Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006438

Physical Location & Seq

Genomic Coordinates Forward (+)

16793614 .. 16795006

Gene Structure 1393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G41980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGAGATCTCCGGCGAAGAAGATAAAGAAGAAGCTGTTACTCTCCCCAAAGAAGTAAGCAAAATCTCAATCTCAGATGGTAACAAGTTCGTATACCAAATCCTCAATGGTCCTAACGAACAATGTTTTGAGAATTTCCGTATGGATAAGCCTGTCTTCTATAAACTCTGTGATCTCCTTCAGACCAGAGGCTTATTGCGTCACACTAATCGAATCAAGATTGAGGCACAGTTAGCAATCTTTTTGTTCATCATTGGTCATAATCTTCGTACTCGAGCTGTTCAAGAACTCTTCTGTTACTCTGGTGAAACCATTAGCCGCCATTTCAACAATGTTTTGAATGCAGTTATTGCAATCTCTAAGGATTTTTTTCAACCCAATTCAAATTCTGATACTTTGGAGAATGATGATCCGTATTTCAAAGACTGTGTTGGTGTTGTTGATAGCTTCCACATTCCGGTTATGGTTGGGGTCGATGAGCAAGGTCCGTTTCGAAACGGCAATGGACTGCTTACTCAGAATGTTCTTGCAGCTTCGTCGTTCGATCTTAGATTCAATTATGTGTTAGCTGGTTGGGAAGGTTCAGCTTCTGATCAACAAGTTCTCAATGCAGCTTTGACTCGGCGTAACAAGTTACAAGTCCCTCAAGGAAAATACTACATTGTTGACAATAAGTATCCGAATCTTCCTGGCTTTATCGCGCCGTATCACGGTGTTTCAACCAATTCAAGAGAAGAAGCAAAGGAAATGTTCAATGAGCGACACAAGTTGTTGCATCGAGCTATCCACCGGACTTTTGGGGCTTTGAAAGAACGGTTTCCGATTCTACTATCAGCTCCTCCGTATCCTCTACAAACGCAAGTGAAACTGGTGATTGCGGCTTGTGCATTGCACAACTATGTCCGCTTGGAGAAACCAGATGATTTAGTGTTTAGGATGTTTGAAGAAGAGACTCTGGCGGAAGCAGGAGAAGATAGAGAAGTGGCTTTAGAAGAGGAACAAGTAGAGATAGTGGGGCAGGAACATGGGTTTAGACCAGAAGAAGTTGAAGATAGTTTAAGGTTAAGAGATGAGATTGCATCTGAGCTTTGGAACCATTATGTCCAAAATATGTCAACCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

374

Amino Acids

42.8

Weight (kDa)

