Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0006438

Physical Location & Seq

Genomic Coordinates Reverse (-)

35255514 .. 35260173

Gene Structure 4660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1159500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGGATACATCAGCTGTCATGGATGATTTTGACGTAGAATTGGAAGAGATGGAACTAACTGCAGCAGCTGCTGGTTACTATTATTATAACAGTATTACCAGGCAACCTTGTCGTGGTCTGTCACCTAGTAAAGCATGTGGATTTATGACCGAAGTCCTGAGTGGTCATGATGATGTGTTCCAGGAAATGTTTCGGATGGATAAACATGTGTTTCACAAGTTATGTGACGTTCTCCGGCAAAGAGGAATGCTACGTGATACTGCTGGTGTTATGATAGAGGAGCAGCTGGGAATCTTTTTGAATATTATTGGCCATAATGAACGCAACAGAGTTATCCAAGAGCGATTTCATCATTCAGGTGAAACCATCAGCCGTCATTTCAATAATGTGTTGAAGGCAGTCAAGTCACTGTCACGTGAATTTCTACAAACACCAACCCCCACCAGACCTTCAGAAATCCGTGGATGCATTAGATTTTATCCATATTTCCAGGATTGTCTCGGAGTCATTGGTGGAATGCACATTCCAGCCCATGTCCCAGCCAAAGATCAATCCCGGTTTCGAAATAAGAAAGGTGTTCTTTCACAAAATGTGTTGGCAGCTTGCACGTTTGACCTTCAGTTTATATTCATTTATCCTGGCTGGGAAGGCTCAGCTGCAGGAGCCCGTGTGTTGAAAGCAGTCCTTGATGATCCGCATCAGAATTTCCCTCGTATTCCTGAAGGAAAATATTACCTTGTCGACACAGGATATGCAAATATGAAAGGCTTTATTGCCCCATTTCAAGGCGTCAGGTATCATGCTAATGAATATAGAGGTGCAAATCAGTTACCTAGAAATGCAAGGGAGCTATTTAATCACAGGCACTCATCTCTTAGCAATGTCATCCAGAGATCTTTTTATTTGTTGAAGACTAGGTTTCCGATACTCAAACTTGCTCCTCAATACGCATTTCATATTCAAAGGGATATAGTTATAGCTGCGTGTGTTCTGCACAATTACATCCGGCGTATGTCAAAAAAGGATTGGCTGTTTTCGAGTGCGGAAGGGACAACAATGGATGAATTGCCTGATCTCGATGATAATCTTGACACAGAGTTACTTACTTCGATACAAGAACATGTTGCTTTATCAGTGAGAGAGTCAATTGCCACAGAAATGTGGGATGACTTTATAAATAAATGGGATCAATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4

Protein Analysis

399

Amino Acids

45.86

Weight (kDa)

6.6

Isoelectric Point (pI)

