Prupe.5G234400_v2.0.a1
ERF Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0006438
Physical Location & Seq
Forward (+)
17796979 .. 17798779
1801 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G234400.1

Sequence Viewer

Length: 1173 bp
ATGGAGAGCACTGATGATGAGAAGGATGCAGTCTCCGGGAATTATATACCAAAGGAACTCACTCATGCTTTAGCATCTACTGGTGCGAAGTTTATCGATGAAGTCCTTAGCGGTCAAAATGAACGTTGTCTAGAAAATTTTCGCATGGATAAGCATGTCTTCTACAAGTTGTGTGATATTTTGCAAGGAAAGGGCTTATTGCGCCACACAAATCGAATCAAGATTGAAGAGCAATTAGCCATGTTCATGTTCATAATTGGTCATAATCTACGGACTCGAGCTGTTCAAGAGTTATTCCGTTATTCAGGAGAAACCATCAGTCGTCATTTCAACAATGTGTTGAACGCAATAAGGGCAATTTCATTAGATTTCTTCCAGCCTCCAGGATCTGATGTTCCTCCCGAAATTTCAGAAGATCCTAGATTCTATCCATATTTTAAGGATTGTGTGGGAGCGGTTGATGGTATACACATCCCAGTGATGGTAGGCGTAGATGAGCAAGGACCTTTCCGCAACAAGAATGGCTTACTTTCACAAAATGTTCTGGCTGCTTGCTCATTTGATCTCAAGTTCCATTATGTCTTGGCGGGTTGGGAAGGCTCTGCATCAGATTTGCAAGTTTTAAATTCTGCACTCACAAGACGAAACAAATTGCAGACCCCAGAAGGGAGATACTACCTGGTGGACAACAAGTATGCAAATATGCCTGGCTTCATTGCTCCATATCCTGGTGTACCTTATCACTCGAAGGAGTTTCCTAGTGGTTTTCACCCTCAAGATGCGAAAGAGCTATTTAATCAACGACACTCGATGTTACGAAATGCATCTGATCGCATTTTTGGGGCTTTAAAGGCACGCTTCCCTATCCTGATGGCAGCTCCTCCATACCCCTTACAAACACAAGTCAAGTTGGTTGTGGCAGCATGTGCCCTACACAATTACATGCGTAGGGAGAAACCAGATGACTGGATTTTTAAAATGTATGAGAAGGACACCATACTGCAAATGGAGGAATCATTGCCCCCGCTAGAGGTGGAACCAATGATGCATTTTGAGGCCTCTGCTATGGACATTGCTTTTGGGACAGAAGAACTGGAGTTTACTTCGCAGTTGCGGGACTCAATTGCGACTGAAATGTGGGATGACTATATCCATGATTTATCTCCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4

Protein Analysis

391

Amino Acids

44.57

Weight (kDa)

5.49

Isoelectric Point (pI)

