FvH4_4g05911
ERF Family

DDE superfamily endonuclease

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
5338704 .. 5341772
3069 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g05911.t6

Sequence Viewer

Length: 1449 bp
ATGAATTTCATGGACGAGGATGCTTCTTCGGGCTCTGGCGATGACGCCAATGTGGTCGATGGAAACAAGCATCAGCCTGGGATACCGTCAAACTCAGGGCGTAGGAAGAGAAGTCGCAAGGCTACGGGTGATGCTATAGTGGATGCTATGCTAGAAATAGCTGCCGCGTCGAAAATGAGGGCGAATGCAATAGTGAAGAGCGAGGATCGGTTTTCTATAAGCAAGTGCATAAAGTATCTTAATTGTTATTTTGCAGATACATCAGCTGAAATGGATGATTTCGACTTAGAACTGGATGAGTTGGAATTAACTGCAGCAGCGGCTGGGTACCATTATTATAGCAGTATTACCAAGCAACCTTGTCATAGTTTGTCACCCAGTAAAGGATGTGGATTTATGGCAGAGGTGCTAAATGGTCATGGTGTTGTGTTCCAGGAAATGTTTCGAATGGATAAAAATGTATTTCACAAATTGTGTGACATTCTTCGTCAAAGAGGCATGTTGCGTGATACTGCTGGTGTTATGATAGAGGAGCAGCTTGGAATATTTTTGAATATTATTGGCCATAATGAGCGGAACAGAGTAATCCAAGAGCGGTTTCATCACTCAGGTGAAACCATCAGCCGTCATTTCAACAATGTGTTGAAGGCAGTCAAGTCGCTTTCACGTGAATTTTTACTAACTCCAAACCCCAGCACTCCTCCAGAAATCCTTGGAAATAACAGATTTTATCCTTATTTTCAGGATTGTATCGGAGTCATTGGTGGGATGCACATTCCTGCCCAGGTACCAGCCAAAGATCAATCCCGCTTTCGTAATAAGAAAGGCGTTCTATCACAAAATGTGTTGGCAGCTTGCACGTTGGACCTTCAGTTTATATTCATTTATCCTGGTTGGGAAGGCTCTGCAGCAGGTTCACGTGTATTGAGAGCAGTCCTTGATGATCCACATCAAAATTTCCCACATATTCCTGAAGATAAATATTTCCTTGTTGATACTGGATATGCAAATATGAAGGGATTTATTGCGCCATTCGAAGGGGTCAGGTATCATATCCATGAATATAGAGGTGCTAATCAGTTGCCTAGAAATGCAAGGGAGCTATTTAACCATAGACATTCATCTCTTAGTAATGTCATCCGGAGGTCTTTCCATGTGTTGAAAACTAGGTTTCCTATTCTCAAAGTTGCTCCTCAGTATGCTTTTCATACTCAAAGAGATATAGTTATAGCTGCTTGTGTTCTACATAATTACATCCGACGTGAGTGCAAAAATGATTGGCTGTTTTCCAGCATGGAAGGGATGACAGTGGATGAGCCACCTGATGTTGATGAACATACTGATATCGGGTTGGTTTCTTCAGCACAAGACCAGGTTGCTTTTTCAATGAGAGAATCAATTTCTGCTGAAATGTGGAATCACTTTATGAATGGATGGGATCAGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

483

Amino Acids

54.63

Weight (kDa)