49.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF8040	PF26138	48 - 135	1.5e-36	Domain of unknown function (DUF8040)
DDE_Tnp_4	PF13359	171 - 333	1e-18	DDE superfamily endonuclease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006438)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G41980
fragaria_vesca	FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911 FvH4_4g05911
malus_domestica	MD00G1159500.v1.1 MD06G1227900.v1.1 MD14G1237100.v1.1
prunus_persica	Prupe.5G234400_v2.0.a1 Prupe.7G000100_v2.0.a1
pyrus_communis	pycom06g20420 pycom06g20430 pycom12g00010 pycom14g19810
rosa_chinensis	RchiOBHm_Chr1g0313091 RchiOBHm_Chr6g0248041
rosa_multiflora	Rmu_sc0001606.1_g000006 Rmu_sc0030940.1_g000001
rosa_roxburghii	Rroxscaffold_4G00332540
rosa_samantha	Rh1CG001900 Rh1CG005100 Rh6BG040400
rosa_wichuraiana	Rw0G008470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	87, 1175
AccI	GTMKAC	1 cut(s)	741
AciI	CCGC	2 cut(s)	695, 1043
AclWI	GGATC	2 cut(s)	686, 1194
AcoI	YGGCCR	1 cut(s)	310
AcsI	RAATTY	2 cut(s)	419, 703
AcuI	CTGAAG	3 cut(s)	435, 602, 741
AcvI	CACGTG	1 cut(s)	416
AcyI	GRCGYC	1 cut(s)	789
AfiI	CCNNNNNNNGG	2 cut(s)	113, 785
AflIII	ACRYGT	2 cut(s)	205, 1120
AgsI	TTSAA	7 cut(s)	301, 382, 394, 676, 785, 910, 962
AjnI	CCWGG	4 cut(s)	98, 180, 489, 637
AjuI	GAANNNNNNNTTGG	2 cut(s)	330, 362
AluBI	AGCT	7 cut(s)	14, 68, 286, 602, 656, 850, 980
AluI	AGCT	7 cut(s)	14, 68, 286, 602, 656, 850, 980
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	2 cut(s)	686, 1194
AlwNI	CAGNNNCTG	2 cut(s)	68, 71
AoxI	GGCC	1 cut(s)	310
ApeKI	GCWGC	7 cut(s)	62, 65, 68, 283, 599, 656, 980
ApoI	RAATTY	2 cut(s)	419, 703
Asp700I	GAANNNNTTC	1 cut(s)	189
AsuC2I	CCSGG	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	114, 371
AsuII	TTCGAA	1 cut(s)	562
BalI	TGGCCA	1 cut(s)	312
BanII	GRGCYC	1 cut(s)	667
BbrPI	CACGTG	1 cut(s)	416
BbsI	GAAGAC	1 cut(s)	917
BbvI	GCAGC	7 cut(s)	55, 74, 77, 295, 611, 643, 967
BccI	CCATC	3 cut(s)	43, 190, 374
BceAI	ACGGC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	92, 126
BciT130I	CCWGG	4 cut(s)	100, 182, 491, 639
BcnI	CCSGG	1 cut(s)	556
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	3 cut(s)	126, 834, 915
BfmI	CTRYAG	2 cut(s)	60, 657
BglII	AGATCT	1 cut(s)	893
BisI	GCNGC	7 cut(s)	63, 66, 69, 284, 600, 657, 981
BlpI	GCTNAGC	1 cut(s)	652
BlsI	GCNGC	7 cut(s)	64, 67, 70, 285, 601, 658, 982
Bme1390I	CCNGG	5 cut(s)	100, 182, 491, 556, 639
BmiI	GGNNCC	1 cut(s)	664
BmrFI	CCNGG	5 cut(s)	100, 182, 491, 556, 639
BmsI	GCATC	2 cut(s)	455, 706
BoxI	GACNNNNGTC	1 cut(s)	152
BpiI	GAAGAC	1 cut(s)	917
Bpu1102I	GCTNAGC	1 cut(s)	652
Bpu14I	TTCGAA	1 cut(s)	562
BpuMI	CCSGG	1 cut(s)	556
BsaAI	YACGTR	2 cut(s)	254, 416
