pycom14g19810
ERF Family

DDE superfamily endonuclease

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
Physical Location & Seq
Forward (+)
21039544 .. 21043060
3517 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom14g19810.1

Sequence Viewer

Length: 1527 bp
ATGAATAACTTAACATCATTTCGAGTCAAAGTAACAGTAGCAAAAGAAATTGCCAGCCCACCCTCCTCCCCCAGTCTGAAGTTTGCAGAAGACTGCAAATTACAAATTTATCGAGAAAATAAAAAGGAGAGAGCGCGAGCGACGGCAAAGTGCGAAAGCAAACGCACAGAATCAACGGAGAATGTGACGTCACTCAGTGGCTCACCTCACTCACTCATAACTCCCTTAAATTCAAAAACCCAACGATTCTGTTCATCTCACACATTTCTCTCGTTCCGCCCCCAAGCCGCCGGCGACGACGTCGTTTGCCTCCTGAAGTTGCAGAAGCTCAGCTCTCCGCAGTTGGTAATGGAGATCTCTGAAGATGAAAAGGATACAGTCTATGAGAATTATATACCGAAAGAACTTAGTCATGCTTTATCATCTACTGGTGCAAAGTTTATAGATGAAGTCCTTAATGGTCAAAATGAACGCTGTTTAGAGAACTTTCGCATGGATAAGCATGTCTTCTACAAGTTGTGTGATATTTTGCAAGGAAAAGGCCTACTGCGCCACACAAATCGAATCAAGATTGAAGAGCAATTGGCCATGTTCTTGTTCATAATTGGTCATAATCTACGGACCCGAGCTGTTCAAGAGTTATTTCGTTATTCAGGAGAAACCATTAGTCGTCATTTCAACAATGTCTTAAACGCAGTAATGGCAATTTCGATAGGTTTCTTTCAGCCTCCAGGATCTGCTGTTCCTCCCGAAATTTCAGAAAATCCTAGATTTTATCCATATTTTAAGGATTGTGTGGGAGCAGTTGATGGCATACACTTCCCAGTGATGGTGGGGGTAGATGAGCAAGGACCTTTCCGCGACAAGAATGGCTTACTTTCACAAAATGTTCTGGCTGCTTGCTCATTTGATCTCAAGTTCCTTTATGTCTTGGCTGGTTGGGAAGGCTCTGCTTCAGATTTGCAAGTTTTGAATTCTGCTCTCACCAGACGAAACAAATTGCAGATGCCAGAAGGGAAATACTACCTCGTGGACAAGAAGTATCCAAACATGCCTGGCTTCATTGCTCCATATACTGGTATACCTTATCACTCAACGGAGTTTCCTAGTGGTTATCACCCTCAAGATGCAAAAGAGCTATTTAATCAGCGACACTCATTGCTACGAAATGCATCTGATCGCACTTTTGGGGCTTTAAAAGAACGTTTCCCTATATTGATGTCAGCCCCTCCGTACCCATTACAAACACAAGTCAAATTGGTTGTGGCAGCTTGTGCCCTACACAACTTCATCCGTGAGGAGAAACCAGATGACTGGATCTTTAAAATGTACGAAAAGGACACCATACTGCAAATGGAGGAATCAATTCCCCCGTTAGCAGAGGCGGAGCAACCAATCATTGCTTTTGAAACCTCTGCTTTGGACATTGCTTTTGAAACAGAAGAACTGGAATTCACTTCGCAGATGCGGGATTCGATTGCAAGTGAAATGTGGGATGACTATATCCATGATTTATCTCCCATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

509

Amino Acids

57.67

Weight (kDa)

5.88

Isoelectric Point (pI)

