Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0006438

Physical Location & Seq

Genomic Coordinates Forward (+)

23463393 .. 23464233

Gene Structure 841 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g20430.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGCCAGAAGGTAAATACTACCTTGTGGACAACAAGTATGCAAACATGCCTGGCTTCATTGCTCCATATCCTGGTATACCTTATCACTCGATGGAGTTTCCTAGTGGTTATCATCCTCAAGATGCGAAAGAGCTATTTAATCAGCGACACTCATTGTTACGAAATGCATCTGAACGCACTTTTGGGGCTTTAAAAGAACGCTTCCCTATACTGATGTCAGCTCCTCCGTACCCATTGCAAACACAAGTCAAGTTGGTTGTGGCAGCGTGTGCCCTACACAATTTCATCCACGAGGAGAAACCAGATGACTGGATCTTTAAAACGTATGAAAAGGACACCATACTGCAAATGGAGGAACCATTTCCCCCATTAGCGGTGCTTGAGCCACCAATCATGCATTTTGAGGCCTCTGGTTTTGACACAGAAGAACTTGAATTCAGTTCGCAGATGCGGGATTCGATTGCAAGTGAAATGTGGGATGACTATATCCATGATTTATCTCCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

170

Amino Acids

19.59

Weight (kDa)

4.81

Isoelectric Point (pI)