5.21

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	23 - 117	1.1e-34	Domain of unknown function (DUF8040)
DDE_Tnp_4	PF13359	147 - 299	1.4e-16	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41980
fragaria_vesca	FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911
malus_domestica	MD00G1159500.v1.1 MD06G1227900.v1.1 MD14G1237100.v1.1
prunus_persica	Prupe.5G234400_v2.0.a1 Prupe.7G000100_v2.0.a1
pyrus_communis	pycom06g20420 pycom06g20430 pycom12g00010 pycom14g19810
rosa_chinensis	RchiOBHm_Chr1g0313091 RchiOBHm_Chr6g0248041
rosa_multiflora	Rmu_sc0001606.1_g000006 Rmu_sc0030940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332540
rosa_samantha	Rh1CG001900 Rh1CG005100 Rh6BG040400
rosa_wichuraiana	Rw0G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	93
AccII	CGCG	1 cut(s)	701
AciI	CCGC	4 cut(s)	319, 878, 904, 959
AclWI	GGATC	1 cut(s)	404
AcsI	RAATTY	2 cut(s)	133, 385
AcuI	CTGAAG	1 cut(s)	164
AfaI	GTAC	1 cut(s)	271
AfiI	CCNNNNNNNGG	2 cut(s)	457, 710
AjnI	CCWGG	1 cut(s)	688
Alw26I	GTCTC	1 cut(s)	944
AlwI	GGATC	1 cut(s)	404
AlwNI	CAGNNNCTG	1 cut(s)	590
Ama87I	CYCGRG	1 cut(s)	273
ApeKI	GCWGC	2 cut(s)	530, 611
ApoI	RAATTY	2 cut(s)	133, 385
Asp700I	GAANNNNTTC	1 cut(s)	816
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	2 cut(s)	110, 485
AsuHPI	GGTGA	2 cut(s)	317, 883
AsuII	TTCGAA	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	273
AvaII	GGWCC	2 cut(s)	110, 485
BbsI	GAAGAC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	542, 623
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	2 cut(s)	514, 688
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BciT130I	CCWGG	1 cut(s)	690
BciVI	GTATCC	2 cut(s)	687, 855
BclI	TGATCA	1 cut(s)	592
BcoDI	GTCTC	1 cut(s)	944
BfuI	GTATCC	2 cut(s)	687, 855
BglII	AGATCT	1 cut(s)	6
BisI	GCNGC	4 cut(s)	319, 531, 612, 879
BlsI	GCNGC	4 cut(s)	320, 532, 613, 880
Bme1390I	CCNGG	1 cut(s)	690
Bme18I	GGWCC	2 cut(s)	110, 485
BmeT110I	CYCGRG	1 cut(s)	273
BmgT120I	GGNCC	2 cut(s)	110, 485
BmiI	GGNNCC	1 cut(s)	1094
BmrFI	CCNGG	1 cut(s)	690
BmsI	GCATC	2 cut(s)	784, 1088
BpiI	GAAGAC	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	493
BpuEI	CTTGAG	1 cut(s)	630
BsaWI	WCCGGW	2 cut(s)	457, 789
Bsc4I	CCNNNNNNNGG	2 cut(s)	457, 710
Bse1I	ACTGG	1 cut(s)	873
Bse3DI	GCAATG	2 cut(s)	508, 887
BseBI	CCWGG	1 cut(s)	690
BseGI	GGATG	1 cut(s)	942
BseLI	CCNNNNNNNGG	2 cut(s)	457, 710
BseMI	GCAATG	2 cut(s)	508, 887
BseMII	CTCAG	3 cut(s)	87, 530, 1074
BseNI	ACTGG	1 cut(s)	873
BseRI	GAGGAG	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	542, 623
Bsh1236I	CGCG	1 cut(s)	701
BsiHKCI	CYCGRG	1 cut(s)	273
BsiSI	CCGG	3 cut(s)	12, 458, 790
BslFI	GGGAC	1 cut(s)	626
BslI	CCNNNNNNNGG	2 cut(s)	457, 710
BsmAI	GTCTC	1 cut(s)	944
BsmFI	GGGAC	1 cut(s)	626
BsmI	GAATGC	1 cut(s)	346