47.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF8040 PF26138 142 - 234 2.8e-38 Domain of unknown function (DUF8040)
Plant_tran PF04827 265 - 435 6.9e-08 Plant transposon protein
DDE_Tnp_4 PF13359 269 - 429 3.4e-19 DDE superfamily endonuclease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 191, 303
AccB7I CCANNNNNTGG 1 cut(s) 1076
AccI GTMKAC 1 cut(s) 1081
AccII CGCG 2 cut(s) 136, 861
AciI CCGC 6 cut(s) 277, 288, 338, 859, 1385, 1468
AclI AACGTT 1 cut(s) 1204
AclWI GGATC 2 cut(s) 742, 1325
AcoI YGGCCR 1 cut(s) 585
AcsI RAATTY 5 cut(s) 105, 229, 753, 973, 1451
AcuI CTGAAG 4 cut(s) 98, 335, 381, 939
AcyI GRCGYC 2 cut(s) 188, 300
AdeI CACNNNGTG 1 cut(s) 197
AfaI GTAC 2 cut(s) 1235, 1331
AfiI CCNNNNNNNGG 2 cut(s) 829, 1076
AgsI TTSAA 7 cut(s) 234, 575, 635, 679, 973, 1409, 1436
AjnI CCWGG 2 cut(s) 730, 1054
AloI GAACNNNNNNTCC 2 cut(s) 726, 758
AluBI AGCT 5 cut(s) 328, 333, 629, 1138, 1271
AluI AGCT 5 cut(s) 328, 333, 629, 1138, 1271
AlwI GGATC 2 cut(s) 742, 1325
AlwNI CAGNNNCTG 1 cut(s) 737
Ama87I CYCGRG 1 cut(s) 624
AoxI GGCC 2 cut(s) 541, 585
ApeKI GCWGC 2 cut(s) 896, 1268
ApoI RAATTY 5 cut(s) 105, 229, 753, 973, 1451
ArsI GACNNNNNNTTYG 2 cut(s) 1415, 1447
Asp700I GAANNNNTTC 1 cut(s) 1365
AspLEI GCGC 2 cut(s) 136, 552
AspS9I GGNCC 2 cut(s) 621, 851
AsuHPI GGTGA 3 cut(s) 195, 976, 1109
AvaI CYCGRG 1 cut(s) 624
AvaII GGWCC 2 cut(s) 621, 851
BaeGI GKGCMC 1 cut(s) 1279
BalI TGGCCA 1 cut(s) 587
BauI CACGAG 1 cut(s) 1028
BbsI GAAGAC 2 cut(s) 96, 499
BbvI GCAGC 2 cut(s) 883, 1280
BccI CCATC 2 cut(s) 803, 823
BceAI ACGGC 1 cut(s) 159
BciT130I CCWGG 2 cut(s) 732, 1056
BciVI GTATCC 2 cut(s) 367, 1053
BfaI CTAG 2 cut(s) 768, 1107
BfuI GTATCC 2 cut(s) 367, 1053
BglII AGATCT 1 cut(s) 354
BisI GCNGC 3 cut(s) 288, 897, 1269
BlpI GCTNAGC 1 cut(s) 329
BlsI GCNGC 3 cut(s) 289, 898, 1270
Bme1390I CCNGG 2 cut(s) 732, 1056
Bme18I GGWCC 2 cut(s) 621, 851
BmeT110I CYCGRG 1 cut(s) 624
BmgT120I GGNCC 2 cut(s) 621, 851
BmiI GGNNCC 1 cut(s) 623
BmrFI CCNGG 2 cut(s) 732, 1056
BmrI ACTGGG 2 cut(s) 66, 818
BmsI GCATC 4 cut(s) 996, 1117, 1181, 1455
