Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0006438

Physical Location & Seq

Genomic Coordinates Forward (+)

31692118 .. 31696049

Gene Structure 3932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1237100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

ATGGATAAGCATGTCTTCTACAAGTTGTGTGATATTTTGCAAGGAAAAGGCCTACTGCGCCACACAAATCGAATCAAGATTGAAGAGCAATTGGCCATGTTCTTGTTCATAATTGGTCATAATCTACGGACTCGAGCTGTTCAAGAGTTATTCCGTTATTCCGGAGAAACCATCAGTCGTCATTTCAACAATGTCTTAAACGCAGTAATGGCAATTTCGTTAGGTTTCTTTCAGCCTCCAGGATCTGATGTTCCTCCCGAAATTTCAGAAAATCCTAGATTCTATCCATATTTTAAGGATTGTGTGGGAGCAGTTGATGGCATACACTTCCCGGTGATGGTGGGGGTAGATGAGCAAGGACCTTTCCGCGACAAGAATGGCTTACTTTCACAAAATGTTCTGGCTGCTTGCTCATTTGATCTCAAGTTCCTTTATGTCTTGGCTGGTTGGGAAGGCTCTGCTTCAGATTTGCAAGTTTTGAATTCTGCTCTCACCAGACGAAACAAATTGCAGATGCCAGAAGGCAAATACTACCTCGTGGACACCAAGTATCCAAACATGCCTGGCTTCATTGCTCCGTATCCTGGTATACCTTATCACTCAACGGAGTTTCCTAGTGGTTATCACCCTCAAGATGCAAAAGAGCTATTTAATCAGCGACACTCAGTATTACGAAATGCATCTGATCGCACTTTTGGGGCTTTAAAAGAACGCTTCCCTATATTGATGTCAGCCCCTCCGTACCCATTACAAACACAAGTCAAATTGGTTGTGGCAGCTTGTGCCCTACACAACTTCATCCGTGAGGAGAAACCAGATGACTGGATCTTTAAAATGTACGAAAAGGACACCATACTGCAAATGGAGGAATCAATTCCCCCGTTAGGGGAGGTGGAGCAACCAATCATGCATTTTGAAGCCTCTGCTTTGGACATTGCTTTTGAAACCGAAGAACTGGAATTCACTTCGCAGACGCGGGATTCGATTGCAAGTGAAATGTGGGATGACTATATCCATGATTTATCTCCCATGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

345

Amino Acids

39.34

Weight (kDa)