63.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41980
fragaria_vesca	FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911
malus_domestica	MD00G1159500.v1.1 MD06G1227900.v1.1 MD14G1237100.v1.1
prunus_persica	Prupe.5G234400_v2.0.a1 Prupe.7G000100_v2.0.a1
pyrus_communis	pycom06g20420 pycom06g20430 pycom12g00010 pycom14g19810
rosa_chinensis	RchiOBHm_Chr1g0313091 RchiOBHm_Chr6g0248041
rosa_multiflora	Rmu_sc0001606.1_g000006 Rmu_sc0030940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332540
rosa_samantha	Rh1CG001900 Rh1CG005100 Rh6BG040400
rosa_wichuraiana	Rw0G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccI	GTMKAC	1 cut(s)	76
AciI	CCGC	2 cut(s)	374, 451
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	1 cut(s)	434
AfaI	GTAC	1 cut(s)	230
AfiI	CCNNNNNNNGG	2 cut(s)	71, 373
AgsI	TTSAA	1 cut(s)	434
AjnI	CCWGG	2 cut(s)	49, 70
AjuI	GAANNNNNNNTTGG	2 cut(s)	165, 197
AluBI	AGCT	2 cut(s)	133, 221
AluI	AGCT	2 cut(s)	133, 221
AlwI	GGATC	1 cut(s)	320
AoxI	GGCC	1 cut(s)	405
ApeKI	GCWGC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	360
BaeGI	GKGCMC	1 cut(s)	274
BauI	CACGAG	1 cut(s)	290
BbvI	GCAGC	1 cut(s)	275
BccI	CCATC	1 cut(s)	85
BciT130I	CCWGG	2 cut(s)	51, 72
BfaI	CTAG	1 cut(s)	102
BisI	GCNGC	1 cut(s)	264
BlsI	GCNGC	1 cut(s)	265
Bme1390I	CCNGG	2 cut(s)	51, 72
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	2 cut(s)	51, 72
BmsI	GCATC	3 cut(s)	112, 176, 438
BpuEI	CTTGAG	2 cut(s)	102, 401
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 373
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	2 cut(s)	57, 233
BseBI	CCWGG	2 cut(s)	51, 72
BseGI	GGATG	3 cut(s)	112, 285, 484
BseLI	CCNNNNNNNGG	2 cut(s)	71, 373
BseMI	GCAATG	2 cut(s)	57, 233
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	2 cut(s)	213, 308
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	275
BshFI	GGCC	1 cut(s)	407
BslI	CCNNNNNNNGG	2 cut(s)	71, 373
BsnI	GGCC	1 cut(s)	407
Bsp1286I	GDGCHC	1 cut(s)	274
Bsp143I	GATC	1 cut(s)	312
BspACI	CCGC	2 cut(s)	374, 451
BspANI	GGCC	1 cut(s)	407
BspLI	GGNNCC	1 cut(s)	357
BspPI	GGATC	1 cut(s)	320
BsrDI	GCAATG	2 cut(s)	57, 233
BsrI	ACTGG	1 cut(s)	314
BssMI	GATC	1 cut(s)	312
BssNAI	GTATAC	1 cut(s)	77
BssSI	CACGAG	1 cut(s)	290
Bst1107I	GTATAC	1 cut(s)	77
Bst2BI	CACGAG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	51, 72
BstAPI	GCANNNNNTGC	1 cut(s)	269
BstF5I	GGATG	3 cut(s)	112, 285, 484
BstKTI	GATC	1 cut(s)	315
BstMBI	GATC	1 cut(s)	312
BstMWI	GCNNNNNNNGC	1 cut(s)	269
BstNI	CCWGG	2 cut(s)	51, 72
BstNSI	RCATGY	1 cut(s)	49
BstSCI	CCNGG	2 cut(s)	49, 70
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	275
BstX2I	RGATCY	1 cut(s)	312
BstXI	CCANNNNNNTGG	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	312
BstZ17I	GTATAC	1 cut(s)	77
BsuRI	GGCC	1 cut(s)	407
BtsCI	GGATG	3 cut(s)	112, 285, 484
Csp6I	GTAC	1 cut(s)	229
CviAII	CATG	4 cut(s)	46, 394, 491, 505
CviJI	RGCY	6 cut(s)	54, 133, 188, 221, 385, 407
CviKI_1	RGCY	6 cut(s)	54, 133, 188, 221, 385, 407
CviQI	GTAC	1 cut(s)	229
DpnI	GATC	1 cut(s)	314
DpnII	GATC	1 cut(s)	312
DraI	TTTAAA	2 cut(s)	192, 319
Eco147I	AGGCCT	1 cut(s)	407
EcoRI	GAATTC	1 cut(s)	434
EcoRII	CCWGG	2 cut(s)	49, 70
EcoT22I	ATGCAT	2 cut(s)	169, 399
FaeI	CATG	4 cut(s)	49, 397, 494, 508
FatI	CATG	4 cut(s)	45, 393, 490, 504
FauI	CCCGC	1 cut(s)	444
FblI	GTMKAC	1 cut(s)	76
Fnu4HI	GCNGC	1 cut(s)	264
FokI	GGATG	3 cut(s)	99, 272, 491
Fsp4HI	GCNGC	1 cut(s)	264
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	1 cut(s)	264
HaeIII	GGCC	1 cut(s)	407
Hin1II	CATG	4 cut(s)	49, 397, 494, 508
HinfI	GANTC	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	28, 77
Hpy188I	TCNGA	1 cut(s)	172
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	28, 77
HpyCH4IV	ACGT	1 cut(s)	323
HpyCH4V	TGCA	6 cut(s)	41, 167, 238, 346, 397, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	269
HpySE526I	ACGT	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	49, 397, 494, 508
Kzo9I	GATC	1 cut(s)	312
LmnI	GCTCC	2 cut(s)	67, 226
LpnPI	CCDG	8 cut(s)	18, 36, 57, 63, 84, 295, 315, 396
Lsp1109I	GCAGC	1 cut(s)	275
LweI	GCATC	3 cut(s)	112, 176, 438
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	1 cut(s)	323
MaeIII	GTNAC	1 cut(s)	156
MalI	GATC	1 cut(s)	314
MboI	GATC	1 cut(s)	312
MboII	GAAGA	1 cut(s)	437
MflI	RGATCY	1 cut(s)	312
MhlI	GDGCHC	1 cut(s)	274
MluCI	AATT	2 cut(s)	280, 434
MnlI	CCTC	6 cut(s)	126, 234, 286, 346, 397, 418
Mph1103I	ATGCAT	2 cut(s)	169, 399
MroXI	GAANNNNTTC	1 cut(s)	360
MseI	TTAA	3 cut(s)	138, 191, 318
MspR9I	CCNGG	2 cut(s)	51, 72
MvaI	CCWGG	2 cut(s)	51, 72
MwoI	GCNNNNNNNGC	1 cut(s)	269
NdeII	GATC	1 cut(s)	312
NlaIII	CATG	4 cut(s)	49, 397, 494, 508
NlaIV	GGNNCC	1 cut(s)	357
NsiI	ATGCAT	2 cut(s)	169, 399
NspI	RCATGY	1 cut(s)	49
PceI	AGGCCT	1 cut(s)	407
PdmI	GAANNNNTTC	1 cut(s)	360
PfeI	GAWTC	1 cut(s)	455
PflMI	CCANNNNNTGG	1 cut(s)	71
PkrI	GCNGC	1 cut(s)	265
Psp6I	CCWGG	2 cut(s)	49, 70
PspGI	CCWGG	2 cut(s)	49, 70
PspN4I	GGNNCC	1 cut(s)	357
PsuI	RGATCY	1 cut(s)	312
RsaI	GTAC	1 cut(s)	230
RsaNI	GTAC	1 cut(s)	229
SaqAI	TTAA	3 cut(s)	138, 191, 318
SatI	GCNGC	1 cut(s)	264
Sau3AI	GATC	1 cut(s)	312
ScrFI	CCNGG	2 cut(s)	51, 72
SduI	GDGCHC	1 cut(s)	274
SetI	ASST	6 cut(s)	13, 24, 82, 135, 223, 326
SfaNI	GCATC	3 cut(s)	112, 176, 438
SmlI	CTYRAG	2 cut(s)	117, 380
SmoI	CTYRAG	2 cut(s)	117, 380
Sse9I	AATT	2 cut(s)	280, 434
SseBI	AGGCCT	1 cut(s)	407
SsiI	CCGC	2 cut(s)	374, 451
SspMI	CTAG	1 cut(s)	102
StuI	AGGCCT	1 cut(s)	407
StyD4I	CCNGG	2 cut(s)	49, 70
TaiI	ACGT	1 cut(s)	326
TaqI	TCGA	2 cut(s)	89, 458
TasI	AATT	2 cut(s)	280, 434
TfiI	GAWTC	1 cut(s)	455
Tru1I	TTAA	3 cut(s)	138, 191, 318
Tru9I	TTAA	3 cut(s)	138, 191, 318
TseI	GCWGC	1 cut(s)	263
TspDTI	ATGAA	3 cut(s)	46, 274, 342
TspGWI	ACGGA	1 cut(s)	216
Van91I	CCANNNNNTGG	1 cut(s)	71
XapI	RAATTY	1 cut(s)	434
XceI	RCATGY	1 cut(s)	49
XcmI	CCANNNNNNNNNTGG	1 cut(s)	346
XmiI	GTMKAC	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	360
XspI	CTAG	1 cut(s)	102
Zsp2I	ATGCAT	2 cut(s)	169, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.