BsaBI	GATNNNNATC	2 cut(s)	696, 1083
BsaHI	GRCGYC	1 cut(s)	789
BsaJI	CCNNGG	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	654, 684
Bsc4I	CCNNNNNNNGG	2 cut(s)	113, 785
Bse3DI	GCAATG	1 cut(s)	886
Bse8I	GATNNNNATC	2 cut(s)	696, 1083
BseBI	CCWGG	4 cut(s)	100, 182, 491, 639
BseDI	CCNNGG	1 cut(s)	460
BseGI	GGATG	7 cut(s)	28, 201, 470, 885, 1002, 1066, 1171
BseJI	GATNNNNATC	2 cut(s)	696, 1083
BseLI	CCNNNNNNNGG	2 cut(s)	113, 785
BseMI	GCAATG	1 cut(s)	886
BseMII	CTCAG	2 cut(s)	149, 666
BseRI	GAGGAG	2 cut(s)	293, 930
BseXI	GCAGC	7 cut(s)	55, 74, 77, 295, 611, 643, 967
BseYI	CCCAGC	3 cut(s)	286, 538, 642
BsgI	GTGCAG	1 cut(s)	977
BshFI	GGCC	1 cut(s)	312
BsiSI	CCGG	3 cut(s)	235, 556, 1006
BslFI	GGGAC	2 cut(s)	521, 1063
BslI	CCNNNNNNNGG	2 cut(s)	113, 785
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	521, 1063
BsmI	GAATGC	2 cut(s)	252, 522
BsnI	GGCC	1 cut(s)	312
Bsp119I	TTCGAA	1 cut(s)	562
Bsp1286I	GDGCHC	1 cut(s)	667
Bsp143I	GATC	5 cut(s)	547, 691, 893, 1072, 1186
Bsp1720I	GCTNAGC	1 cut(s)	652
BspACI	CCGC	2 cut(s)	695, 1043
BspANI	GGCC	1 cut(s)	312
BspCNI	CTCAG	2 cut(s)	150, 665
BspHI	TCATGA	1 cut(s)	166
BspLI	GGNNCC	1 cut(s)	664
BspMAI	CTGCAG	2 cut(s)	64, 661
BspPI	GGATC	2 cut(s)	686, 1194
BspT104I	TTCGAA	1 cut(s)	562
BsrDI	GCAATG	1 cut(s)	886
BssECI	CCNNGG	1 cut(s)	460
BssMI	GATC	5 cut(s)	547, 691, 893, 1072, 1186
BssNI	GRCGYC	1 cut(s)	789
Bst2UI	CCWGG	4 cut(s)	100, 182, 491, 639
Bst4CI	ACNGT	2 cut(s)	92, 411
Bst6I	CTCTTC	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	789
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstBAI	YACGTR	2 cut(s)	254, 416
BstBI	TTCGAA	1 cut(s)	562
BstC8I	GCNNGC	1 cut(s)	604
BstDEI	CTNAG	3 cut(s)	158, 652, 875
BstDSI	CCRYGG	1 cut(s)	460
BstF5I	GGATG	7 cut(s)	28, 201, 470, 885, 1002, 1066, 1171
BstKTI	GATC	5 cut(s)	550, 694, 896, 1075, 1189
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	5 cut(s)	547, 691, 893, 1072, 1186
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 648, 662
BstNI	CCWGG	4 cut(s)	100, 182, 491, 639
BstNSI	RCATGY	3 cut(s)	138, 209, 1124
BstPAI	GACNNNNGTC	1 cut(s)	152
BstSCI	CCNGG	5 cut(s)	98, 180, 489, 554, 637
BstSFI	CTRYAG	2 cut(s)	60, 657
BstV1I	GCAGC	7 cut(s)	55, 74, 77, 295, 611, 643, 967
BstV2I	GAAGAC	1 cut(s)	917
BstX2I	RGATCY	1 cut(s)	893
BstYI	RGATCY	1 cut(s)	893
BsuRI	GGCC	1 cut(s)	312
BtgI	CCRYGG	1 cut(s)	460
BtsCI	GGATG	7 cut(s)	28, 201, 470, 885, 1002, 1066, 1171
BtsIMutI	CAGTG	2 cut(s)	407, 1140
Cac8I	GCNNGC	1 cut(s)	604
CaiI	CAGNNNCTG	2 cut(s)	68, 71
CciI	TCATGA	1 cut(s)	166
CseI	GACGC	1 cut(s)	778
CviAII	CATG	7 cut(s)	19, 135, 167, 206, 533, 800, 1121
DdeI	CTNAG	3 cut(s)	158, 652, 875
DpnI	GATC	5 cut(s)	549, 693, 895, 1074, 1188