5.32

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	1 - 70	3.1e-27	Domain of unknown function (DUF8040)
Plant_tran	PF04827	100 - 271	3.2e-08	Plant transposon protein
DDE_Tnp_4	PF13359	105 - 265	2.5e-19	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41980
fragaria_vesca	FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911
malus_domestica	MD00G1159500.v1.1 MD06G1227900.v1.1 MD14G1237100.v1.1
prunus_persica	Prupe.5G234400_v2.0.a1 Prupe.7G000100_v2.0.a1
pyrus_communis	pycom06g20420 pycom06g20430 pycom12g00010 pycom14g19810
rosa_chinensis	RchiOBHm_Chr1g0313091 RchiOBHm_Chr6g0248041
rosa_multiflora	Rmu_sc0001606.1_g000006 Rmu_sc0030940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332540
rosa_samantha	Rh1CG001900 Rh1CG005100 Rh6BG040400
rosa_wichuraiana	Rw0G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	589
AccII	CGCG	2 cut(s)	369, 976
AccIII	TCCGGA	1 cut(s)	161
AciI	CCGC	2 cut(s)	367, 976
AclWI	GGATC	2 cut(s)	250, 833
AcoI	YGGCCR	1 cut(s)	93
AcsI	RAATTY	3 cut(s)	261, 481, 959
AcuI	CTGAAG	1 cut(s)	447
AfaI	GTAC	2 cut(s)	743, 839
AfiI	CCNNNNNNNGG	5 cut(s)	337, 584, 884, 885, 886
AgsI	TTSAA	6 cut(s)	83, 143, 187, 481, 917, 944
AjnI	CCWGG	3 cut(s)	238, 562, 583
AloI	GAACNNNNNNTCC	2 cut(s)	234, 266
AluBI	AGCT	3 cut(s)	137, 646, 779
AluI	AGCT	3 cut(s)	137, 646, 779
AlwI	GGATC	2 cut(s)	250, 833
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	132
Aor13HI	TCCGGA	1 cut(s)	161
AoxI	GGCC	2 cut(s)	49, 93
ApeKI	GCWGC	2 cut(s)	404, 776
ApoI	RAATTY	3 cut(s)	261, 481, 959
ArsI	GACNNNNNNTTYG	4 cut(s)	923, 955, 964, 996
Asp700I	GAANNNNTTC	1 cut(s)	873
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	359
AsuC2I	CCSGG	1 cut(s)	332
AsuHPI	GGTGA	3 cut(s)	346, 484, 617
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	1 cut(s)	359
BaeGI	GKGCMC	1 cut(s)	787
BalI	TGGCCA	1 cut(s)	95
BauI	CACGAG	1 cut(s)	536
BbsI	GAAGAC	1 cut(s)	7
BbvI	GCAGC	2 cut(s)	391, 788
BccI	CCATC	3 cut(s)	179, 311, 331
BciT130I	CCWGG	3 cut(s)	240, 564, 585
BciVI	GTATCC	2 cut(s)	561, 591
BcnI	CCSGG	1 cut(s)	332
BfaI	CTAG	2 cut(s)	276, 615
BfuI	GTATCC	2 cut(s)	561, 591
BisI	GCNGC	2 cut(s)	405, 777
BlsI	GCNGC	2 cut(s)	406, 778
Bme1390I	CCNGG	4 cut(s)	240, 332, 564, 585
Bme18I	GGWCC	1 cut(s)	359
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	1 cut(s)	359
BmrFI	CCNGG	4 cut(s)	240, 332, 564, 585
BmsI	GCATC	3 cut(s)	504, 625, 689
BpiI	GAAGAC	1 cut(s)	7
BpmI	CTGGAG	1 cut(s)	222
BpuEI	CTTGAG	2 cut(s)	407, 615
BpuMI	CCSGG	1 cut(s)	332
BsaWI	WCCGGW	1 cut(s)	161
Bsc4I	CCNNNNNNNGG	5 cut(s)	337, 584, 884, 885, 886
Bse1I	ACTGG	2 cut(s)	827, 960
Bse3DI	GCAATG	2 cut(s)	570, 933
BseAI	TCCGGA	1 cut(s)	161
BseBI	CCWGG	3 cut(s)	240, 564, 585
BseGI	GGATG	2 cut(s)	798, 1009
BseLI	CCNNNNNNNGG	5 cut(s)	337, 584, 884, 885, 886
BseMI	GCAATG	2 cut(s)	570, 933
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	827, 960
BseRI	GAGGAG	1 cut(s)	821
BseSI	GKGCMC	1 cut(s)	787
BseXI	GCAGC	2 cut(s)	391, 788
Bsh1236I	CGCG	2 cut(s)	369, 976
BshFI	GGCC	2 cut(s)	51, 95
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	2 cut(s)	162, 332
BslI	CCNNNNNNNGG	5 cut(s)	337, 584, 884, 885, 886
BsnI	GGCC	2 cut(s)	51, 95
BsoBI	CYCGRG	1 cut(s)	132
Bsp1286I	GDGCHC	1 cut(s)	787