BmuI ACTGGG 2 cut(s) 66, 818
BpiI GAAGAC 2 cut(s) 96, 499
BpmI CTGGAG 1 cut(s) 714
Bpu1102I GCTNAGC 1 cut(s) 329
BpuEI CTTGAG 2 cut(s) 899, 1107
BsaHI GRCGYC 2 cut(s) 188, 300
Bsc4I CCNNNNNNNGG 2 cut(s) 829, 1076
Bse118I RCCGGY 1 cut(s) 290
Bse1I ACTGG 6 cut(s) 72, 433, 824, 1081, 1319, 1452
Bse3DI GCAATG 4 cut(s) 1062, 1157, 1398, 1425
BseBI CCWGG 2 cut(s) 732, 1056
BseGI GGATG 2 cut(s) 1290, 1501
BseLI CCNNNNNNNGG 2 cut(s) 829, 1076
BseMI GCAATG 4 cut(s) 1062, 1157, 1398, 1425
BseMII CTCAG 2 cut(s) 208, 343
BseNI ACTGG 6 cut(s) 72, 433, 824, 1081, 1319, 1452
BseRI GAGGAG 2 cut(s) 55, 1313
BseSI GKGCMC 1 cut(s) 1279
BseXI GCAGC 2 cut(s) 883, 1280
Bsh1236I CGCG 2 cut(s) 136, 861
BshFI GGCC 2 cut(s) 543, 587
BsiHKCI CYCGRG 1 cut(s) 624
BsiSI CCGG 1 cut(s) 291
BslI CCNNNNNNNGG 2 cut(s) 829, 1076
BsnI GGCC 2 cut(s) 543, 587
BsoBI CYCGRG 1 cut(s) 624
Bsp1286I GDGCHC 1 cut(s) 1279
Bsp143I GATC 5 cut(s) 354, 734, 910, 1177, 1317
Bsp1720I GCTNAGC 1 cut(s) 329
BspACI CCGC 6 cut(s) 277, 288, 338, 859, 1385, 1468
BspANI GGCC 2 cut(s) 543, 587
BspCNI CTCAG 2 cut(s) 207, 342
BspFNI CGCG 2 cut(s) 136, 861
BspLI GGNNCC 1 cut(s) 623
BspPI GGATC 2 cut(s) 742, 1325
BspQI GCTCTTC 1 cut(s) 570
BsrDI GCAATG 4 cut(s) 1062, 1157, 1398, 1425
BsrFI RCCGGY 1 cut(s) 290
BsrI ACTGG 6 cut(s) 72, 433, 824, 1081, 1319, 1452
BssAI RCCGGY 1 cut(s) 290
BssMI GATC 5 cut(s) 354, 734, 910, 1177, 1317
BssNAI GTATAC 1 cut(s) 1082
BssNI GRCGYC 2 cut(s) 188, 300
BssSI CACGAG 1 cut(s) 1028
Bst1107I GTATAC 1 cut(s) 1082
Bst2BI CACGAG 1 cut(s) 1028
Bst2UI CCWGG 2 cut(s) 732, 1056
Bst4CI ACNGT 2 cut(s) 37, 379
Bst6I CTCTTC 1 cut(s) 570
BstACI GRCGYC 2 cut(s) 188, 300
BstAPI GCANNNNNTGC 1 cut(s) 1274
BstC8I GCNNGC 4 cut(s) 55, 138, 292, 901
BstDEI CTNAG 3 cut(s) 194, 329, 407
BstF5I GGATG 2 cut(s) 1290, 1501
BstFNI CGCG 2 cut(s) 136, 861
BstHHI GCGC 2 cut(s) 136, 552
BstKTI GATC 5 cut(s) 357, 737, 913, 1180, 1320
BstMBI GATC 5 cut(s) 354, 734, 910, 1177, 1317
BstMWI GCNNNNNNNGC 3 cut(s) 549, 701, 1274
BstNI CCWGG 2 cut(s) 732, 1056
BstNSI RCATGY 2 cut(s) 506, 1054