51.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 728
AccBSI CCGCTC 1 cut(s) 455
AccI GTMKAC 1 cut(s) 466
AciI CCGC 6 cut(s) 111, 455, 511, 587, 1025, 1114
AclI AACGTT 1 cut(s) 124
AclWI GGATC 2 cut(s) 394, 410
AcsI RAATTY 3 cut(s) 136, 405, 625
AfaI GTAC 1 cut(s) 735
AfiI CCNNNNNNNGG 4 cut(s) 481, 666, 728, 1030
AgsI TTSAA 4 cut(s) 227, 287, 331, 343
AjnI CCWGG 4 cut(s) 382, 678, 706, 727
AloI GAACNNNNNNTCC 2 cut(s) 378, 410
AluBI AGCT 3 cut(s) 281, 790, 878
AluI AGCT 3 cut(s) 281, 790, 878
Alw21I GWGCWC 1 cut(s) 11
Alw26I GTCTC 1 cut(s) 37
AlwI GGATC 2 cut(s) 394, 410
AlwNI CAGNNNCTG 1 cut(s) 389
Ama87I CYCGRG 1 cut(s) 276
AoxI GGCC 1 cut(s) 1056
ApeKI GCWGC 3 cut(s) 548, 875, 920
ApoI RAATTY 3 cut(s) 136, 405, 625
ArsI GACNNNNNNTTYG 2 cut(s) 1061, 1093
Asp700I GAANNNNTTC 1 cut(s) 138
AspLEI GCGC 1 cut(s) 204
AspS9I GGNCC 1 cut(s) 503
AsuC2I CCSGG 1 cut(s) 37
AsuHPI GGTGA 1 cut(s) 761
AvaI CYCGRG 1 cut(s) 276
AvaII GGWCC 1 cut(s) 503
BaeGI GKGCMC 1 cut(s) 931
BbsI GAAGAC 1 cut(s) 151
Bbv12I GWGCWC 1 cut(s) 11
BbvI GCAGC 3 cut(s) 535, 887, 932
BccI CCATC 4 cut(s) 323, 455, 475, 865
BciT130I CCWGG 4 cut(s) 384, 680, 708, 729
BcnI CCSGG 1 cut(s) 37
BcoDI GTCTC 1 cut(s) 37
BfaI CTAG 4 cut(s) 131, 420, 759, 1028
BisI GCNGC 3 cut(s) 549, 876, 921
BlsI GCNGC 3 cut(s) 550, 877, 922
Bme1390I CCNGG 5 cut(s) 37, 384, 680, 708, 729
Bme18I GGWCC 1 cut(s) 503
BmeT110I CYCGRG 1 cut(s) 276
BmgT120I GGNCC 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 1038
BmrFI CCNGG 5 cut(s) 37, 384, 680, 708, 729
BmrI ACTGGG 1 cut(s) 470
BmsI GCATC 6 cut(s) 16, 83, 614, 769, 833, 1035
BmuI ACTGGG 1 cut(s) 470
BpiI GAAGAC 1 cut(s) 151
BpmI CTGGAG 2 cut(s) 366, 1115
Bpu10I CCTNAGC 1 cut(s) 107
BpuEI CTTGAG 2 cut(s) 551, 759
BpuMI CCSGG 1 cut(s) 37
Bsa29I ATCGAT 1 cut(s) 96
Bsc4I CCNNNNNNNGG 4 cut(s) 481, 666, 728, 1030
Bse1I ACTGG 4 cut(s) 85, 476, 971, 1098
Bse3DI GCAATG 3 cut(s) 714, 1016, 1071
BseBI CCWGG 4 cut(s) 384, 680, 708, 729
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 3 cut(s) 31, 471, 1147
BseLI CCNNNNNNNGG 4 cut(s) 481, 666, 728, 1030
BseMI GCAATG 3 cut(s) 714, 1016, 1071
BseNI ACTGG 4 cut(s) 85, 476, 971, 1098
BseRI GAGGAG 1 cut(s) 870
BseSI GKGCMC 1 cut(s) 931
BseXI GCAGC 3 cut(s) 535, 887, 932
BsgI GTGCAG 1 cut(s) 615
BshFI GGCC 1 cut(s) 1058
BshVI ATCGAT 1 cut(s) 96
BsiHKAI GWGCWC 1 cut(s) 11