Bsp13I	TCCGGA	1 cut(s)	161
Bsp143I	GATC	4 cut(s)	242, 418, 685, 825
BspACI	CCGC	2 cut(s)	367, 976
BspANI	GGCC	2 cut(s)	51, 95
BspCNI	CTCAG	1 cut(s)	677
BspEI	TCCGGA	1 cut(s)	161
BspFNI	CGCG	2 cut(s)	369, 976
BspPI	GGATC	2 cut(s)	250, 833
BspQI	GCTCTTC	1 cut(s)	78
BsrDI	GCAATG	2 cut(s)	570, 933
BsrI	ACTGG	2 cut(s)	827, 960
BssMI	GATC	4 cut(s)	242, 418, 685, 825
BssNAI	GTATAC	1 cut(s)	590
BssSI	CACGAG	1 cut(s)	536
Bst1107I	GTATAC	1 cut(s)	590
Bst2BI	CACGAG	1 cut(s)	536
Bst2UI	CCWGG	3 cut(s)	240, 564, 585
Bst6I	CTCTTC	1 cut(s)	78
BstAPI	GCANNNNNTGC	1 cut(s)	782
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	664
BstF5I	GGATG	2 cut(s)	798, 1009
BstFNI	CGCG	2 cut(s)	369, 976
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	4 cut(s)	245, 421, 688, 828
BstMBI	GATC	4 cut(s)	242, 418, 685, 825
BstMWI	GCNNNNNNNGC	3 cut(s)	57, 209, 782
BstNI	CCWGG	3 cut(s)	240, 564, 585
BstNSI	RCATGY	2 cut(s)	14, 562
BstSCI	CCNGG	4 cut(s)	238, 330, 562, 583
BstSLI	GKGCMC	1 cut(s)	787
BstUI	CGCG	2 cut(s)	369, 976
BstV1I	GCAGC	2 cut(s)	391, 788
BstV2I	GAAGAC	1 cut(s)	7
BstX2I	RGATCY	2 cut(s)	242, 825
BstXI	CCANNNNNNTGG	1 cut(s)	822
BstYI	RGATCY	2 cut(s)	242, 825
BstZ17I	GTATAC	1 cut(s)	590
BsuI	GTATCC	2 cut(s)	561, 591
BsuRI	GGCC	2 cut(s)	51, 95
BtsCI	GGATG	2 cut(s)	798, 1009
Cac8I	GCNNGC	1 cut(s)	409
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	359
CseI	GACGC	1 cut(s)	982
Csp6I	GTAC	2 cut(s)	742, 838
CviAII	CATG	6 cut(s)	11, 97, 559, 907, 1016, 1030
CviQI	GTAC	2 cut(s)	742, 838
DdeI	CTNAG	1 cut(s)	664
DpnI	GATC	4 cut(s)	244, 420, 687, 827
DpnII	GATC	4 cut(s)	242, 418, 685, 825
DraI	TTTAAA	2 cut(s)	705, 832
EaeI	YGGCCR	1 cut(s)	93
Eam1104I	CTCTTC	1 cut(s)	78
EarI	CTCTTC	1 cut(s)	78
Eco147I	AGGCCT	1 cut(s)	51
Eco47I	GGWCC	1 cut(s)	359
Eco57I	CTGAAG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	132
EcoO109I	RGGNCCY	1 cut(s)	359
EcoRI	GAATTC	2 cut(s)	481, 959
EcoRII	CCWGG	3 cut(s)	238, 562, 583
EcoT22I	ATGCAT	2 cut(s)	682, 912
FaeI	CATG	6 cut(s)	14, 100, 562, 910, 1019, 1033
FalI	AAGNNNNNCTT	3 cut(s)	31, 365, 397
FatI	CATG	6 cut(s)	10, 96, 558, 906, 1015, 1029
FauI	CCCGC	1 cut(s)	969
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	2 cut(s)	405, 777
FokI	GGATG	2 cut(s)	785, 1016
Fsp4HI	GCNGC	2 cut(s)	405, 777
FspBI	CTAG	2 cut(s)	276, 615
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	2 cut(s)	405, 777
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	51, 95
HapII	CCGG	2 cut(s)	162, 332
HgaI	GACGC	1 cut(s)	982
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	6 cut(s)	14, 100, 562, 910, 1019, 1033
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	5 cut(s)	72, 130, 279, 869, 980
HpaII	CCGG	2 cut(s)	162, 332
HphI	GGTGA	3 cut(s)	346, 484, 617
Hpy166II	GTNNAC	2 cut(s)	541, 590
Hpy188I	TCNGA	4 cut(s)	247, 268, 466, 685
Hpy188III	TCNNGA	5 cut(s)	76, 143, 162, 257, 632
Hpy8I	GTNNAC	2 cut(s)	541, 590
HpyAV	CCTTC	2 cut(s)	446, 515
HpyCH4V	TGCA	8 cut(s)	40, 472, 511, 638, 680, 859, 910, 989
HpyF10VI	GCNNNNNNNGC	3 cut(s)	57, 209, 782
HpyF3I	CTNAG	1 cut(s)	664
Hsp92II	CATG	6 cut(s)	14, 100, 562, 910, 1019, 1033
HspAI	GCGC	1 cut(s)	58
Kpn2I	TCCGGA	1 cut(s)	161
Kzo9I	GATC	4 cut(s)	242, 418, 685, 825
LguI	GCTCTTC	1 cut(s)	78