BsoBI	CYCGRG	1 cut(s)	273
Bsp119I	TTCGAA	1 cut(s)	493
Bsp143I	GATC	5 cut(s)	6, 172, 409, 544, 592
BspACI	CCGC	4 cut(s)	319, 878, 904, 959
BspCNI	CTCAG	3 cut(s)	86, 529, 1075
BspFNI	CGCG	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	1094
BspPI	GGATC	1 cut(s)	404
BspT104I	TTCGAA	1 cut(s)	493
BsrDI	GCAATG	2 cut(s)	508, 887
BsrI	ACTGG	1 cut(s)	873
BssMI	GATC	5 cut(s)	6, 172, 409, 544, 592
BssNAI	GTATAC	1 cut(s)	94
Bst1107I	GTATAC	1 cut(s)	94
Bst2UI	CCWGG	1 cut(s)	690
Bst4CI	ACNGT	4 cut(s)	231, 428, 713, 816
Bst6I	CTCTTC	3 cut(s)	296, 942, 987
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstBI	TTCGAA	1 cut(s)	493
BstDEI	CTNAG	5 cut(s)	73, 360, 516, 548, 1083
BstF5I	GGATG	1 cut(s)	942
BstFNI	CGCG	1 cut(s)	701
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	5 cut(s)	9, 175, 412, 547, 595
BstMAI	GTCTC	1 cut(s)	944
BstMBI	GATC	5 cut(s)	6, 172, 409, 544, 592
BstMWI	GCNNNNNNNGC	3 cut(s)	233, 350, 884
BstNI	CCWGG	1 cut(s)	690
BstSCI	CCNGG	1 cut(s)	688
BstUI	CGCG	1 cut(s)	701
BstV1I	GCAGC	2 cut(s)	542, 623
BstV2I	GAAGAC	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	6
BstYI	RGATCY	1 cut(s)	6
BstZ17I	GTATAC	1 cut(s)	94
BsuI	GTATCC	2 cut(s)	687, 855
BtsCI	GGATG	1 cut(s)	942
CaiI	CAGNNNCTG	1 cut(s)	590
CfoI	GCGC	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	110, 485
CseI	GACGC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	270
CviAII	CATG	1 cut(s)	1025
CviQI	GTAC	1 cut(s)	270
DdeI	CTNAG	5 cut(s)	73, 360, 516, 548, 1083
DpnI	GATC	5 cut(s)	8, 174, 411, 546, 594
DpnII	GATC	5 cut(s)	6, 172, 409, 544, 592
Eam1104I	CTCTTC	3 cut(s)	296, 942, 987
EarI	CTCTTC	3 cut(s)	296, 942, 987
EciI	GGCGGA	1 cut(s)	974
Eco47I	GGWCC	2 cut(s)	110, 485
Eco57I	CTGAAG	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	273
EcoRII	CCWGG	1 cut(s)	688
FaeI	CATG	1 cut(s)	1028
FalI	AAGNNNNNCTT	2 cut(s)	140, 172
FaqI	GGGAC	1 cut(s)	626
FatI	CATG	1 cut(s)	1024
FbaI	TGATCA	1 cut(s)	592
FblI	GTMKAC	1 cut(s)	93
Fnu4HI	GCNGC	4 cut(s)	319, 531, 612, 879
FokI	GGATG	1 cut(s)	949
Fsp4HI	GCNGC	4 cut(s)	319, 531, 612, 879
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	4 cut(s)	319, 531, 612, 879
HapII	CCGG	3 cut(s)	12, 458, 790
HgaI	GACGC	1 cut(s)	188
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	1 cut(s)	1028
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HincII	GTYRAC	2 cut(s)	667, 1116
HindII	GTYRAC	2 cut(s)	667, 1116
HinfI	GANTC	6 cut(s)	213, 552, 619, 682, 823, 952
HpaII	CCGG	3 cut(s)	12, 458, 790
HphI	GGTGA	2 cut(s)	317, 883
Hpy166II	GTNNAC	3 cut(s)	94, 667, 1116
Hpy188I	TCNGA	8 cut(s)	76, 183, 391, 519, 592, 681, 822, 1084
Hpy188III	TCNNGA	3 cut(s)	217, 284, 729
Hpy8I	GTNNAC	3 cut(s)	94, 667, 1116
Hpy99I	CGWCG	1 cut(s)	541
HpyAV	CCTTC	2 cut(s)	188, 572
HpyCH4III	ACNGT	4 cut(s)	231, 428, 713, 816