BsiHKCI CYCGRG 1 cut(s) 276
BsiSI CCGG 1 cut(s) 36
BslFI GGGAC 2 cut(s) 1096, 1130
BslI CCNNNNNNNGG 4 cut(s) 481, 666, 728, 1030
BsmAI GTCTC 1 cut(s) 37
BsmFI GGGAC 2 cut(s) 1096, 1130
BsnI GGCC 1 cut(s) 1058
BsoBI CYCGRG 1 cut(s) 276
Bsp1286I GDGCHC 2 cut(s) 11, 931
Bsp143I GATC 4 cut(s) 386, 415, 562, 829
BspACI CCGC 6 cut(s) 111, 455, 511, 587, 1025, 1114
BspANI GGCC 1 cut(s) 1058
BspDI ATCGAT 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 1038
BspPI GGATC 2 cut(s) 394, 410
BspQI GCTCTTC 1 cut(s) 222
BsrBI CCGCTC 1 cut(s) 455
BsrDI GCAATG 3 cut(s) 714, 1016, 1071
BsrI ACTGG 4 cut(s) 85, 476, 971, 1098
BssMI GATC 4 cut(s) 386, 415, 562, 829
BssNAI GTATAC 1 cut(s) 467
Bst1107I GTATAC 1 cut(s) 467
Bst2UI CCWGG 4 cut(s) 384, 680, 708, 729
Bst6I CTCTTC 1 cut(s) 222
BstAPI GCANNNNNTGC 1 cut(s) 926
BstC8I GCNNGC 2 cut(s) 553, 856
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 3 cut(s) 31, 471, 1147
BstHHI GCGC 1 cut(s) 204
BstKTI GATC 4 cut(s) 389, 418, 565, 832
BstMAI GTCTC 1 cut(s) 37
BstMBI GATC 4 cut(s) 386, 415, 562, 829
BstMWI GCNNNNNNNGC 4 cut(s) 201, 353, 851, 926
BstNI CCWGG 4 cut(s) 384, 680, 708, 729
BstNSI RCATGY 3 cut(s) 158, 927, 946
BstSCI CCNGG 5 cut(s) 35, 382, 678, 706, 727
BstSLI GKGCMC 1 cut(s) 931
BstV1I GCAGC 3 cut(s) 535, 887, 932
BstV2I GAAGAC 1 cut(s) 151
BstX2I RGATCY 2 cut(s) 386, 415
BstXI CCANNNNNNTGG 1 cut(s) 966
BstYI RGATCY 2 cut(s) 386, 415
BstZ17I GTATAC 1 cut(s) 467
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 1 cut(s) 1058
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 3 cut(s) 31, 471, 1147
BtsIMutI CAGTG 2 cut(s) 9, 483
Cac8I GCNNGC 2 cut(s) 553, 856
CaiI CAGNNNCTG 1 cut(s) 389
CfoI GCGC 1 cut(s) 204
Cfr13I GGNCC 1 cut(s) 503
ClaI ATCGAT 1 cut(s) 96
CsiI ACCWGGT 1 cut(s) 678
Csp6I GTAC 1 cut(s) 734
CviAII CATG 9 cut(s) 65, 145, 155, 241, 247, 924, 943, 1154, 1168
CviQI GTAC 1 cut(s) 734
DdeI CTNAG 1 cut(s) 107
DpnI GATC 4 cut(s) 388, 417, 564, 831
DpnII GATC 4 cut(s) 386, 415, 562, 829
DraI TTTAAA 3 cut(s) 624, 849, 976
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco147I AGGCCT 1 cut(s) 1058
Eco47I GGWCC 1 cut(s) 503
Eco88I CYCGRG 1 cut(s) 276
EcoO109I RGGNCCY 1 cut(s) 503
EcoRII CCWGG 4 cut(s) 382, 678, 706, 727
EcoT22I ATGCAT 2 cut(s) 826, 1050
FaeI CATG 9 cut(s) 68, 148, 158, 244, 250, 927, 946, 1157, 1171