6.49

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 37 - 129 2.4e-36 Domain of unknown function (DUF8040)
DDE_Tnp_4 PF13359 165 - 327 6.7e-21 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 902
Acc65I GGTACC 2 cut(s) 327, 787
AccB1I GGYRCC 2 cut(s) 327, 787
AccBSI CCGCTC 2 cut(s) 574, 595
AccII CGCG 1 cut(s) 167
AccIII TCCGGA 1 cut(s) 1140
AciI CCGC 5 cut(s) 165, 320, 574, 595, 808
AclWI GGATC 3 cut(s) 213, 938, 1446
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 3 cut(s) 4, 671, 955
AcuI CTGAAG 3 cut(s) 854, 993, 1344
AcvI CACGTG 2 cut(s) 668, 920
AcyI GRCGYC 1 cut(s) 45
AfaI GTAC 2 cut(s) 329, 789
AfiI CCNNNNNNNGG 2 cut(s) 383, 1037
AflIII ACRYGT 1 cut(s) 919
AgsI TTSAA 5 cut(s) 553, 634, 646, 1162, 1386
AjiI CACGTC 1 cut(s) 1262
AjnI CCWGG 5 cut(s) 76, 432, 783, 889, 1371
AjuI GAANNNNNNNTTGG 2 cut(s) 582, 614
AleI CACNNNNGTG 1 cut(s) 609
AluBI AGCT 6 cut(s) 161, 266, 538, 854, 1102, 1232
AluI AGCT 6 cut(s) 161, 266, 538, 854, 1102, 1232
AlwI GGATC 3 cut(s) 213, 938, 1446
AlwNI CAGNNNCTG 1 cut(s) 323
Aor13HI TCCGGA 1 cut(s) 1140
AoxI GGCC 1 cut(s) 562
ApeKI GCWGC 7 cut(s) 161, 314, 317, 535, 851, 908, 1232
ApoI RAATTY 3 cut(s) 4, 671, 955
Asp700I GAANNNNTTC 1 cut(s) 441
Asp718I GGTACC 2 cut(s) 327, 787
AspLEI GCGC 1 cut(s) 1030
AspS9I GGNCC 1 cut(s) 865
AsuHPI GGTGA 3 cut(s) 140, 366, 623
AsuII TTCGAA 2 cut(s) 445, 1035
AvaII GGWCC 1 cut(s) 865
BalI TGGCCA 1 cut(s) 564
BanI GGYRCC 2 cut(s) 327, 787
BanII GRGCYC 1 cut(s) 35
BbrPI CACGTG 2 cut(s) 668, 920
BbvI GCAGC 7 cut(s) 148, 326, 329, 547, 863, 920, 1219
BccI CCATC 3 cut(s) 53, 626, 1428
BceAI ACGGC 1 cut(s) 609
BcgI CGANNNNNNTGC 4 cut(s) 639, 673, 1248, 1282
BciT130I CCWGG 5 cut(s) 78, 434, 785, 891, 1373
BciVI GTATCC 1 cut(s) 75
BfaI CTAG 3 cut(s) 152, 1086, 1167
BfmI CTRYAG 3 cut(s) 135, 312, 906
BfuAI ACCTGC 1 cut(s) 902
BfuI GTATCC 1 cut(s) 75
BisI GCNGC 9 cut(s) 162, 165, 315, 318, 321, 536, 852, 909, 1233
BlsI GCNGC 9 cut(s) 163, 166, 316, 319, 322, 537, 853, 910, 1234
Bme1390I CCNGG 5 cut(s) 78, 434, 785, 891, 1373
Bme18I GGWCC 1 cut(s) 865
BmgBI CACGTC 1 cut(s) 1262
BmgT120I GGNCC 1 cut(s) 865
BmiI GGNNCC 2 cut(s) 329, 789
BmrFI CCNGG 5 cut(s) 78, 434, 785, 891, 1373
BmrI ACTGGG 1 cut(s) 372
BmsI GCATC 5 cut(s) 10, 79, 121, 133, 759
BmuI ACTGGG 1 cut(s) 372
BpmI CTGGAG 1 cut(s) 687
Bpu14I TTCGAA 2 cut(s) 445, 1035
BsaAI YACGTR 2 cut(s) 668, 920
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 1 cut(s) 45
BsaJI CCNNGG 3 cut(s) 77, 712, 783
BsaWI WCCGGW 1 cut(s) 1140
Bsc4I CCNNNNNNNGG 2 cut(s) 383, 1037
Bse1I ACTGG 3 cut(s) 297, 378, 1003
Bse8I GATNNNNATC 1 cut(s) 948
BseAI TCCGGA 1 cut(s) 1140