BstSCI CCNGG 2 cut(s) 730, 1054
BstSLI GKGCMC 1 cut(s) 1279
BstUI CGCG 2 cut(s) 136, 861
BstV1I GCAGC 2 cut(s) 883, 1280
BstV2I GAAGAC 2 cut(s) 96, 499
BstX2I RGATCY 3 cut(s) 354, 734, 1317
BstXI CCANNNNNNTGG 1 cut(s) 1314
BstYI RGATCY 3 cut(s) 354, 734, 1317
BstZ17I GTATAC 1 cut(s) 1082
BsuI GTATCC 2 cut(s) 367, 1053
BsuRI GGCC 2 cut(s) 543, 587
BtsCI GGATG 2 cut(s) 1290, 1501
BtsIMutI CAGTG 2 cut(s) 202, 831
Cac8I GCNNGC 4 cut(s) 55, 138, 292, 901
CaiI CAGNNNCTG 1 cut(s) 737
CfoI GCGC 2 cut(s) 136, 552
Cfr10I RCCGGY 1 cut(s) 290
Cfr13I GGNCC 2 cut(s) 621, 851
Csp6I GTAC 2 cut(s) 1234, 1330
CviAII CATG 7 cut(s) 413, 493, 503, 589, 1051, 1508, 1522
CviQI GTAC 2 cut(s) 1234, 1330
DdeI CTNAG 3 cut(s) 194, 329, 407
DpnI GATC 5 cut(s) 356, 736, 912, 1179, 1319
DpnII GATC 5 cut(s) 354, 734, 910, 1177, 1317
DraI TTTAAA 2 cut(s) 1197, 1324
DraIII CACNNNGTG 1 cut(s) 197
EaeI YGGCCR 1 cut(s) 585
Eam1104I CTCTTC 1 cut(s) 570
EarI CTCTTC 1 cut(s) 570
EciI GGCGGA 2 cut(s) 266, 1400
Eco147I AGGCCT 1 cut(s) 543
Eco47I GGWCC 2 cut(s) 621, 851
Eco57I CTGAAG 4 cut(s) 98, 335, 381, 939
Eco88I CYCGRG 1 cut(s) 624
EcoO109I RGGNCCY 1 cut(s) 851
EcoRI GAATTC 2 cut(s) 973, 1451
EcoRII CCWGG 2 cut(s) 730, 1054
EcoT22I ATGCAT 1 cut(s) 1174
FaeI CATG 7 cut(s) 416, 496, 506, 592, 1054, 1511, 1525
FalI AAGNNNNNCTT 4 cut(s) 491, 523, 857, 889
FatI CATG 7 cut(s) 412, 492, 502, 588, 1050, 1507, 1521
FauI CCCGC 1 cut(s) 1461
FblI GTMKAC 1 cut(s) 1081
Fnu4HI GCNGC 3 cut(s) 288, 897, 1269
FokI GGATG 2 cut(s) 1277, 1508
Fsp4HI GCNGC 3 cut(s) 288, 897, 1269
FspBI CTAG 2 cut(s) 768, 1107
GlaI GCGC 2 cut(s) 135, 551
GluI GCNGC 3 cut(s) 288, 897, 1269
GsuI CTGGAG 1 cut(s) 714
HaeIII GGCC 2 cut(s) 543, 587
HapII CCGG 1 cut(s) 291
HhaI GCGC 2 cut(s) 136, 552
Hin1I GRCGYC 2 cut(s) 188, 300
Hin1II CATG 7 cut(s) 416, 496, 506, 592, 1054, 1511, 1525
Hin6I GCGC 2 cut(s) 134, 550
HinP1I GCGC 2 cut(s) 134, 550
HinfI GANTC 6 cut(s) 24, 170, 246, 564, 1361, 1472
HpaII CCGG 1 cut(s) 291
HphI GGTGA 3 cut(s) 195, 976, 1109
Hpy166II GTNNAC 2 cut(s) 1033, 1082