DpnII	GATC	5 cut(s)	547, 691, 893, 1072, 1186
EaeI	YGGCCR	1 cut(s)	310
Eam1104I	CTCTTC	1 cut(s)	39
EarI	CTCTTC	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	667
Eco57I	CTGAAG	3 cut(s)	435, 602, 741
Eco72I	CACGTG	1 cut(s)	416
EcoRII	CCWGG	4 cut(s)	98, 180, 489, 637
EcoT22I	ATGCAT	1 cut(s)	470
EcoT38I	GRGCYC	1 cut(s)	667
FaeI	CATG	7 cut(s)	22, 138, 170, 209, 536, 803, 1124
FalI	AAGNNNNNCTT	4 cut(s)	564, 596, 669, 701
FaqI	GGGAC	2 cut(s)	521, 1063
FatI	CATG	7 cut(s)	18, 134, 166, 205, 532, 799, 1120
FblI	GTMKAC	1 cut(s)	741
Fnu4HI	GCNGC	7 cut(s)	63, 66, 69, 284, 600, 657, 981
FokI	GGATG	7 cut(s)	35, 208, 477, 872, 989, 1073, 1178
FriOI	GRGCYC	1 cut(s)	667
Fsp4HI	GCNGC	7 cut(s)	63, 66, 69, 284, 600, 657, 981
FspBI	CTAG	3 cut(s)	126, 834, 915
GluI	GCNGC	7 cut(s)	63, 66, 69, 284, 600, 657, 981
GsaI	CCCAGC	3 cut(s)	290, 542, 646
HaeIII	GGCC	1 cut(s)	312
HapII	CCGG	3 cut(s)	235, 556, 1006
HgaI	GACGC	1 cut(s)	778
Hin1I	GRCGYC	1 cut(s)	789
Hin1II	CATG	7 cut(s)	22, 138, 170, 209, 536, 803, 1124
HincII	GTYRAC	1 cut(s)	742
HindII	GTYRAC	1 cut(s)	742
HinfI	GANTC	3 cut(s)	291, 504, 1142
HpaII	CCGG	3 cut(s)	235, 556, 1006
HphI	GGTGA	2 cut(s)	114, 371
Hpy166II	GTNNAC	1 cut(s)	742
Hpy188I	TCNGA	5 cut(s)	195, 454, 503, 702, 924
Hpy188III	TCNNGA	6 cut(s)	157, 167, 719, 889, 1076, 1088
Hpy8I	GTNNAC	1 cut(s)	742
HpyAV	CCTTC	6 cut(s)	388, 459, 626, 641, 716, 1040
HpyCH4III	ACNGT	2 cut(s)	92, 411
HpyCH4IV	ACGT	5 cut(s)	33, 228, 253, 415, 608
HpyCH4V	TGCA	9 cut(s)	62, 468, 520, 606, 659, 755, 821, 842, 994
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 648, 662
HpyF3I	CTNAG	3 cut(s)	158, 652, 875
HpySE526I	ACGT	5 cut(s)	33, 228, 253, 415, 608
Hsp92I	GRCGYC	1 cut(s)	789
Hsp92II	CATG	7 cut(s)	22, 138, 170, 209, 536, 803, 1124
Kzo9I	GATC	5 cut(s)	547, 691, 893, 1072, 1186
LmnI	GCTCC	4 cut(s)	280, 662, 847, 943
Lsp1109I	GCAGC	7 cut(s)	55, 74, 77, 295, 611, 643, 967
LweI	GCATC	2 cut(s)	455, 706
MaeI	CTAG	3 cut(s)	126, 834, 915
MaeII	ACGT	5 cut(s)	33, 228, 253, 415, 608
MaeIII	GTNAC	7 cut(s)	74, 120, 224, 405, 411, 828, 1098
MalI	GATC	5 cut(s)	549, 693, 895, 1074, 1188
MboI	GATC	5 cut(s)	547, 691, 893, 1072, 1186
MboII	GAAGA	2 cut(s)	56, 922
MfeI	CAATTG	1 cut(s)	1146
MflI	RGATCY	1 cut(s)	893
MhlI	GDGCHC	1 cut(s)	667
MlsI	TGGCCA	1 cut(s)	312
MluCI	AATT	6 cut(s)	38, 419, 703, 997, 1064, 1146
MluNI	TGGCCA	1 cut(s)	312
MlyI	GAGTC	2 cut(s)	513, 1151
MnlI	CCTC	5 cut(s)	236, 271, 720, 809, 951
Mox20I	TGGCCA	1 cut(s)	312
Mph1103I	ATGCAT	1 cut(s)	470
MroXI	GAANNNNTTC	1 cut(s)	189
MscI	TGGCCA	1 cut(s)	312
MseI	TTAA	1 cut(s)	855
MslI	CAYNNNNRTG	4 cut(s)	171, 357, 804, 1157
Msp20I	TGGCCA	1 cut(s)	312
MspA1I	CMGCKG	4 cut(s)	14, 68, 286, 656