BseBI CCWGG 5 cut(s) 78, 434, 785, 891, 1373
BseDI CCNNGG 3 cut(s) 77, 712, 783
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 2 cut(s) 383, 1037
BseMII CTCAG 3 cut(s) 108, 621, 1208
BseNI ACTGG 3 cut(s) 297, 378, 1003
BseRI GAGGAG 3 cut(s) 545, 690, 1182
BseXI GCAGC 7 cut(s) 148, 326, 329, 547, 863, 920, 1219
BseYI CCCAGC 2 cut(s) 323, 692
Bsh1236I CGCG 1 cut(s) 167
BshFI GGCC 1 cut(s) 564
BshNI GGYRCC 2 cut(s) 327, 787
BsiSI CCGG 1 cut(s) 1141
BslI CCNNNNNNNGG 2 cut(s) 383, 1037
BsmI GAATGC 1 cut(s) 190
BsnI GGCC 1 cut(s) 564
Bsp119I TTCGAA 2 cut(s) 445, 1035
Bsp1286I GDGCHC 1 cut(s) 35
Bsp13I TCCGGA 1 cut(s) 1140
Bsp143I GATC 4 cut(s) 205, 799, 943, 1438
BspACI CCGC 5 cut(s) 165, 320, 574, 595, 808
BspANI GGCC 1 cut(s) 564
BspCNI CTCAG 3 cut(s) 107, 620, 1207
BspEI TCCGGA 1 cut(s) 1140
BspFNI CGCG 1 cut(s) 167
BspLI GGNNCC 2 cut(s) 329, 789
BspMAI CTGCAG 2 cut(s) 316, 910
BspMI ACCTGC 1 cut(s) 902
BspPI GGATC 3 cut(s) 213, 938, 1446
BspQI GCTCTTC 1 cut(s) 191
BspT104I TTCGAA 2 cut(s) 445, 1035
BspT107I GGYRCC 2 cut(s) 327, 787
BsrBI CCGCTC 2 cut(s) 574, 595
BsrI ACTGG 3 cut(s) 297, 378, 1003
BssECI CCNNGG 3 cut(s) 77, 712, 783
BssMI GATC 4 cut(s) 205, 799, 943, 1438
BssNI GRCGYC 1 cut(s) 45
BssT1I CCWWGG 1 cut(s) 712
Bst2UI CCWGG 5 cut(s) 78, 434, 785, 891, 1373
Bst4CI ACNGT 2 cut(s) 87, 1309
Bst6I CTCTTC 2 cut(s) 101, 191
BstACI GRCGYC 1 cut(s) 45
BstBAI YACGTR 2 cut(s) 668, 920
BstBI TTCGAA 2 cut(s) 445, 1035
BstC8I GCNNGC 1 cut(s) 856
BstDEI CTNAG 5 cut(s) 94, 286, 607, 1127, 1194
BstFNI CGCG 1 cut(s) 167
BstHHI GCGC 1 cut(s) 1030
BstKTI GATC 4 cut(s) 208, 802, 946, 1441
BstMBI GATC 4 cut(s) 205, 799, 943, 1438
BstMWI GCNNNNNNNGC 1 cut(s) 320
BstNI CCWGG 5 cut(s) 78, 434, 785, 891, 1373
BstNSI RCATGY 1 cut(s) 502
BstSCI CCNGG 5 cut(s) 76, 432, 783, 889, 1371
BstSFI CTRYAG 3 cut(s) 135, 312, 906
BstUI CGCG 1 cut(s) 167
BstV1I GCAGC 7 cut(s) 148, 326, 329, 547, 863, 920, 1219
BsuI GTATCC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 564
BtgZI GCGATG 1 cut(s) 54
BtrI CACGTC 1 cut(s) 1262
BtsIMutI CAGTG 2 cut(s) 1314, 1448
BveI ACCTGC 1 cut(s) 902
Cac8I GCNNGC 1 cut(s) 856
CaiI CAGNNNCTG 1 cut(s) 323
CfoI GCGC 1 cut(s) 1030
Cfr13I GGNCC 1 cut(s) 865
CseI GACGC 2 cut(s) 53, 156
CsiI ACCWGGT 1 cut(s) 1371
Csp6I GTAC 2 cut(s) 328, 788
CviAII CATG 6 cut(s) 10, 419, 499, 1058, 1154, 1294
CviQI GTAC 2 cut(s) 328, 788
DdeI CTNAG 5 cut(s) 94, 286, 607, 1127, 1194
DpnI GATC 4 cut(s) 207, 801, 945, 1440
DpnII GATC 4 cut(s) 205, 799, 943, 1438
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 101, 191
EarI CTCTTC 2 cut(s) 101, 191
Eco130I CCWWGG 1 cut(s) 712
Eco24I GRGCYC 1 cut(s) 35
Eco32I GATATC 1 cut(s) 1345