Hpy188I TCNGA 5 cut(s) 78, 361, 760, 958, 1177
Hpy188III TCNNGA 7 cut(s) 113, 313, 568, 635, 654, 749, 1124
Hpy8I GTNNAC 2 cut(s) 1033, 1082
Hpy99I CGWCG 4 cut(s) 145, 299, 302, 305
HpyAV CCTTC 2 cut(s) 938, 1007
HpyCH4III ACNGT 2 cut(s) 37, 379
HpyCH4IV ACGT 3 cut(s) 188, 300, 1204
HpyF10VI GCNNNNNNNGC 3 cut(s) 549, 701, 1274
HpyF3I CTNAG 3 cut(s) 194, 329, 407
HpySE526I ACGT 3 cut(s) 188, 300, 1204
Hsp92I GRCGYC 2 cut(s) 188, 300
Hsp92II CATG 7 cut(s) 416, 496, 506, 592, 1054, 1511, 1525
HspAI GCGC 2 cut(s) 134, 550
KroI GCCGGC 1 cut(s) 290
KroNI GCCGGC 1 cut(s) 292
Kzo9I GATC 5 cut(s) 354, 734, 910, 1177, 1317
LguI GCTCTTC 1 cut(s) 570
LmnI GCTCC 3 cut(s) 800, 1072, 1387
Lsp1109I GCAGC 2 cut(s) 883, 1280
LweI GCATC 4 cut(s) 996, 1117, 1181, 1455
MaeI CTAG 2 cut(s) 768, 1107
MaeII ACGT 3 cut(s) 188, 300, 1204
MaeIII GTNAC 3 cut(s) 31, 184, 189
MalI GATC 5 cut(s) 356, 736, 912, 1179, 1319
MboI GATC 5 cut(s) 354, 734, 910, 1177, 1317
MboII GAAGA 5 cut(s) 101, 374, 499, 587, 1454
MfeI CAATTG 1 cut(s) 581
MflI RGATCY 3 cut(s) 354, 734, 1317
MhlI GDGCHC 1 cut(s) 1279
MlsI TGGCCA 1 cut(s) 587
MluNI TGGCCA 1 cut(s) 587
MlyI GAGTC 1 cut(s) 33
Mox20I TGGCCA 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 1174
MreI CGCCGGCG 1 cut(s) 290
MroNI GCCGGC 1 cut(s) 290
MroXI GAANNNNTTC 1 cut(s) 1365
MscI TGGCCA 1 cut(s) 587
MseI TTAA 8 cut(s) 11, 227, 456, 689, 786, 1143, 1196, 1323
Msp20I TGGCCA 1 cut(s) 587
MspI CCGG 1 cut(s) 291
MspR9I CCNGG 2 cut(s) 732, 1056
MunI CAATTG 1 cut(s) 581
MvaI CCWGG 2 cut(s) 732, 1056
MvnI CGCG 2 cut(s) 136, 861
MwoI GCNNNNNNNGC 3 cut(s) 549, 701, 1274
NaeI GCCGGC 1 cut(s) 292
NdeII GATC 5 cut(s) 354, 734, 910, 1177, 1317
NgoMIV GCCGGC 1 cut(s) 290
NlaIII CATG 7 cut(s) 416, 496, 506, 592, 1054, 1511, 1525
NlaIV GGNNCC 1 cut(s) 623
NmuCI GTSAC 2 cut(s) 184, 189
NsiI ATGCAT 1 cut(s) 1174
NspI RCATGY 2 cut(s) 506, 1054
PceI AGGCCT 1 cut(s) 543
PciSI GCTCTTC 1 cut(s) 570
PdiI GCCGGC 1 cut(s) 292
PdmI GAANNNNTTC 1 cut(s) 1365
PfeI GAWTC 5 cut(s) 170, 246, 564, 1361, 1472
PflFI GACNNNGTC 1 cut(s) 299
PflMI CCANNNNNTGG 1 cut(s) 1076
