoI CTYRAG 1 cut(s) 1151
SphI GCATGC 1 cut(s) 1207
Sse9I AATT 7 cut(s) 334, 345, 423, 459, 536, 681, 849
SseBI AGGCCT 1 cut(s) 1149
SsiI CCGC 4 cut(s) 179, 216, 817, 1251
SspI AATATT 2 cut(s) 625, 648
SspMI CTAG 3 cut(s) 273, 297, 798
StuI AGGCCT 1 cut(s) 1149
StyD4I CCNGG 4 cut(s) 80, 238, 385, 1207
StyI CCWWGG 5 cut(s) 165, 412, 469, 1144, 1229
TaaI ACNGT 3 cut(s) 104, 157, 982
TaiI ACGT 1 cut(s) 77
TaqI TCGA 1 cut(s) 119
TasI AATT 7 cut(s) 334, 345, 423, 459, 536, 681, 849
TauI GCSGC 2 cut(s) 182, 219
TfiI GAWTC 3 cut(s) 193, 692, 1173
Tru1I TTAA 2 cut(s) 344, 1100
Tru9I TTAA 2 cut(s) 344, 1100
TscAI CASTG 5 cut(s) 61, 448, 679, 1086, 1303
TseFI GTSAC 3 cut(s) 70, 151, 640
TseI GCWGC 1 cut(s) 1256
Tsp45I GTSAC 3 cut(s) 70, 151, 640
TspDTI ATGAA 6 cut(s) 110, 397, 416, 529, 955, 1305
TspRI CASTG 5 cut(s) 61, 448, 679, 1086, 1303
Tth111I GACNNNGTC 1 cut(s) 149
Van91I CCANNNNNTGG 2 cut(s) 365, 845
XapI RAATTY 2 cut(s) 423, 536
XceI RCATGY 2 cut(s) 493, 1207
XmiI GTMKAC 2 cut(s) 993, 1117
XmnI GAANNNNTTC 1 cut(s) 890
XspI CTAG 3 cut(s) 273, 297, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.