Eco47I GGWCC 1 cut(s) 865
Eco57I CTGAAG 3 cut(s) 854, 993, 1344
Eco72I CACGTG 2 cut(s) 668, 920
EcoRII CCWGG 5 cut(s) 76, 432, 783, 889, 1371
EcoRV GATATC 1 cut(s) 1345
EcoT14I CCWWGG 1 cut(s) 712
EcoT38I GRGCYC 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 712
FaeI CATG 6 cut(s) 13, 422, 502, 1061, 1157, 1297
FatI CATG 6 cut(s) 9, 418, 498, 1057, 1153, 1293
FauI CCCGC 1 cut(s) 815
Fnu4HI GCNGC 9 cut(s) 162, 165, 315, 318, 321, 536, 852, 909, 1233
FriOI GRGCYC 1 cut(s) 35
Fsp4HI GCNGC 9 cut(s) 162, 165, 315, 318, 321, 536, 852, 909, 1233
FspBI CTAG 3 cut(s) 152, 1086, 1167
GlaI GCGC 1 cut(s) 1029
GluI GCNGC 9 cut(s) 162, 165, 315, 318, 321, 536, 852, 909, 1233
GsaI CCCAGC 2 cut(s) 327, 696
GsuI CTGGAG 1 cut(s) 687
HaeIII GGCC 1 cut(s) 564
HapII CCGG 1 cut(s) 1141
HgaI GACGC 2 cut(s) 53, 156
HhaI GCGC 1 cut(s) 1030
Hin1I GRCGYC 1 cut(s) 45
Hin1II CATG 6 cut(s) 13, 422, 502, 1061, 1157, 1297
Hin6I GCGC 1 cut(s) 1028
HinP1I GCGC 1 cut(s) 1028
HinfI GANTC 3 cut(s) 756, 1394, 1417
HpaII CCGG 1 cut(s) 1141
HphI GGTGA 3 cut(s) 140, 366, 623
Hpy166II GTNNAC 1 cut(s) 917
Hpy188I TCNGA 2 cut(s) 755, 1259
Hpy188III TCNNGA 4 cut(s) 704, 743, 971, 1141
Hpy8I GTNNAC 1 cut(s) 917
Hpy99I CGWCG 2 cut(s) 172, 1263
HpyAV CCTTC 6 cut(s) 640, 878, 893, 1009, 1031, 1292
HpyCH4III ACNGT 2 cut(s) 87, 1309
HpyCH4IV ACGT 4 cut(s) 667, 860, 919, 1261
HpyF10VI GCNNNNNNNGC 1 cut(s) 320
HpyF3I CTNAG 5 cut(s) 94, 286, 607, 1127, 1194
HpySE526I ACGT 4 cut(s) 667, 860, 919, 1261
Hsp92I GRCGYC 1 cut(s) 45
Hsp92II CATG 6 cut(s) 13, 422, 502, 1061, 1157, 1297
HspAI GCGC 1 cut(s) 1028
Kpn2I TCCGGA 1 cut(s) 1140
KpnI GGTACC 2 cut(s) 331, 791
Kzo9I GATC 4 cut(s) 205, 799, 943, 1438
LguI GCTCTTC 1 cut(s) 191
LmnI GCTCC 3 cut(s) 532, 1099, 1195
Lsp1109I GCAGC 7 cut(s) 148, 326, 329, 547, 863, 920, 1219
LweI GCATC 5 cut(s) 10, 79, 121, 133, 759
MabI ACCWGGT 1 cut(s) 1371
MaeI CTAG 3 cut(s) 152, 1086, 1167
MaeII ACGT 4 cut(s) 667, 860, 919, 1261
MaeIII GTNAC 2 cut(s) 372, 476
MalI GATC 4 cut(s) 207, 801, 945, 1440
MbiI CCGCTC 2 cut(s) 574, 595
MboI GATC 4 cut(s) 205, 799, 943, 1438
MboII GAAGA 6 cut(s) 18, 118, 208, 476, 986, 1350
MhlI GDGCHC 1 cut(s) 35
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 8 cut(s) 4, 241, 305, 470, 671, 955, 1249, 1398
MluNI TGGCCA 1 cut(s) 564
MlyI GAGTC 1 cut(s) 765
MmeI TCCRAC 3 cut(s) 282, 843, 1282
Mox20I TGGCCA 1 cut(s) 564
MroI TCCGGA 1 cut(s) 1140
MroXI GAANNNNTTC 1 cut(s) 441
MscI TGGCCA 1 cut(s) 564
MseI TTAA 3 cut(s) 240, 308, 1107
MslI CAYNNNNRTG 2 cut(s) 609, 1056
Msp20I TGGCCA 1 cut(s) 564
MspA1I CMGCKG 2 cut(s) 266, 320
MspI CCGG 1 cut(s) 1141
MspR9I CCNGG 5 cut(s) 78, 434, 785, 891, 1373