FalI AAGNNNNNCTT 6 cut(s) 143, 175, 509, 541, 842, 874
FaqI GGGAC 2 cut(s) 1096, 1130
FatI CATG 9 cut(s) 64, 144, 154, 240, 246, 923, 942, 1153, 1167
FauI CCCGC 3 cut(s) 580, 1032, 1107
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 3 cut(s) 549, 876, 921
FokI GGATG 3 cut(s) 38, 458, 1154
Fsp4HI GCNGC 3 cut(s) 549, 876, 921
FspBI CTAG 4 cut(s) 131, 420, 759, 1028
GlaI GCGC 1 cut(s) 203
GluI GCNGC 3 cut(s) 549, 876, 921
GsuI CTGGAG 2 cut(s) 366, 1115
HaeIII GGCC 1 cut(s) 1058
HapII CCGG 1 cut(s) 36
HhaI GCGC 1 cut(s) 204
Hin1II CATG 9 cut(s) 68, 148, 158, 244, 250, 927, 946, 1157, 1171
Hin6I GCGC 1 cut(s) 202
HinP1I GCGC 1 cut(s) 202
HinfI GANTC 5 cut(s) 216, 274, 423, 1013, 1118
HpaII CCGG 1 cut(s) 36
HphI GGTGA 1 cut(s) 761
Hpy166II GTNNAC 4 cut(s) 467, 685, 734, 1101
Hpy188I TCNGA 4 cut(s) 391, 412, 610, 829
Hpy188III TCNNGA 7 cut(s) 131, 220, 287, 306, 401, 776, 868
Hpy8I GTNNAC 4 cut(s) 467, 685, 734, 1101
HpyAV CCTTC 5 cut(s) 16, 590, 659, 742, 982
HpyCH4IV ACGT 1 cut(s) 124
HpyF10VI GCNNNNNNNGC 4 cut(s) 201, 353, 851, 926
HpyF3I CTNAG 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 124
Hsp92II CATG 9 cut(s) 68, 148, 158, 244, 250, 927, 946, 1157, 1171
HspAI GCGC 1 cut(s) 202
Kzo9I GATC 4 cut(s) 386, 415, 562, 829
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 3 cut(s) 452, 724, 883
Lsp1109I GCAGC 3 cut(s) 535, 887, 932
LweI GCATC 6 cut(s) 16, 83, 614, 769, 833, 1035
MabI ACCWGGT 1 cut(s) 678
MaeI CTAG 4 cut(s) 131, 420, 759, 1028
MaeII ACGT 1 cut(s) 124
MaeIII GTNAC 1 cut(s) 813
MalI GATC 4 cut(s) 388, 417, 564, 831
MbiI CCGCTC 1 cut(s) 455
MboI GATC 4 cut(s) 386, 415, 562, 829
MboII GAAGA 5 cut(s) 151, 239, 364, 425, 1100
MfeI CAATTG 1 cut(s) 1122
MflI RGATCY 2 cut(s) 386, 415
MhlI GDGCHC 2 cut(s) 11, 931
MlyI GAGTC 2 cut(s) 268, 1112
MnlI CCTC 8 cut(s) 390, 408, 783, 891, 1003, 1024, 1048, 1069
Mph1103I ATGCAT 2 cut(s) 826, 1050
MroXI GAANNNNTTC 1 cut(s) 138
MseI TTAA 5 cut(s) 438, 623, 795, 848, 975
MslI CAYNNNNRTG 2 cut(s) 245, 476
MspI CCGG 1 cut(s) 36
MspR9I CCNGG 5 cut(s) 37, 384, 680, 708, 729
MunI CAATTG 1 cut(s) 1122
MvaI CCWGG 4 cut(s) 384, 680, 708, 729
MwoI GCNNNNNNNGC 4 cut(s) 201, 353, 851, 926
NciI CCSGG 1 cut(s) 37
NdeII GATC 4 cut(s) 386, 415, 562, 829
NlaIII CATG 9 cut(s) 68, 148, 158, 244, 250, 927, 946, 1157, 1171
NlaIV GGNNCC 1 cut(s) 1038