HpyCH4V	TGCA	8 cut(s)	344, 353, 530, 611, 775, 887, 892, 1079
HpyF10VI	GCNNNNNNNGC	3 cut(s)	233, 350, 884
HpyF3I	CTNAG	5 cut(s)	73, 360, 516, 548, 1083
Hsp92II	CATG	1 cut(s)	1028
HspAI	GCGC	1 cut(s)	701
Ksp22I	TGATCA	1 cut(s)	592
Kzo9I	GATC	5 cut(s)	6, 172, 409, 544, 592
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	2 cut(s)	542, 623
LweI	GCATC	2 cut(s)	784, 1088
MaeIII	GTNAC	6 cut(s)	37, 80, 200, 296, 626, 633
MalI	GATC	5 cut(s)	8, 174, 411, 546, 594
MboI	GATC	5 cut(s)	6, 172, 409, 544, 592
MflI	RGATCY	1 cut(s)	6
MluCI	AATT	5 cut(s)	133, 379, 385, 556, 724
MlyI	GAGTC	2 cut(s)	613, 946
MnlI	CCTC	7 cut(s)	113, 182, 217, 654, 849, 858, 988
MroXI	GAANNNNTTC	1 cut(s)	816
MseI	TTAA	2 cut(s)	1058, 1064
MslI	CAYNNNNRTG	1 cut(s)	897
MspI	CCGG	3 cut(s)	12, 458, 790
MspR9I	CCNGG	1 cut(s)	690
Mva1269I	GAATGC	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	690
MvnI	CGCG	1 cut(s)	701
MwoI	GCNNNNNNNGC	3 cut(s)	233, 350, 884
NdeII	GATC	5 cut(s)	6, 172, 409, 544, 592
NlaIII	CATG	1 cut(s)	1028
NlaIV	GGNNCC	1 cut(s)	1094
NmeAIII	GCCGAG	1 cut(s)	601
NmuCI	GTSAC	1 cut(s)	200
NspV	TTCGAA	1 cut(s)	493
PaeR7I	CTCGAG	1 cut(s)	273
PctI	GAATGC	1 cut(s)	346
PdmI	GAANNNNTTC	1 cut(s)	816
PfeI	GAWTC	4 cut(s)	213, 552, 682, 823
PkrI	GCNGC	4 cut(s)	320, 532, 613, 880
PleI	GAGTC	2 cut(s)	613, 946
PpsI	GAGTC	2 cut(s)	613, 946
Psp6I	CCWGG	1 cut(s)	688
PspGI	CCWGG	1 cut(s)	688
PspN4I	GGNNCC	1 cut(s)	1094
PspPI	GGNCC	2 cut(s)	110, 485
PspXI	VCTCGAGB	1 cut(s)	273
PstNI	CAGNNNCTG	1 cut(s)	590
PsuI	RGATCY	1 cut(s)	6
RsaI	GTAC	1 cut(s)	271
RsaNI	GTAC	1 cut(s)	270
RseI	CAYNNNNRTG	1 cut(s)	897
SaqAI	TTAA	2 cut(s)	1058, 1064
SatI	GCNGC	4 cut(s)	319, 531, 612, 879
Sau3AI	GATC	5 cut(s)	6, 172, 409, 544, 592
Sau96I	GGNCC	2 cut(s)	110, 485
SchI	GAGTC	2 cut(s)	613, 946
ScrFI	CCNGG	1 cut(s)	690
SfaNI	GCATC	2 cut(s)	784, 1088
Sfr274I	CTCGAG	1 cut(s)	273
SfuI	TTCGAA	1 cut(s)	493
SinI	GGWCC	2 cut(s)	110, 485
SlaI	CTCGAG	1 cut(s)	273
SmiMI	CAYNNNNRTG	1 cut(s)	897
SmlI	CTYRAG	2 cut(s)	273, 645
SmoI	CTYRAG	2 cut(s)	273, 645
Sse9I	AATT	5 cut(s)	133, 379, 385, 556, 724
SsiI	CCGC	4 cut(s)	319, 878, 904, 959
StyD4I	CCNGG	1 cut(s)	688
TaaI	ACNGT	4 cut(s)	231, 428, 713, 816
TaqI	TCGA	6 cut(s)	211, 274, 474, 493, 543, 778
TasI	AATT	5 cut(s)	133, 379, 385, 556, 724
TauI	GCSGC	2 cut(s)	321, 881
TfiI	GAWTC	4 cut(s)	213, 552, 682, 823
Tru1I	TTAA	2 cut(s)	1058, 1064
Tru9I	TTAA	2 cut(s)	1058, 1064
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	2 cut(s)	530, 611
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	4 cut(s)	128, 402, 477, 831
VpaK11BI	GGWCC	2 cut(s)	110, 485
XapI	RAATTY	2 cut(s)	133, 385
XcmI	CCANNNNNNNNNTGG	2 cut(s)	104, 794
XhoI	CTCGAG	1 cut(s)	273
XmiI	GTMKAC	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.