LmnI	GCTCC	3 cut(s)	308, 580, 895
Lsp1109I	GCAGC	2 cut(s)	391, 788
LweI	GCATC	3 cut(s)	504, 625, 689
MaeI	CTAG	2 cut(s)	276, 615
MalI	GATC	4 cut(s)	244, 420, 687, 827
MboI	GATC	4 cut(s)	242, 418, 685, 825
MboII	GAAGA	3 cut(s)	7, 95, 962
MfeI	CAATTG	1 cut(s)	89
MflI	RGATCY	2 cut(s)	242, 825
MhlI	GDGCHC	1 cut(s)	787
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	9 cut(s)	89, 111, 213, 261, 481, 506, 764, 873, 959
MluNI	TGGCCA	1 cut(s)	95
MlyI	GAGTC	1 cut(s)	124
MnlI	CCTC	9 cut(s)	246, 264, 545, 639, 747, 799, 859, 883, 931
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	2 cut(s)	682, 912
MroI	TCCGGA	1 cut(s)	161
MroXI	GAANNNNTTC	1 cut(s)	873
MscI	TGGCCA	1 cut(s)	95
MseI	TTAA	5 cut(s)	197, 294, 651, 704, 831
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	2 cut(s)	162, 332
MspR9I	CCNGG	4 cut(s)	240, 332, 564, 585
MunI	CAATTG	1 cut(s)	89
MvaI	CCWGG	3 cut(s)	240, 564, 585
MvnI	CGCG	2 cut(s)	369, 976
MwoI	GCNNNNNNNGC	3 cut(s)	57, 209, 782
NciI	CCSGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	242, 418, 685, 825
NlaIII	CATG	6 cut(s)	14, 100, 562, 910, 1019, 1033
NsiI	ATGCAT	2 cut(s)	682, 912
NspI	RCATGY	2 cut(s)	14, 562
PaeR7I	CTCGAG	1 cut(s)	132
PceI	AGGCCT	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	78
PcsI	WCGNNNNNNNCGW	1 cut(s)	980
PdmI	GAANNNNTTC	1 cut(s)	873
PfeI	GAWTC	4 cut(s)	72, 279, 869, 980
PfoI	TCCNGGA	1 cut(s)	238
PkrI	GCNGC	2 cut(s)	406, 778
PleI	GAGTC	1 cut(s)	124
PpsI	GAGTC	1 cut(s)	124
PpuMI	RGGWCCY	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	359
Psp6I	CCWGG	3 cut(s)	238, 562, 583
PspGI	CCWGG	3 cut(s)	238, 562, 583
PspPI	GGNCC	1 cut(s)	359
PspPPI	RGGWCCY	1 cut(s)	359
PspXI	VCTCGAGB	1 cut(s)	132
PstNI	CAGNNNCTG	1 cut(s)	245
PsuI	RGATCY	2 cut(s)	242, 825
RsaI	GTAC	2 cut(s)	743, 839
RsaNI	GTAC	2 cut(s)	742, 838
SapI	GCTCTTC	1 cut(s)	78
SaqAI	TTAA	5 cut(s)	197, 294, 651, 704, 831
SatI	GCNGC	2 cut(s)	405, 777
Sau3AI	GATC	4 cut(s)	242, 418, 685, 825
Sau96I	GGNCC	1 cut(s)	359
SchI	GAGTC	1 cut(s)	124
ScrFI	CCNGG	4 cut(s)	240, 332, 564, 585
SduI	GDGCHC	1 cut(s)	787
SetI	ASST	8 cut(s)	139, 226, 364, 537, 595, 648, 781, 894
SfaNI	GCATC	3 cut(s)	504, 625, 689
Sfr274I	CTCGAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	359
SlaI	CTCGAG	1 cut(s)	132
SmlI	CTYRAG	3 cut(s)	132, 422, 630
SmoI	CTYRAG	3 cut(s)	132, 422, 630
Sse9I	AATT	9 cut(s)	89, 111, 213, 261, 481, 506, 764, 873, 959
SseBI	AGGCCT	1 cut(s)	51
SsiI	CCGC	2 cut(s)	367, 976
SspMI	CTAG	2 cut(s)	276, 615
StuI	AGGCCT	1 cut(s)	51
StyD4I	CCNGG	4 cut(s)	238, 330, 562, 583
TaqI	TCGA	3 cut(s)	70, 133, 983
TasI	AATT	9 cut(s)	89, 111, 213, 261, 481, 506, 764, 873, 959
TfiI	GAWTC	4 cut(s)	72, 279, 869, 980
Tru1I	TTAA	5 cut(s)	197, 294, 651, 704, 831
Tru9I	TTAA	5 cut(s)	197, 294, 651, 704, 831
TseI	GCWGC	2 cut(s)	404, 776
TspDTI	ATGAA	3 cut(s)	97, 559, 787
TspGWI	ACGGA	6 cut(s)	142, 143, 567, 620, 729, 791
VpaK11BI	GGWCC	1 cut(s)	359
XapI	RAATTY	3 cut(s)	261, 481, 959
XceI	RCATGY	2 cut(s)	14, 562
XcmI	CCANNNNNNNNNTGG	1 cut(s)	859
XhoI	CTCGAG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	1 cut(s)	873
XspI	CTAG	2 cut(s)	276, 615
Zsp2I	ATGCAT	2 cut(s)	682, 912

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.