NsiI ATGCAT 2 cut(s) 826, 1050
NspI RCATGY 3 cut(s) 158, 927, 946
PaeR7I CTCGAG 1 cut(s) 276
PceI AGGCCT 1 cut(s) 1058
PciSI GCTCTTC 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 3 cut(s) 216, 423, 1013
PflMI CCANNNNNTGG 1 cut(s) 728
PfoI TCCNGGA 2 cut(s) 35, 382
PkrI GCNGC 3 cut(s) 550, 877, 922
PleI GAGTC 2 cut(s) 268, 1112
PpsI GAGTC 2 cut(s) 268, 1112
PpuMI RGGWCCY 1 cut(s) 503
Psp1406I AACGTT 1 cut(s) 124
Psp5II RGGWCCY 1 cut(s) 503
Psp6I CCWGG 4 cut(s) 382, 678, 706, 727
PspGI CCWGG 4 cut(s) 382, 678, 706, 727
PspN4I GGNNCC 1 cut(s) 1038
PspPI GGNCC 1 cut(s) 503
PspPPI RGGWCCY 1 cut(s) 503
PspXI VCTCGAGB 1 cut(s) 276
PstNI CAGNNNCTG 1 cut(s) 389
PsuI RGATCY 2 cut(s) 386, 415
RsaI GTAC 1 cut(s) 735
RsaNI GTAC 1 cut(s) 734
RseI CAYNNNNRTG 2 cut(s) 245, 476
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 5 cut(s) 438, 623, 795, 848, 975
SatI GCNGC 3 cut(s) 549, 876, 921
Sau3AI GATC 4 cut(s) 386, 415, 562, 829
Sau96I GGNCC 1 cut(s) 503
SchI GAGTC 2 cut(s) 268, 1112
ScrFI CCNGG 5 cut(s) 37, 384, 680, 708, 729
SduI GDGCHC 2 cut(s) 11, 931
SetI ASST 8 cut(s) 127, 283, 508, 681, 739, 792, 880, 1035
SexAI ACCWGGT 1 cut(s) 678
SfaNI GCATC 6 cut(s) 16, 83, 614, 769, 833, 1035
Sfr274I CTCGAG 1 cut(s) 276
SinI GGWCC 1 cut(s) 503
SlaI CTCGAG 1 cut(s) 276
SmiMI CAYNNNNRTG 2 cut(s) 245, 476
SmlI CTYRAG 3 cut(s) 276, 566, 774
SmoI CTYRAG 3 cut(s) 276, 566, 774
SseBI AGGCCT 1 cut(s) 1058
SsiI CCGC 6 cut(s) 111, 455, 511, 587, 1025, 1114
SspMI CTAG 4 cut(s) 131, 420, 759, 1028
StuI AGGCCT 1 cut(s) 1058
StyD4I CCNGG 5 cut(s) 35, 382, 678, 706, 727
TaiI ACGT 1 cut(s) 127
TaqI TCGA 5 cut(s) 96, 214, 277, 746, 809
TfiI GAWTC 3 cut(s) 216, 423, 1013
Tru1I TTAA 5 cut(s) 438, 623, 795, 848, 975
Tru9I TTAA 5 cut(s) 438, 623, 795, 848, 975
TscAI CASTG 2 cut(s) 16, 483
TseI GCWGC 3 cut(s) 548, 875, 920
TspDTI ATGAA 6 cut(s) 114, 135, 235, 241, 351, 703
TspGWI ACGGA 2 cut(s) 286, 287
TspRI CASTG 2 cut(s) 16, 483
Van91I CCANNNNNTGG 1 cut(s) 728
VpaK11BI GGWCC 1 cut(s) 503
XapI RAATTY 3 cut(s) 136, 405, 625
XbaI TCTAGA 1 cut(s) 130
XceI RCATGY 3 cut(s) 158, 927, 946
XcmI CCANNNNNNNNNTGG 1 cut(s) 1003
XhoI CTCGAG 1 cut(s) 276
XmiI GTMKAC 1 cut(s) 466
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 4 cut(s) 131, 420, 759, 1028
Zsp2I ATGCAT 2 cut(s) 826, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.