PfoI TCCNGGA 1 cut(s) 730
PkrI GCNGC 3 cut(s) 289, 898, 1270
PleI GAGTC 1 cut(s) 32
PpsI GAGTC 1 cut(s) 32
PpuMI RGGWCCY 1 cut(s) 851
Psp1406I AACGTT 1 cut(s) 1204
Psp5II RGGWCCY 1 cut(s) 851
Psp6I CCWGG 2 cut(s) 730, 1054
PspGI CCWGG 2 cut(s) 730, 1054
PspN4I GGNNCC 1 cut(s) 623
PspPI GGNCC 2 cut(s) 621, 851
PspPPI RGGWCCY 1 cut(s) 851
PstNI CAGNNNCTG 1 cut(s) 737
PsuI RGATCY 3 cut(s) 354, 734, 1317
PsyI GACNNNGTC 1 cut(s) 299
RsaI GTAC 2 cut(s) 1235, 1331
RsaNI GTAC 2 cut(s) 1234, 1330
SapI GCTCTTC 1 cut(s) 570
SaqAI TTAA 8 cut(s) 11, 227, 456, 689, 786, 1143, 1196, 1323
SatI GCNGC 3 cut(s) 288, 897, 1269
Sau3AI GATC 5 cut(s) 354, 734, 910, 1177, 1317
Sau96I GGNCC 2 cut(s) 621, 851
SchI GAGTC 1 cut(s) 33
ScrFI CCNGG 2 cut(s) 732, 1056
SduI GDGCHC 1 cut(s) 1279
SfaNI GCATC 4 cut(s) 996, 1117, 1181, 1455
SgrAI CRCCGGYG 1 cut(s) 290
SinI GGWCC 2 cut(s) 621, 851
SmlI CTYRAG 2 cut(s) 914, 1122
SmoI CTYRAG 2 cut(s) 914, 1122
SseBI AGGCCT 1 cut(s) 543
SsiI CCGC 6 cut(s) 277, 288, 338, 859, 1385, 1468
SspMI CTAG 2 cut(s) 768, 1107
StuI AGGCCT 1 cut(s) 543
StyD4I CCNGG 2 cut(s) 730, 1054
TaaI ACNGT 2 cut(s) 37, 379
TaiI ACGT 3 cut(s) 191, 303, 1207
TaqI TCGA 5 cut(s) 22, 112, 562, 710, 1475
TauI GCSGC 1 cut(s) 290
TfiI GAWTC 5 cut(s) 170, 246, 564, 1361, 1472
Tru1I TTAA 8 cut(s) 11, 227, 456, 689, 786, 1143, 1196, 1323
Tru9I TTAA 8 cut(s) 11, 227, 456, 689, 786, 1143, 1196, 1323
TscAI CASTG 2 cut(s) 202, 831
TseFI GTSAC 2 cut(s) 184, 189
TseI GCWGC 2 cut(s) 896, 1268
Tsp45I GTSAC 2 cut(s) 184, 189
TspDTI ATGAA 8 cut(s) 17, 243, 381, 462, 483, 589, 1051, 1279
TspGWI ACGGA 5 cut(s) 191, 634, 1112, 1221, 1283
TspRI CASTG 2 cut(s) 202, 831
Tth111I GACNNNGTC 1 cut(s) 299
Van91I CCANNNNNTGG 1 cut(s) 1076
VpaK11BI GGWCC 2 cut(s) 621, 851
XapI RAATTY 5 cut(s) 105, 229, 753, 973, 1451
XceI RCATGY 2 cut(s) 506, 1054
XcmI CCANNNNNNNNNTGG 1 cut(s) 1351
XmiI GTMKAC 1 cut(s) 1081
XmnI GAANNNNTTC 1 cut(s) 1365
XspI CTAG 2 cut(s) 768, 1107
ZraI GACGTC 2 cut(s) 189, 301
Zsp2I ATGCAT 1 cut(s) 1174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.