Mva1269I GAATGC 1 cut(s) 190
MvaI CCWGG 5 cut(s) 78, 434, 785, 891, 1373
MvnI CGCG 1 cut(s) 167
MwoI GCNNNNNNNGC 1 cut(s) 320
NdeII GATC 4 cut(s) 205, 799, 943, 1438
NlaIII CATG 6 cut(s) 13, 422, 502, 1061, 1157, 1297
NlaIV GGNNCC 2 cut(s) 329, 789
NmuCI GTSAC 2 cut(s) 372, 476
NspI RCATGY 1 cut(s) 502
NspV TTCGAA 2 cut(s) 445, 1035
OliI CACNNNNGTG 1 cut(s) 609
PciSI GCTCTTC 1 cut(s) 191
PctI GAATGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 441
PfeI GAWTC 2 cut(s) 1394, 1417
PfoI TCCNGGA 1 cut(s) 432
PkrI GCNGC 9 cut(s) 163, 166, 316, 319, 322, 537, 853, 910, 1234
PleI GAGTC 1 cut(s) 764
PmaCI CACGTG 2 cut(s) 668, 920
PmlI CACGTG 2 cut(s) 668, 920
PpsI GAGTC 1 cut(s) 764
Ppu21I YACGTR 2 cut(s) 668, 920
Psp6I CCWGG 5 cut(s) 76, 432, 783, 889, 1371
PspCI CACGTG 2 cut(s) 668, 920
PspFI CCCAGC 2 cut(s) 323, 692
PspGI CCWGG 5 cut(s) 76, 432, 783, 889, 1371
PspN4I GGNNCC 2 cut(s) 329, 789
PspPI GGNCC 1 cut(s) 865
PstI CTGCAG 2 cut(s) 316, 910
PstNI CAGNNNCTG 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 266
RsaI GTAC 2 cut(s) 329, 789
RsaNI GTAC 2 cut(s) 328, 788
RseI CAYNNNNRTG 2 cut(s) 609, 1056
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 3 cut(s) 240, 308, 1107
SatI GCNGC 9 cut(s) 162, 165, 315, 318, 321, 536, 852, 909, 1233
Sau3AI GATC 4 cut(s) 205, 799, 943, 1438
Sau96I GGNCC 1 cut(s) 865
SchI GAGTC 1 cut(s) 765
ScrFI CCNGG 5 cut(s) 78, 434, 785, 891, 1373
SduI GDGCHC 1 cut(s) 35
SexAI ACCWGGT 1 cut(s) 1371
SfaNI GCATC 5 cut(s) 10, 79, 121, 133, 759
SfcI CTRYAG 3 cut(s) 135, 312, 906
SfuI TTCGAA 2 cut(s) 445, 1035
SinI GGWCC 1 cut(s) 865
SmiMI CAYNNNNRTG 2 cut(s) 609, 1056
Sse9I AATT 8 cut(s) 4, 241, 305, 470, 671, 955, 1249, 1398
SsiI CCGC 5 cut(s) 165, 320, 574, 595, 808
SspI AATATT 3 cut(s) 546, 556, 983
SspMI CTAG 3 cut(s) 152, 1086, 1167
StyD4I CCNGG 5 cut(s) 76, 432, 783, 889, 1371
StyI CCWWGG 1 cut(s) 712
TaaI ACNGT 2 cut(s) 87, 1309
TaiI ACGT 4 cut(s) 670, 863, 922, 1264
TaqI TCGA 5 cut(s) 57, 170, 282, 445, 1035
TasI AATT 8 cut(s) 4, 241, 305, 470, 671, 955, 1249, 1398
TauI GCSGC 2 cut(s) 167, 323
TfiI GAWTC 2 cut(s) 1394, 1417
Tru1I TTAA 3 cut(s) 240, 308, 1107
Tru9I TTAA 3 cut(s) 240, 308, 1107
TscAI CASTG 2 cut(s) 1314, 1448
TseFI GTSAC 2 cut(s) 372, 476
TseI GCWGC 7 cut(s) 161, 314, 317, 535, 851, 908, 1232
Tsp45I GTSAC 2 cut(s) 372, 476
TspDTI ATGAA 9 cut(s) 17, 590, 871, 1028, 1074, 1110, 1196, 1347, 1442
TspRI CASTG 2 cut(s) 1314, 1448
VpaK11BI GGWCC 1 cut(s) 865
XapI RAATTY 3 cut(s) 4, 671, 955
XceI RCATGY 1 cut(s) 502
XmnI GAANNNNTTC 1 cut(s) 441
XspI CTAG 3 cut(s) 152, 1086, 1167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.