MspI	CCGG	3 cut(s)	235, 556, 1006
MspR9I	CCNGG	5 cut(s)	100, 182, 491, 556, 639
MunI	CAATTG	1 cut(s)	1146
Mva1269I	GAATGC	2 cut(s)	252, 522
MvaI	CCWGG	4 cut(s)	100, 182, 491, 639
MwoI	GCNNNNNNNGC	3 cut(s)	68, 648, 662
NciI	CCSGG	1 cut(s)	556
NdeII	GATC	5 cut(s)	547, 691, 893, 1072, 1186
NlaIII	CATG	7 cut(s)	22, 138, 170, 209, 536, 803, 1124
NlaIV	GGNNCC	1 cut(s)	664
NmuCI	GTSAC	4 cut(s)	120, 224, 405, 411
NsiI	ATGCAT	1 cut(s)	470
NspI	RCATGY	3 cut(s)	138, 209, 1124
NspV	TTCGAA	1 cut(s)	562
PagI	TCATGA	1 cut(s)	166
PciI	ACATGT	2 cut(s)	205, 1120
PctI	GAATGC	2 cut(s)	252, 522
PdmI	GAANNNNTTC	1 cut(s)	189
PfeI	GAWTC	1 cut(s)	291
PfoI	TCCNGGA	2 cut(s)	180, 489
PkrI	GCNGC	7 cut(s)	64, 67, 70, 285, 601, 658, 982
PleI	GAGTC	2 cut(s)	512, 1150
PmaCI	CACGTG	1 cut(s)	416
PmlI	CACGTG	1 cut(s)	416
PpsI	GAGTC	2 cut(s)	512, 1150
Ppu21I	YACGTR	2 cut(s)	254, 416
PscI	ACATGT	2 cut(s)	205, 1120
PshAI	GACNNNNGTC	1 cut(s)	152
PsiI	TTATAA	2 cut(s)	87, 1175
Psp6I	CCWGG	4 cut(s)	98, 180, 489, 637
PspCI	CACGTG	1 cut(s)	416
PspFI	CCCAGC	3 cut(s)	286, 538, 642
PspGI	CCWGG	4 cut(s)	98, 180, 489, 637
PspN4I	GGNNCC	1 cut(s)	664
PstI	CTGCAG	2 cut(s)	64, 661
PstNI	CAGNNNCTG	2 cut(s)	68, 71
PsuI	RGATCY	1 cut(s)	893
PvuII	CAGCTG	4 cut(s)	14, 68, 286, 656
RseI	CAYNNNNRTG	4 cut(s)	171, 357, 804, 1157
SalI	GTCGAC	1 cut(s)	740
SaqAI	TTAA	1 cut(s)	855
SatI	GCNGC	7 cut(s)	63, 66, 69, 284, 600, 657, 981
Sau3AI	GATC	5 cut(s)	547, 691, 893, 1072, 1186
SchI	GAGTC	2 cut(s)	513, 1151
ScrFI	CCNGG	5 cut(s)	100, 182, 491, 556, 639
SduI	GDGCHC	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	455, 706
SfcI	CTRYAG	2 cut(s)	60, 657
SfuI	TTCGAA	1 cut(s)	562
SmiMI	CAYNNNNRTG	4 cut(s)	171, 357, 804, 1157
Sse9I	AATT	6 cut(s)	38, 419, 703, 997, 1064, 1146
SsiI	CCGC	2 cut(s)	695, 1043
SspI	AATATT	2 cut(s)	304, 731
SspMI	CTAG	3 cut(s)	126, 834, 915
StyD4I	CCNGG	5 cut(s)	98, 180, 489, 554, 637
TaaI	ACNGT	2 cut(s)	92, 411
TaiI	ACGT	5 cut(s)	36, 231, 256, 418, 611
TaqI	TCGA	5 cut(s)	562, 741, 1037, 1077, 1109
TaqII	GACCGA	1 cut(s)	164
TasI	AATT	6 cut(s)	38, 419, 703, 997, 1064, 1146
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	1 cut(s)	855
Tru9I	TTAA	1 cut(s)	855
TscAI	CASTG	2 cut(s)	414, 1140
TseFI	GTSAC	4 cut(s)	120, 224, 405, 411
TseI	GCWGC	7 cut(s)	62, 65, 68, 283, 599, 656, 980
Tsp45I	GTSAC	4 cut(s)	120, 224, 405, 411
TspDTI	ATGAA	7 cut(s)	333, 338, 619, 776, 822, 944, 1077
TspGWI	ACGGA	1 cut(s)	449
TspRI	CASTG	2 cut(s)	414, 1140
XapI	RAATTY	2 cut(s)	419, 703
XceI	RCATGY	3 cut(s)	138, 209, 1124
XmiI	GTMKAC	1 cut(s)	741
XmnI	GAANNNNTTC	1 cut(s)	189
XspI	CTAG	3 cut(s)	126, 834, 915
Zsp2I	ATGCAT	1 cut(s)	470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.